Wall clock time and date at job start Sun Mar 29 2020 23:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86806 * 119.99604 * 2 1 4 4 H 1.48503 * 109.46819 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47351 * 300.00543 * 3 2 1 6 6 H 1.48500 * 109.46661 * 60.00833 * 3 2 1 7 7 C 1.40048 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99849 * 179.97438 * 7 2 1 9 9 C 1.46372 * 119.99951 * 359.97438 * 7 2 1 10 10 O 1.21691 * 120.00293 * 0.02562 * 9 7 2 11 11 N 1.34779 * 119.99883 * 180.02562 * 9 7 2 12 12 C 1.46499 * 119.99898 * 180.02562 * 11 9 7 13 13 H 1.08997 * 109.47301 * 325.00317 * 12 11 9 14 14 C 1.50696 * 109.47306 * 205.00174 * 12 11 9 15 15 C 1.38230 * 120.00309 * 140.00001 * 14 12 11 16 16 C 1.38235 * 120.00326 * 179.97438 * 15 14 12 17 17 C 1.38234 * 119.99814 * 359.97438 * 16 15 14 18 18 C 1.38240 * 120.00061 * 0.07178 * 17 16 15 19 19 C 1.38234 * 120.00081 * 359.88514 * 18 17 16 20 20 C 1.53004 * 109.47267 * 85.00116 * 12 11 9 21 21 C 1.53783 * 113.61232 * 37.49532 * 20 12 11 22 22 C 1.53779 * 87.08113 * 220.01970 * 21 20 12 23 23 C 1.53782 * 87.08210 * 25.43367 * 22 21 20 24 24 H 0.97000 * 120.00569 * 359.97438 * 1 2 3 25 25 H 0.96996 * 119.99935 * 359.97438 * 11 9 7 26 26 H 1.08000 * 120.00376 * 359.97438 * 15 14 12 27 27 H 1.08000 * 120.00616 * 179.72578 * 16 15 14 28 28 H 1.08001 * 120.00299 * 179.97438 * 17 16 15 29 29 H 1.08005 * 120.00107 * 179.97438 * 18 17 16 30 30 H 1.07999 * 120.00147 * 180.10835 * 19 18 17 31 31 H 1.08996 * 112.85287 * 168.80503 * 20 12 11 32 32 H 1.08996 * 113.61670 * 334.56956 * 21 20 12 33 33 H 1.09000 * 113.61329 * 105.47060 * 21 20 12 34 34 H 1.08999 * 113.62048 * 270.88614 * 22 21 20 35 35 H 1.09005 * 113.61470 * 139.97945 * 22 21 20 36 36 H 1.09006 * 113.61727 * 220.01734 * 23 22 21 37 37 H 1.09003 * 113.61652 * 89.11791 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 3.7006 1.3465 -0.0006 5 1 1.8817 2.3966 -1.2123 6 1 1.8819 2.3963 1.2126 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2127 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4806 -0.0005 11 7 1.9492 -3.6476 -0.0005 12 6 1.2167 -4.9164 -0.0011 13 1 0.3058 -4.8103 0.5879 14 6 2.0805 -5.9954 0.5995 15 6 1.5226 -6.9380 1.4426 16 6 2.3149 -7.9281 1.9931 17 6 3.6649 -7.9758 1.7000 18 6 4.2231 -7.0325 0.8575 19 6 3.4307 -6.0429 0.3063 20 6 0.8534 -5.2950 -1.4384 21 6 1.9462 -4.9454 -2.4624 22 6 0.8127 -4.5078 -3.4050 23 6 -0.0312 -4.2541 -2.1447 24 1 -0.4851 0.8400 0.0004 25 1 2.9191 -3.6476 -0.0009 26 1 0.4678 -6.9011 1.6714 27 1 1.8799 -8.6620 2.6554 28 1 4.2840 -8.7490 2.1304 29 1 5.2780 -7.0695 0.6288 30 1 3.8663 -5.3070 -0.3532 31 1 0.4814 -6.3157 -1.5261 32 1 2.5933 -4.1265 -2.1481 33 1 2.5020 -5.8118 -2.8207 34 1 0.4302 -5.3135 -4.0316 35 1 1.0385 -3.6026 -3.9687 36 1 -1.0718 -4.5624 -2.2465 37 1 0.0752 -3.2462 -1.7435 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153761879.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:18 Heat of formation + Delta-G solvation = -11.863327 kcal Electronic energy + Delta-G solvation = -19472.331282 eV Core-core repulsion = 16600.192178 eV Total energy + Delta-G solvation = -2872.139104 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.24896 -39.43901 -38.25368 -35.17897 -34.44083 -32.12309 -31.61992 -28.99607 -27.58151 -26.37561 -24.42340 -23.49783 -22.26255 -21.24508 -19.81905 -19.32860 -17.76159 -17.35645 -16.74706 -16.46459 -16.11402 -15.81887 -15.62021 -14.96780 -14.45046 -14.17959 -14.09781 -13.90523 -13.56661 -13.36645 -13.02110 -12.94282 -12.67934 -12.57363 -12.44548 -12.06596 -11.92658 -11.75892 -11.46230 -11.12790 -10.94425 -10.85476 -9.80277 -9.76011 -9.54474 -9.24052 -8.25024 -6.80231 0.49394 0.55942 1.39344 1.40115 1.56631 2.25275 2.52108 2.91425 3.20295 3.63505 3.69544 3.87733 3.96143 4.06106 4.09997 4.20840 4.22656 4.35974 4.62620 4.65830 4.71846 4.83426 4.86463 4.93484 5.06222 5.08420 5.12218 5.22480 5.27652 5.34987 5.51966 5.62989 5.66682 5.75269 5.84465 5.96102 6.17374 6.27397 6.38297 6.91637 7.61128 8.55528 8.73230 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.021569 B = 0.006301 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.875886 B = 4442.926190 C = 5015.964211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.034 3.966 3 Si 0.990 3.010 4 H -0.249 1.249 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.574 4.574 8 H 0.081 0.919 9 C 0.548 3.452 10 O -0.612 6.612 11 N -0.741 5.741 12 C 0.204 3.796 13 H 0.045 0.955 14 C -0.089 4.089 15 C -0.131 4.131 16 C -0.120 4.120 17 C -0.126 4.126 18 C -0.119 4.119 19 C -0.119 4.119 20 C -0.107 4.107 21 C -0.115 4.115 22 C -0.135 4.135 23 C -0.162 4.162 24 H 0.272 0.728 25 H 0.390 0.610 26 H 0.117 0.883 27 H 0.144 0.856 28 H 0.149 0.851 29 H 0.146 0.854 30 H 0.122 0.878 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.052 0.948 36 H 0.043 0.957 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.951 -13.536 -0.636 16.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.181 4.181 3 Si 0.810 3.190 4 H -0.172 1.172 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.610 4.610 8 H 0.099 0.901 9 C 0.352 3.648 10 O -0.499 6.499 11 N -0.395 5.395 12 C 0.098 3.902 13 H 0.063 0.937 14 C -0.090 4.090 15 C -0.150 4.150 16 C -0.138 4.138 17 C -0.144 4.144 18 C -0.137 4.137 19 C -0.138 4.138 20 C -0.127 4.127 21 C -0.152 4.152 22 C -0.173 4.173 23 C -0.200 4.200 24 H 0.082 0.918 25 H 0.224 0.776 26 H 0.135 0.865 27 H 0.162 0.838 28 H 0.167 0.833 29 H 0.164 0.836 30 H 0.140 0.860 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.905 -13.453 -0.631 15.616 hybrid contribution 0.040 1.036 0.065 1.038 sum 7.945 -12.417 -0.567 14.752 Atomic orbital electron populations 1.70174 1.09241 1.28586 1.36806 1.26818 0.95432 1.04509 0.91381 0.85087 0.79440 0.76104 0.78397 1.17220 1.19491 1.19576 1.21419 0.94484 0.90353 1.54780 0.90095 1.18361 0.86911 0.83856 0.75664 1.90527 1.15715 1.87626 1.56026 1.45899 1.08761 1.04161 1.80683 1.19268 0.93283 0.82653 0.95024 0.93724 1.19985 0.94967 0.96198 0.97847 1.21177 1.00431 0.95737 0.97651 1.21387 0.94435 0.98192 0.99772 1.21496 0.95201 0.99465 0.98214 1.21437 1.00703 0.94443 0.97122 1.21073 0.92884 0.99348 1.00469 1.22882 0.97919 0.98422 0.93460 1.22714 0.95822 1.01064 0.95598 1.22786 0.97599 1.00924 0.95960 1.23350 0.97107 1.01874 0.97624 0.91793 0.77583 0.86464 0.83829 0.83295 0.83638 0.86019 0.88523 0.90979 0.90039 0.88802 0.92954 0.93838 0.89965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.78 11.83 21.83 0.26 -49.52 16 2 C 0.03 1.88 5.50 85.31 0.47 2.35 16 3 Si 0.99 41.25 29.56 68.60 2.03 43.27 16 4 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.57 -32.24 9.54 24.83 0.24 -32.01 16 8 H 0.08 4.14 7.85 -2.91 -0.02 4.12 16 9 C 0.55 30.90 6.54 86.36 0.56 31.47 16 10 O -0.61 -39.35 12.19 -4.32 -0.05 -39.40 16 11 N -0.74 -32.92 3.54 -450.40 -1.59 -34.52 16 12 C 0.20 8.05 2.40 44.25 0.11 8.16 16 13 H 0.04 2.09 7.44 -2.39 -0.02 2.08 16 14 C -0.09 -2.84 4.95 -19.87 -0.10 -2.94 16 15 C -0.13 -3.73 9.67 22.27 0.22 -3.52 16 16 C -0.12 -2.67 10.05 22.27 0.22 -2.44 16 17 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 18 C -0.12 -2.58 10.05 22.27 0.22 -2.36 16 19 C -0.12 -3.26 8.73 22.27 0.19 -3.07 16 20 C -0.11 -3.87 3.56 -10.26 -0.04 -3.91 16 21 C -0.11 -3.72 7.03 31.12 0.22 -3.50 16 22 C -0.14 -4.61 8.08 31.12 0.25 -4.36 16 23 C -0.16 -6.91 7.22 31.12 0.22 -6.69 16 24 H 0.27 15.07 8.29 -92.71 -0.77 14.31 16 25 H 0.39 15.42 6.68 -92.71 -0.62 14.80 16 26 H 0.12 3.27 8.04 -2.91 -0.02 3.25 16 27 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 28 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 29 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 30 H 0.12 3.23 6.81 -2.91 -0.02 3.21 16 31 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 32 H 0.07 2.58 6.76 -2.39 -0.02 2.57 16 33 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.08 4.45 4.12 -2.39 -0.01 4.44 16 Total: -1.00 -71.84 302.69 4.11 -67.73 By element: Atomic # 1 Polarization: 37.06 SS G_CDS: 0.45 Total: 37.51 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 3.02 Total: -25.08 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -1.34 Total: -84.04 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -0.05 Total: -39.40 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.27 kcal Total: -71.84 4.11 -67.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153761879.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.866 kcal (2) G-P(sol) polarization free energy of solvation -71.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds