Wall clock time and date at job start Mon Mar 30 2020 00:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00023 * 2 1 4 4 H 1.48489 * 109.47437 * 270.00483 * 3 2 1 5 5 H 1.48500 * 109.46931 * 30.00641 * 3 2 1 6 6 H 1.48503 * 109.46655 * 150.00157 * 3 2 1 7 7 C 1.38806 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99918 * 359.97438 * 7 2 1 9 9 S 1.76193 * 120.00056 * 179.97438 * 7 2 1 10 10 C 1.81002 * 100.00049 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47004 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.46901 * 180.02562 * 12 11 10 14 14 C 1.46848 * 110.99958 * 294.20187 * 13 12 11 15 15 C 1.53034 * 109.52086 * 174.16220 * 14 13 12 16 16 C 1.53116 * 109.27766 * 59.18490 * 15 14 13 17 17 C 1.53007 * 109.57210 * 182.40558 * 16 15 14 18 18 O 1.42903 * 109.46925 * 294.71129 * 17 16 15 19 19 C 1.53110 * 109.16138 * 302.34128 * 16 15 14 20 20 C 1.46852 * 110.99971 * 169.99744 * 13 12 11 21 21 H 0.96999 * 120.00138 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47115 * 60.00094 * 10 9 7 23 23 H 1.09001 * 109.46925 * 300.00251 * 10 9 7 24 24 H 1.09001 * 109.47194 * 299.99731 * 11 10 9 25 25 H 1.08992 * 109.47399 * 59.99903 * 11 10 9 26 26 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 27 27 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 28 28 H 1.09004 * 109.46425 * 294.18123 * 14 13 12 29 29 H 1.09002 * 109.45789 * 54.14490 * 14 13 12 30 30 H 1.08996 * 109.50601 * 299.24170 * 15 14 13 31 31 H 1.09006 * 109.50179 * 179.12409 * 15 14 13 32 32 H 1.08996 * 109.52466 * 62.24942 * 16 15 14 33 33 H 1.08992 * 109.47295 * 54.71378 * 17 16 15 34 34 H 1.09007 * 109.46806 * 174.71224 * 17 16 15 35 35 H 0.96701 * 113.99830 * 180.02562 * 18 17 16 36 36 H 1.09000 * 109.50668 * 297.71376 * 19 16 15 37 37 H 1.08999 * 109.50680 * 177.60089 * 19 16 15 38 38 H 1.08999 * 109.46052 * 305.85601 * 20 13 12 39 39 H 1.09001 * 109.46352 * 65.82479 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.3999 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9846 -0.0025 11 6 5.5958 -3.2363 -0.0026 12 6 5.8615 -4.7430 -0.0044 13 7 7.3105 -4.9847 -0.0039 14 6 7.9227 -4.5153 -1.2534 15 6 9.4443 -4.6489 -1.1590 16 6 9.8086 -6.1150 -0.9096 17 6 11.3250 -6.2472 -0.7544 18 8 11.9613 -5.9115 -1.9891 19 6 9.1195 -6.5933 0.3713 20 6 7.6073 -6.4033 0.2326 21 1 -0.4850 0.8400 0.0004 22 1 3.6434 -3.4310 -0.8927 23 1 3.6440 -3.4322 0.8873 24 1 6.0388 -2.7886 -0.8923 25 1 6.0387 -2.7899 0.8876 26 1 5.4185 -5.1911 0.8851 27 1 5.4186 -5.1891 -0.8949 28 1 7.5563 -5.1164 -2.0856 29 1 7.6592 -3.4703 -1.4167 30 1 9.8129 -4.0372 -0.3356 31 1 9.8975 -4.3150 -2.0924 32 1 9.4744 -6.7216 -1.7513 33 1 11.6704 -5.5713 0.0279 34 1 11.5745 -7.2733 -0.4842 35 1 12.9259 -5.9737 -1.9641 36 1 9.4830 -6.0122 1.2188 37 1 9.3406 -7.6485 0.5313 38 1 7.1147 -6.7296 1.1486 39 1 7.2424 -6.9956 -0.6066 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080627080.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:02 Heat of formation + Delta-G solvation = -98.985134 kcal Electronic energy + Delta-G solvation = -17098.428702 eV Core-core repulsion = 14357.955664 eV Total energy + Delta-G solvation = -2740.473037 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.31116 -37.87887 -35.79593 -34.69219 -33.17318 -31.78718 -28.57730 -27.91771 -25.74645 -24.31677 -22.92609 -21.83525 -20.67104 -19.61733 -18.17690 -17.18858 -17.03925 -16.63436 -16.06826 -15.87408 -15.69153 -15.27002 -14.99282 -14.93515 -14.21624 -14.01692 -13.83041 -13.53231 -13.39581 -13.04386 -12.96987 -12.81317 -12.54749 -12.14035 -12.03999 -11.86041 -11.71245 -11.53902 -11.31802 -11.17621 -11.13563 -10.77678 -10.56257 -9.29116 -8.99899 -8.52647 -6.23959 1.12113 1.31791 1.47890 1.73743 2.24663 2.67831 2.85348 2.92422 3.34579 3.77139 3.83377 3.95694 4.05980 4.24294 4.25964 4.33978 4.38921 4.45795 4.48704 4.58112 4.63244 4.69287 4.74616 4.77929 4.87049 4.93093 4.94964 5.08281 5.16816 5.20732 5.26253 5.29305 5.47805 5.69109 6.09221 6.10105 6.18743 6.91451 6.94663 8.60563 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.046080 B = 0.003294 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.491342 B = 8498.399548 C = 8923.403956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.037 3.963 3 Si 0.926 3.074 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.229 1.229 7 C -0.522 4.522 8 H 0.050 0.950 9 S -0.221 6.221 10 C -0.069 4.069 11 C -0.084 4.084 12 C 0.068 3.932 13 N -0.544 5.544 14 C 0.050 3.950 15 C -0.100 4.100 16 C -0.090 4.090 17 C 0.083 3.917 18 O -0.595 6.595 19 C -0.103 4.103 20 C 0.053 3.947 21 H 0.277 0.723 22 H 0.062 0.938 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.033 0.967 28 H 0.027 0.973 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.396 0.604 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.315 -14.054 -0.091 28.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.168 4.168 3 Si 0.747 3.253 4 H -0.186 1.186 5 H -0.186 1.186 6 H -0.152 1.152 7 C -0.670 4.670 8 H 0.068 0.932 9 S 0.007 5.993 10 C -0.218 4.218 11 C -0.123 4.123 12 C -0.061 4.061 13 N -0.268 5.268 14 C -0.078 4.078 15 C -0.138 4.138 16 C -0.109 4.109 17 C 0.005 3.995 18 O -0.404 6.404 19 C -0.140 4.140 20 C -0.074 4.074 21 H 0.086 0.914 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.101 0.899 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.245 0.755 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 24.450 -12.732 0.116 27.566 hybrid contribution -1.338 -0.848 -0.642 1.710 sum 23.112 -13.580 -0.525 26.811 Atomic orbital electron populations 1.70038 1.07659 1.29138 1.49278 1.25798 0.95436 1.02812 0.92726 0.85698 0.80767 0.78562 0.80230 1.18611 1.18648 1.15234 1.22345 0.90085 0.96250 1.58303 0.93171 1.83858 1.07518 1.10356 1.97563 1.23074 1.00250 0.95004 1.03446 1.21218 0.91489 0.96462 1.03119 1.21989 0.87855 0.95063 1.01224 1.61931 1.10580 1.19060 1.35274 1.22178 0.95498 1.00401 0.89731 1.21498 0.93738 0.96569 1.02019 1.21204 0.94425 0.96645 0.98587 1.22225 0.91997 0.99547 0.85720 1.86443 1.25930 1.92387 1.35624 1.21529 0.93385 1.02080 0.97030 1.22151 0.97193 0.87077 1.01023 0.91374 0.91904 0.91399 0.91556 0.90873 0.89921 0.94909 0.95491 0.91045 0.91516 0.91599 0.91928 0.92839 0.92175 0.75465 0.90748 0.89439 0.89733 0.95126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.57 13.97 21.65 0.30 -57.27 16 2 C 0.04 2.20 5.50 84.86 0.47 2.67 16 3 Si 0.93 44.79 27.74 68.60 1.90 46.69 16 4 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.23 -10.68 6.74 99.48 0.67 -10.01 16 7 C -0.52 -31.37 10.04 67.96 0.68 -30.68 16 8 H 0.05 3.27 8.03 -2.91 -0.02 3.25 16 9 S -0.22 -10.88 19.41 -56.49 -1.10 -11.98 16 10 C -0.07 -2.68 5.67 71.98 0.41 -2.28 16 11 C -0.08 -2.58 5.15 30.59 0.16 -2.42 16 12 C 0.07 1.72 4.96 86.30 0.43 2.15 16 13 N -0.54 -12.32 4.66 -896.34 -4.17 -16.50 16 14 C 0.05 1.12 5.29 86.32 0.46 1.58 16 15 C -0.10 -1.97 5.25 30.64 0.16 -1.81 16 16 C -0.09 -1.46 2.49 -10.72 -0.03 -1.48 16 17 C 0.08 1.05 6.43 71.98 0.46 1.52 16 18 O -0.60 -8.82 13.26 -148.98 -1.98 -10.80 16 19 C -0.10 -1.46 5.38 30.64 0.16 -1.29 16 20 C 0.05 0.95 5.46 86.32 0.47 1.43 16 21 H 0.28 15.88 8.31 -92.71 -0.77 15.11 16 22 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 23 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 24 H 0.07 2.05 6.43 -2.39 -0.02 2.03 16 25 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.08 1.97 7.99 -2.39 -0.02 1.95 16 27 H 0.03 0.83 8.12 -2.39 -0.02 0.81 16 28 H 0.03 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.07 1.75 6.21 -2.39 -0.01 1.73 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.36 7.91 -2.38 -0.02 1.34 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.40 2.19 9.12 -74.06 -0.68 1.51 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 1.39 8.01 -2.39 -0.02 1.37 16 39 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -69.21 321.31 -0.91 -70.12 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.29 Total: 10.36 kcal Atomic # 6 Polarization: -34.46 SS G_CDS: 3.83 Total: -30.63 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: -3.87 Total: -73.77 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -1.98 Total: -10.80 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.90 Total: 46.69 kcal Atomic # 16 Polarization: -10.88 SS G_CDS: -1.10 Total: -11.98 kcal Total: -69.21 -0.91 -70.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080627080.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.865 kcal (2) G-P(sol) polarization free energy of solvation -69.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds