Wall clock time and date at job start Mon Mar 30 2020 00:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00023 * 2 1 4 4 H 1.48489 * 109.47437 * 270.00483 * 3 2 1 5 5 H 1.48500 * 109.46931 * 30.00641 * 3 2 1 6 6 H 1.48503 * 109.46655 * 150.00157 * 3 2 1 7 7 C 1.38806 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99918 * 359.97438 * 7 2 1 9 9 S 1.76193 * 120.00056 * 179.97438 * 7 2 1 10 10 C 1.81002 * 100.00049 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47004 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.46901 * 180.02562 * 12 11 10 14 14 C 1.46848 * 110.99958 * 294.20187 * 13 12 11 15 15 C 1.53034 * 109.52086 * 174.16220 * 14 13 12 16 16 C 1.53116 * 109.27766 * 59.18490 * 15 14 13 17 17 C 1.53007 * 109.57210 * 182.40558 * 16 15 14 18 18 O 1.42903 * 109.46925 * 294.71129 * 17 16 15 19 19 C 1.53110 * 109.16138 * 302.34128 * 16 15 14 20 20 C 1.46852 * 110.99971 * 169.99744 * 13 12 11 21 21 H 0.96999 * 120.00138 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47115 * 60.00094 * 10 9 7 23 23 H 1.09001 * 109.46925 * 300.00251 * 10 9 7 24 24 H 1.09001 * 109.47194 * 299.99731 * 11 10 9 25 25 H 1.08992 * 109.47399 * 59.99903 * 11 10 9 26 26 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 27 27 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 28 28 H 1.09004 * 109.46425 * 294.18123 * 14 13 12 29 29 H 1.09002 * 109.45789 * 54.14490 * 14 13 12 30 30 H 1.08996 * 109.50601 * 299.24170 * 15 14 13 31 31 H 1.09006 * 109.50179 * 179.12409 * 15 14 13 32 32 H 1.08996 * 109.52466 * 62.24942 * 16 15 14 33 33 H 1.08992 * 109.47295 * 54.71378 * 17 16 15 34 34 H 1.09007 * 109.46806 * 174.71224 * 17 16 15 35 35 H 0.96701 * 113.99830 * 180.02562 * 18 17 16 36 36 H 1.09000 * 109.50668 * 297.71376 * 19 16 15 37 37 H 1.08999 * 109.50680 * 177.60089 * 19 16 15 38 38 H 1.08999 * 109.46052 * 305.85601 * 20 13 12 39 39 H 1.09001 * 109.46352 * 65.82479 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.3999 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9846 -0.0025 11 6 5.5958 -3.2363 -0.0026 12 6 5.8615 -4.7430 -0.0044 13 7 7.3105 -4.9847 -0.0039 14 6 7.9227 -4.5153 -1.2534 15 6 9.4443 -4.6489 -1.1590 16 6 9.8086 -6.1150 -0.9096 17 6 11.3250 -6.2472 -0.7544 18 8 11.9613 -5.9115 -1.9891 19 6 9.1195 -6.5933 0.3713 20 6 7.6073 -6.4033 0.2326 21 1 -0.4850 0.8400 0.0004 22 1 3.6434 -3.4310 -0.8927 23 1 3.6440 -3.4322 0.8873 24 1 6.0388 -2.7886 -0.8923 25 1 6.0387 -2.7899 0.8876 26 1 5.4185 -5.1911 0.8851 27 1 5.4186 -5.1891 -0.8949 28 1 7.5563 -5.1164 -2.0856 29 1 7.6592 -3.4703 -1.4167 30 1 9.8129 -4.0372 -0.3356 31 1 9.8975 -4.3150 -2.0924 32 1 9.4744 -6.7216 -1.7513 33 1 11.6704 -5.5713 0.0279 34 1 11.5745 -7.2733 -0.4842 35 1 12.9259 -5.9737 -1.9641 36 1 9.4830 -6.0122 1.2188 37 1 9.3406 -7.6485 0.5313 38 1 7.1147 -6.7296 1.1486 39 1 7.2424 -6.9956 -0.6066 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080627080.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:03 Heat of formation + Delta-G solvation = -75.773554 kcal Electronic energy + Delta-G solvation = -17097.422172 eV Core-core repulsion = 14357.955664 eV Total energy + Delta-G solvation = -2739.466508 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.48034 -37.18093 -34.81413 -32.41835 -32.05950 -30.97032 -27.60878 -25.71744 -24.62424 -23.45546 -22.03121 -20.67112 -19.89857 -17.62309 -17.42472 -16.11403 -15.61206 -15.20023 -14.96159 -14.69400 -14.61248 -14.14327 -13.98674 -13.32653 -13.17476 -12.80830 -12.65563 -12.43059 -11.92865 -11.79119 -11.51138 -11.34319 -11.04732 -11.04282 -10.93148 -10.67055 -10.56591 -10.35041 -10.15833 -10.02989 -9.73020 -8.98287 -8.53114 -8.33264 -6.91336 -6.26285 -3.98128 3.03112 3.32109 3.47896 3.57404 3.86480 3.90820 4.34014 4.50806 4.56923 4.78635 4.85000 5.01045 5.08807 5.12038 5.12794 5.22409 5.28530 5.31199 5.43661 5.47813 5.58131 5.65037 5.69676 5.73795 5.84789 5.86431 5.91354 6.02030 6.08643 6.22366 6.29062 6.52749 6.68551 7.08687 7.09896 7.29360 7.97587 8.46412 9.19774 10.83273 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.046080 B = 0.003294 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.491342 B = 8498.399548 C = 8923.403956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.091 3.909 3 Si 0.862 3.138 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.237 1.237 7 C -0.501 4.501 8 H 0.087 0.913 9 S -0.216 6.216 10 C -0.082 4.082 11 C -0.097 4.097 12 C 0.060 3.940 13 N -0.538 5.538 14 C 0.050 3.950 15 C -0.106 4.106 16 C -0.090 4.090 17 C 0.081 3.919 18 O -0.573 6.573 19 C -0.109 4.109 20 C 0.057 3.943 21 H 0.270 0.730 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.033 0.967 28 H 0.031 0.969 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.043 0.957 35 H 0.377 0.623 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.015 -13.679 -0.501 25.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.117 4.117 3 Si 0.687 3.313 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.161 1.161 7 C -0.649 4.649 8 H 0.105 0.895 9 S 0.012 5.988 10 C -0.231 4.231 11 C -0.136 4.136 12 C -0.069 4.069 13 N -0.263 5.263 14 C -0.078 4.078 15 C -0.144 4.144 16 C -0.108 4.108 17 C 0.003 3.997 18 O -0.378 6.378 19 C -0.147 4.147 20 C -0.071 4.071 21 H 0.080 0.920 22 H 0.083 0.917 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.224 0.776 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 22.131 -12.340 -0.296 25.340 hybrid contribution -0.624 -0.835 -0.491 1.152 sum 21.507 -13.175 -0.786 25.233 Atomic orbital electron populations 1.69941 1.05936 1.27684 1.48436 1.24805 0.94513 0.99032 0.93371 0.86661 0.81778 0.83173 0.79691 1.19399 1.20136 1.16117 1.22135 0.87160 0.97383 1.58224 0.89458 1.84154 1.11575 1.05542 1.97520 1.23018 0.97444 0.99061 1.03556 1.21343 0.94711 0.94309 1.03222 1.22147 0.86628 0.97314 1.00799 1.61938 1.11725 1.17396 1.35219 1.22184 0.94474 1.01206 0.89902 1.21568 0.94967 0.95370 1.02467 1.21209 0.92965 0.98057 0.98603 1.22239 0.93244 0.98348 0.85831 1.86495 1.24040 1.92221 1.35080 1.21562 0.94885 1.00743 0.97522 1.22032 0.95769 0.88609 1.00702 0.92004 0.91676 0.91399 0.91584 0.90671 0.90718 0.94887 0.95090 0.89892 0.91233 0.90986 0.90918 0.93497 0.93894 0.77621 0.90791 0.91580 0.90552 0.95064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.10 13.97 55.49 0.78 -26.33 16 2 C 0.09 2.69 5.50 -17.43 -0.10 2.60 16 3 Si 0.86 21.83 27.74 -169.99 -4.71 17.12 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 7 C -0.50 -14.77 10.04 30.94 0.31 -14.46 16 8 H 0.09 2.73 8.03 -52.48 -0.42 2.31 16 9 S -0.22 -5.36 19.41 -107.50 -2.09 -7.45 16 10 C -0.08 -1.62 5.67 37.16 0.21 -1.41 16 11 C -0.10 -1.55 5.15 -26.73 -0.14 -1.69 16 12 C 0.06 0.80 4.96 -3.82 -0.02 0.79 16 13 N -0.54 -6.54 4.66 -234.66 -1.09 -7.64 16 14 C 0.05 0.59 5.29 -3.83 -0.02 0.57 16 15 C -0.11 -1.10 5.25 -26.65 -0.14 -1.24 16 16 C -0.09 -0.81 2.49 -90.50 -0.23 -1.04 16 17 C 0.08 0.61 6.43 37.16 0.24 0.85 16 18 O -0.57 -4.78 13.26 -35.23 -0.47 -5.25 16 19 C -0.11 -0.92 5.38 -26.66 -0.14 -1.06 16 20 C 0.06 0.57 5.46 -3.83 -0.02 0.55 16 21 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 22 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 23 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 24 H 0.07 1.06 6.43 -51.93 -0.33 0.72 16 25 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.07 0.96 7.99 -51.93 -0.41 0.55 16 27 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 28 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 1.04 6.21 -51.93 -0.32 0.72 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.77 7.91 -51.93 -0.41 0.36 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.38 1.42 9.12 45.56 0.42 1.83 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.72 8.01 -51.93 -0.42 0.31 16 39 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 LS Contribution 321.31 15.07 4.84 4.84 Total: -1.00 -32.28 321.31 -8.92 -41.20 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -6.13 Total: -0.96 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -0.04 Total: -15.53 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: -0.32 Total: -33.97 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.47 Total: -5.25 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.12 kcal Atomic # 16 Polarization: -5.36 SS G_CDS: -2.09 Total: -7.45 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.28 -8.92 -41.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080627080.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.577 kcal (2) G-P(sol) polarization free energy of solvation -32.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds