Wall clock time and date at job start Sun Mar 29 2020 23:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86806 * 119.99604 * 2 1 4 4 H 1.48503 * 109.46819 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47351 * 300.00543 * 3 2 1 6 6 H 1.48500 * 109.46661 * 60.00833 * 3 2 1 7 7 C 1.40048 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99849 * 179.97438 * 7 2 1 9 9 C 1.46372 * 119.99951 * 359.97438 * 7 2 1 10 10 O 1.21691 * 120.00293 * 0.02562 * 9 7 2 11 11 N 1.34779 * 119.99883 * 180.02562 * 9 7 2 12 12 C 1.46499 * 119.99898 * 180.02562 * 11 9 7 13 13 H 1.08997 * 109.47301 * 325.00317 * 12 11 9 14 14 C 1.50696 * 109.47306 * 205.00174 * 12 11 9 15 15 C 1.38230 * 120.00309 * 140.00001 * 14 12 11 16 16 C 1.38235 * 120.00326 * 179.97438 * 15 14 12 17 17 C 1.38234 * 119.99814 * 359.97438 * 16 15 14 18 18 C 1.38240 * 120.00061 * 0.07178 * 17 16 15 19 19 C 1.38234 * 120.00081 * 359.88514 * 18 17 16 20 20 C 1.53004 * 109.47267 * 85.00116 * 12 11 9 21 21 C 1.53783 * 113.61232 * 37.49532 * 20 12 11 22 22 C 1.53779 * 87.08113 * 220.01970 * 21 20 12 23 23 C 1.53782 * 87.08210 * 25.43367 * 22 21 20 24 24 H 0.97000 * 120.00569 * 359.97438 * 1 2 3 25 25 H 0.96996 * 119.99935 * 359.97438 * 11 9 7 26 26 H 1.08000 * 120.00376 * 359.97438 * 15 14 12 27 27 H 1.08000 * 120.00616 * 179.72578 * 16 15 14 28 28 H 1.08001 * 120.00299 * 179.97438 * 17 16 15 29 29 H 1.08005 * 120.00107 * 179.97438 * 18 17 16 30 30 H 1.07999 * 120.00147 * 180.10835 * 19 18 17 31 31 H 1.08996 * 112.85287 * 168.80503 * 20 12 11 32 32 H 1.08996 * 113.61670 * 334.56956 * 21 20 12 33 33 H 1.09000 * 113.61329 * 105.47060 * 21 20 12 34 34 H 1.08999 * 113.62048 * 270.88614 * 22 21 20 35 35 H 1.09005 * 113.61470 * 139.97945 * 22 21 20 36 36 H 1.09006 * 113.61727 * 220.01734 * 23 22 21 37 37 H 1.09003 * 113.61652 * 89.11791 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 3.7006 1.3465 -0.0006 5 1 1.8817 2.3966 -1.2123 6 1 1.8819 2.3963 1.2126 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2127 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4806 -0.0005 11 7 1.9492 -3.6476 -0.0005 12 6 1.2167 -4.9164 -0.0011 13 1 0.3058 -4.8103 0.5879 14 6 2.0805 -5.9954 0.5995 15 6 1.5226 -6.9380 1.4426 16 6 2.3149 -7.9281 1.9931 17 6 3.6649 -7.9758 1.7000 18 6 4.2231 -7.0325 0.8575 19 6 3.4307 -6.0429 0.3063 20 6 0.8534 -5.2950 -1.4384 21 6 1.9462 -4.9454 -2.4624 22 6 0.8127 -4.5078 -3.4050 23 6 -0.0312 -4.2541 -2.1447 24 1 -0.4851 0.8400 0.0004 25 1 2.9191 -3.6476 -0.0009 26 1 0.4678 -6.9011 1.6714 27 1 1.8799 -8.6620 2.6554 28 1 4.2840 -8.7490 2.1304 29 1 5.2780 -7.0695 0.6288 30 1 3.8663 -5.3070 -0.3532 31 1 0.4814 -6.3157 -1.5261 32 1 2.5933 -4.1265 -2.1481 33 1 2.5020 -5.8118 -2.8207 34 1 0.4302 -5.3135 -4.0316 35 1 1.0385 -3.6026 -3.9687 36 1 -1.0718 -4.5624 -2.2465 37 1 0.0752 -3.2462 -1.7435 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153761879.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:18 Heat of formation + Delta-G solvation = 6.114027 kcal Electronic energy + Delta-G solvation = -19471.551725 eV Core-core repulsion = 16600.192178 eV Total energy + Delta-G solvation = -2871.359547 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.81568 -38.15371 -36.38701 -33.51767 -32.40206 -30.85916 -30.35765 -27.38167 -25.73495 -24.86828 -23.07818 -22.38112 -20.79630 -19.59740 -18.22636 -17.56684 -16.41414 -15.43412 -15.30898 -14.91244 -14.81758 -14.54079 -13.98847 -13.45757 -13.15029 -12.78399 -12.55309 -12.43778 -12.04339 -11.88098 -11.45472 -11.23327 -11.11159 -10.92371 -10.86179 -10.51708 -10.43752 -10.21315 -10.00526 -9.57226 -9.46809 -8.85943 -8.72997 -8.45394 -7.61317 -7.39230 -6.20009 -4.65093 1.56782 1.59224 3.12069 3.20969 3.24785 3.98115 4.10754 4.56421 4.81643 5.02515 5.11610 5.14633 5.27166 5.36590 5.40073 5.46592 5.65006 5.71378 5.77810 5.79742 6.11790 6.13374 6.18629 6.20787 6.35914 6.43421 6.49177 6.60083 6.66050 6.67665 6.80987 6.91781 7.03618 7.20943 7.41938 7.52184 7.92025 8.11340 8.32612 9.01823 9.52213 10.57954 10.76475 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.021569 B = 0.006301 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.875886 B = 4442.926190 C = 5015.964211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.090 3.910 3 Si 0.904 3.096 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.558 3.442 10 O -0.571 6.571 11 N -0.755 5.755 12 C 0.199 3.801 13 H 0.084 0.916 14 C -0.069 4.069 15 C -0.115 4.115 16 C -0.121 4.121 17 C -0.133 4.133 18 C -0.121 4.121 19 C -0.110 4.110 20 C -0.116 4.116 21 C -0.127 4.127 22 C -0.147 4.147 23 C -0.144 4.144 24 H 0.267 0.733 25 H 0.379 0.621 26 H 0.121 0.879 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.047 0.953 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.116 -11.873 -0.582 13.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.130 4.130 3 Si 0.729 3.271 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.085 0.915 9 C 0.363 3.637 10 O -0.455 6.455 11 N -0.410 5.410 12 C 0.093 3.907 13 H 0.102 0.898 14 C -0.069 4.069 15 C -0.134 4.134 16 C -0.140 4.140 17 C -0.151 4.151 18 C -0.139 4.139 19 C -0.128 4.128 20 C -0.136 4.136 21 C -0.165 4.165 22 C -0.185 4.185 23 C -0.180 4.180 24 H 0.078 0.922 25 H 0.212 0.788 26 H 0.139 0.861 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.032 -11.747 -0.577 12.793 hybrid contribution 0.942 0.643 0.001 1.141 sum 5.974 -11.104 -0.576 12.622 Atomic orbital electron populations 1.70011 1.06943 1.27143 1.35340 1.25665 0.94586 1.00163 0.92618 0.86369 0.80549 0.81977 0.78197 1.18835 1.20197 1.20212 1.20915 0.93594 0.89427 1.54248 0.91549 1.18141 0.87272 0.82301 0.76012 1.90559 1.13889 1.86660 1.54350 1.46246 1.08360 1.04353 1.82063 1.19343 0.94266 0.82711 0.94382 0.89786 1.20258 0.94478 0.96241 0.95940 1.21059 1.00002 0.95030 0.97294 1.21067 0.94087 0.98645 1.00153 1.21051 0.95243 0.99370 0.99431 1.21100 0.99518 0.95393 0.97888 1.21008 0.93519 0.98405 0.99865 1.22916 0.98109 0.98436 0.94114 1.22836 0.96358 1.00613 0.96657 1.22792 0.98441 1.00268 0.96960 1.23476 0.96236 1.03660 0.94653 0.92181 0.78835 0.86127 0.86477 0.86663 0.86442 0.86014 0.90570 0.89312 0.93135 0.91798 0.92146 0.93394 0.85102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.28 11.83 55.55 0.66 -21.62 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 3 Si 0.90 19.86 29.56 -169.99 -5.02 14.83 16 4 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.54 -14.87 9.54 -35.63 -0.34 -15.21 16 8 H 0.07 1.69 7.85 -52.49 -0.41 1.27 16 9 C 0.56 14.94 6.54 -12.99 -0.08 14.85 16 10 O -0.57 -17.13 12.19 5.20 0.06 -17.07 16 11 N -0.76 -16.13 3.54 -56.35 -0.20 -16.33 16 12 C 0.20 3.79 2.40 -69.08 -0.17 3.63 16 13 H 0.08 1.82 7.44 -51.93 -0.39 1.43 16 14 C -0.07 -1.10 4.95 -104.63 -0.52 -1.62 16 15 C -0.12 -1.68 9.67 -39.59 -0.38 -2.06 16 16 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 17 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 18 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 19 C -0.11 -1.60 8.73 -39.58 -0.35 -1.94 16 20 C -0.12 -2.07 3.56 -89.80 -0.32 -2.39 16 21 C -0.13 -2.13 7.03 -25.92 -0.18 -2.31 16 22 C -0.15 -2.54 8.08 -25.92 -0.21 -2.75 16 23 C -0.14 -2.92 7.22 -25.92 -0.19 -3.11 16 24 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 25 H 0.38 7.35 6.68 -40.82 -0.27 7.08 16 26 H 0.12 1.65 8.04 -52.49 -0.42 1.22 16 27 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 28 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 29 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 30 H 0.12 1.71 6.81 -52.49 -0.36 1.35 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.09 1.60 6.76 -51.93 -0.35 1.25 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.13 3.30 4.12 -51.93 -0.21 3.09 16 LS Contribution 302.69 15.07 4.56 4.56 Total: -1.00 -31.02 302.69 -8.90 -39.92 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -4.93 Total: 12.13 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -4.03 Total: -16.43 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.46 Total: -37.96 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: 0.06 Total: -17.07 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.02 -8.90 -39.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153761879.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.038 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds