Wall clock time and date at job start Sun Mar 29 2020 23:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00007 * 2 1 4 4 H 1.48504 * 109.47049 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46840 * 119.99806 * 3 2 1 6 6 H 1.48495 * 109.47064 * 239.99958 * 3 2 1 7 7 C 1.38816 * 119.99647 * 179.72429 * 2 1 3 8 8 H 1.08001 * 119.99481 * 155.27637 * 7 2 1 9 9 N 1.36926 * 120.00372 * 335.27598 * 7 2 1 10 10 C 1.47177 * 121.02575 * 333.18805 * 9 7 2 11 11 C 1.52837 * 108.74284 * 230.81912 * 10 9 7 12 12 O 1.43060 * 109.30328 * 307.56081 * 11 10 9 13 13 C 1.42445 * 114.22925 * 61.58016 * 12 11 10 14 14 C 1.53966 * 110.02479 * 60.19178 * 13 12 11 15 15 C 1.54437 * 102.26796 * 93.10563 * 14 13 12 16 16 C 1.51408 * 105.18498 * 26.03372 * 15 14 13 17 17 C 1.38473 * 130.37463 * 163.07945 * 16 15 14 18 18 C 1.38104 * 120.25369 * 180.02562 * 17 16 15 19 19 C 1.38258 * 119.90254 * 359.97438 * 18 17 16 20 20 C 1.38083 * 119.95391 * 359.95310 * 19 18 17 21 21 C 1.38337 * 109.76825 * 343.01210 * 16 15 14 22 22 C 1.47256 * 121.02822 * 153.46937 * 9 7 2 23 23 H 0.97001 * 119.99836 * 174.17895 * 1 2 3 24 24 H 1.09001 * 109.62948 * 350.58319 * 10 9 7 25 25 H 1.08997 * 109.62780 * 111.17367 * 10 9 7 26 26 H 1.09002 * 109.58197 * 187.54555 * 11 10 9 27 27 H 1.08997 * 109.39730 * 67.46608 * 11 10 9 28 28 H 1.09004 * 110.84887 * 211.30497 * 14 13 12 29 29 H 1.09004 * 110.84635 * 334.91135 * 14 13 12 30 30 H 1.09000 * 110.30028 * 144.95939 * 15 14 13 31 31 H 1.09001 * 110.30019 * 267.00296 * 15 14 13 32 32 H 1.07999 * 119.87309 * 0.02562 * 17 16 15 33 33 H 1.08001 * 120.04730 * 179.97438 * 18 17 16 34 34 H 1.07994 * 120.02022 * 179.97438 * 19 18 17 35 35 H 1.08003 * 119.87429 * 180.02562 * 20 19 18 36 36 H 1.08995 * 109.68210 * 249.94241 * 22 9 7 37 37 H 1.09004 * 109.68081 * 10.46468 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6963 1.2126 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 0.0058 8 1 3.0160 -1.2469 -0.3852 9 7 1.4197 -2.3313 0.5072 10 6 0.3685 -2.2456 1.5337 11 6 0.7313 -3.1803 2.6873 12 8 0.9989 -4.4873 2.1707 13 6 2.0952 -4.5439 1.2630 14 6 3.3841 -4.0758 1.9632 15 6 3.9825 -5.4055 2.4722 16 6 3.4448 -6.4666 1.5356 17 6 3.8716 -7.7647 1.3111 18 6 3.2176 -8.5634 0.3937 19 6 2.1321 -8.0658 -0.3032 20 6 1.7036 -6.7723 -0.0801 21 6 2.3578 -5.9690 0.8395 22 6 1.8211 -3.6690 0.0404 23 1 -0.4850 -0.8357 -0.0852 24 1 0.2985 -1.2220 1.9016 25 1 -0.5866 -2.5503 1.1059 26 1 -0.0989 -3.2302 3.3919 27 1 1.6179 -2.8010 3.1954 28 1 4.0574 -3.5935 1.2545 29 1 3.1538 -3.4105 2.7953 30 1 5.0709 -5.3738 2.4226 31 1 3.6566 -5.6003 3.4939 32 1 4.7192 -8.1539 1.8555 33 1 3.5536 -9.5751 0.2210 34 1 1.6195 -8.6886 -1.0213 35 1 0.8553 -6.3851 -0.6249 36 1 1.0181 -4.1073 -0.5520 37 1 2.7238 -3.5908 -0.5655 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159129783.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:38:24 Heat of formation + Delta-G solvation = 9.943577 kcal Electronic energy + Delta-G solvation = -19913.465036 eV Core-core repulsion = 17042.271551 eV Total energy + Delta-G solvation = -2871.193485 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.46937 -38.10095 -35.02757 -34.31230 -31.72678 -30.89459 -29.24355 -28.71051 -26.69599 -24.18620 -23.49979 -22.34064 -21.23445 -20.70763 -18.66475 -17.58520 -16.60418 -15.52141 -15.22011 -15.17046 -14.52598 -14.44943 -13.88309 -13.73715 -13.59710 -13.28960 -12.83482 -12.63725 -12.47717 -12.26945 -11.58514 -11.26725 -11.11039 -10.88174 -10.72087 -10.64820 -10.44838 -10.38954 -10.10471 -9.93363 -9.40849 -9.10833 -8.71511 -8.49602 -8.33030 -6.90601 -6.09697 -3.27437 1.44377 1.52505 3.47283 3.49930 3.68347 3.79486 4.38720 4.53540 4.59652 4.88268 5.08728 5.12794 5.22320 5.31095 5.36606 5.45437 5.50352 5.64057 5.72572 5.84873 5.90060 5.91952 6.12410 6.14192 6.21955 6.30706 6.34289 6.36723 6.50854 6.56104 6.61693 6.71243 6.82855 6.88570 7.04410 7.11776 7.83242 7.91884 8.50661 9.02900 9.78362 10.22450 11.17673 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.033007 B = 0.005885 C = 0.005820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.093517 B = 4756.650033 C = 4809.534883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.024 4.024 3 Si 1.065 2.935 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.348 4.348 8 H 0.058 0.942 9 N -0.598 5.598 10 C 0.118 3.882 11 C 0.040 3.960 12 O -0.374 6.374 13 C 0.142 3.858 14 C -0.132 4.132 15 C -0.081 4.081 16 C -0.082 4.082 17 C -0.117 4.117 18 C -0.118 4.118 19 C -0.129 4.129 20 C -0.087 4.087 21 C -0.073 4.073 22 C 0.132 3.868 23 H 0.269 0.731 24 H 0.087 0.913 25 H 0.025 0.975 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.023 0.977 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.126 -13.201 3.775 15.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.226 4.226 3 Si 0.894 3.106 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.477 4.477 8 H 0.076 0.924 9 N -0.322 5.322 10 C -0.008 4.008 11 C -0.038 4.038 12 O -0.294 6.294 13 C 0.102 3.898 14 C -0.170 4.170 15 C -0.118 4.118 16 C -0.083 4.083 17 C -0.135 4.135 18 C -0.136 4.136 19 C -0.147 4.147 20 C -0.105 4.105 21 C -0.074 4.074 22 C 0.006 3.994 23 H 0.080 0.920 24 H 0.105 0.895 25 H 0.043 0.957 26 H 0.102 0.898 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.041 0.959 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.856 -11.652 3.873 13.604 hybrid contribution 0.245 -1.512 -0.247 1.552 sum 6.100 -13.165 3.626 14.956 Atomic orbital electron populations 1.70781 1.06595 1.30378 1.47771 1.25857 0.96523 1.01417 0.98771 0.83531 0.74795 0.76044 0.76221 1.21038 1.22029 1.21956 1.19957 0.97324 0.88252 1.42186 0.92429 1.44118 1.44586 1.00846 1.42697 1.21514 0.91180 0.99304 0.88820 1.23173 0.99814 0.83943 0.96874 1.87796 1.50208 1.29604 1.61749 1.20898 0.86864 0.90645 0.91437 1.22723 0.96829 0.96107 1.01322 1.21108 1.00044 0.92728 0.97952 1.20718 0.96440 0.94330 0.96764 1.20552 1.00550 0.93020 0.99388 1.20996 0.96316 0.99400 0.96937 1.20995 0.97673 0.95442 1.00566 1.20715 0.99211 0.93308 0.97256 1.20212 0.95871 0.94827 0.96463 1.21448 0.98582 0.86567 0.92804 0.91984 0.89510 0.95725 0.89750 0.93204 0.90072 0.89812 0.90960 0.90370 0.86474 0.86141 0.86024 0.86097 0.95940 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.24 12.43 55.49 0.69 -26.55 16 2 C -0.02 -0.66 4.72 -17.43 -0.08 -0.74 16 3 Si 1.06 24.93 29.99 -169.99 -5.10 19.83 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.35 -9.63 9.55 -15.06 -0.14 -9.77 16 8 H 0.06 1.59 7.94 -52.49 -0.42 1.18 16 9 N -0.60 -15.06 2.76 -172.30 -0.48 -15.54 16 10 C 0.12 2.79 4.84 -3.76 -0.02 2.77 16 11 C 0.04 0.78 6.72 37.07 0.25 1.03 16 12 O -0.37 -7.65 10.26 -35.23 -0.36 -8.01 16 13 C 0.14 2.75 0.90 -91.23 -0.08 2.66 16 14 C -0.13 -2.31 5.93 -25.47 -0.15 -2.47 16 15 C -0.08 -1.18 6.77 -26.78 -0.18 -1.36 16 16 C -0.08 -1.27 6.14 -104.15 -0.64 -1.91 16 17 C -0.12 -1.52 10.04 -39.54 -0.40 -1.92 16 18 C -0.12 -1.43 10.05 -39.62 -0.40 -1.83 16 19 C -0.13 -1.67 10.04 -39.63 -0.40 -2.07 16 20 C -0.09 -1.36 9.69 -39.53 -0.38 -1.75 16 21 C -0.07 -1.26 5.28 -104.35 -0.55 -1.82 16 22 C 0.13 2.93 5.29 -3.72 -0.02 2.91 16 23 H 0.27 8.13 6.62 -40.82 -0.27 7.86 16 24 H 0.09 2.23 6.43 -51.93 -0.33 1.90 16 25 H 0.02 0.61 7.77 -51.93 -0.40 0.21 16 26 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 27 H 0.05 0.96 6.01 -51.93 -0.31 0.65 16 28 H 0.08 1.47 7.75 -51.93 -0.40 1.06 16 29 H 0.08 1.50 5.80 -51.93 -0.30 1.20 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.12 1.86 7.69 -52.48 -0.40 1.46 16 36 H 0.02 0.52 7.59 -51.93 -0.39 0.12 16 37 H 0.06 1.40 7.75 -51.93 -0.40 0.99 16 LS Contribution 292.68 15.07 4.41 4.41 Total: -1.00 -30.77 292.68 -9.00 -39.78 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -4.97 Total: 2.35 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -3.20 Total: -16.26 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.21 Total: -42.09 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -0.36 Total: -8.01 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -5.10 Total: 19.83 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.77 -9.00 -39.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159129783.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.719 kcal (2) G-P(sol) polarization free energy of solvation -30.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds