Wall clock time and date at job start Sun Mar 29 2020 23:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00007 * 2 1 4 4 H 1.48504 * 109.47049 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46840 * 119.99806 * 3 2 1 6 6 H 1.48495 * 109.47064 * 239.99958 * 3 2 1 7 7 C 1.38816 * 119.99647 * 179.72429 * 2 1 3 8 8 H 1.08001 * 119.99481 * 155.27637 * 7 2 1 9 9 N 1.36926 * 120.00372 * 335.27598 * 7 2 1 10 10 C 1.47177 * 121.02575 * 333.18805 * 9 7 2 11 11 C 1.52837 * 108.74284 * 230.81912 * 10 9 7 12 12 O 1.43060 * 109.30328 * 307.56081 * 11 10 9 13 13 C 1.42445 * 114.22925 * 61.58016 * 12 11 10 14 14 C 1.53966 * 110.02479 * 60.19178 * 13 12 11 15 15 C 1.54437 * 102.26796 * 93.10563 * 14 13 12 16 16 C 1.51408 * 105.18498 * 26.03372 * 15 14 13 17 17 C 1.38473 * 130.37463 * 163.07945 * 16 15 14 18 18 C 1.38104 * 120.25369 * 180.02562 * 17 16 15 19 19 C 1.38258 * 119.90254 * 359.97438 * 18 17 16 20 20 C 1.38083 * 119.95391 * 359.95310 * 19 18 17 21 21 C 1.38337 * 109.76825 * 343.01210 * 16 15 14 22 22 C 1.47256 * 121.02822 * 153.46937 * 9 7 2 23 23 H 0.97001 * 119.99836 * 174.17895 * 1 2 3 24 24 H 1.09001 * 109.62948 * 350.58319 * 10 9 7 25 25 H 1.08997 * 109.62780 * 111.17367 * 10 9 7 26 26 H 1.09002 * 109.58197 * 187.54555 * 11 10 9 27 27 H 1.08997 * 109.39730 * 67.46608 * 11 10 9 28 28 H 1.09004 * 110.84887 * 211.30497 * 14 13 12 29 29 H 1.09004 * 110.84635 * 334.91135 * 14 13 12 30 30 H 1.09000 * 110.30028 * 144.95939 * 15 14 13 31 31 H 1.09001 * 110.30019 * 267.00296 * 15 14 13 32 32 H 1.07999 * 119.87309 * 0.02562 * 17 16 15 33 33 H 1.08001 * 120.04730 * 179.97438 * 18 17 16 34 34 H 1.07994 * 120.02022 * 179.97438 * 19 18 17 35 35 H 1.08003 * 119.87429 * 180.02562 * 20 19 18 36 36 H 1.08995 * 109.68210 * 249.94241 * 22 9 7 37 37 H 1.09004 * 109.68081 * 10.46468 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6963 1.2126 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 0.0058 8 1 3.0160 -1.2469 -0.3852 9 7 1.4197 -2.3313 0.5072 10 6 0.3685 -2.2456 1.5337 11 6 0.7313 -3.1803 2.6873 12 8 0.9989 -4.4873 2.1707 13 6 2.0952 -4.5439 1.2630 14 6 3.3841 -4.0758 1.9632 15 6 3.9825 -5.4055 2.4722 16 6 3.4448 -6.4666 1.5356 17 6 3.8716 -7.7647 1.3111 18 6 3.2176 -8.5634 0.3937 19 6 2.1321 -8.0658 -0.3032 20 6 1.7036 -6.7723 -0.0801 21 6 2.3578 -5.9690 0.8395 22 6 1.8211 -3.6690 0.0404 23 1 -0.4850 -0.8357 -0.0852 24 1 0.2985 -1.2220 1.9016 25 1 -0.5866 -2.5503 1.1059 26 1 -0.0989 -3.2302 3.3919 27 1 1.6179 -2.8010 3.1954 28 1 4.0574 -3.5935 1.2545 29 1 3.1538 -3.4105 2.7953 30 1 5.0709 -5.3738 2.4226 31 1 3.6566 -5.6003 3.4939 32 1 4.7192 -8.1539 1.8555 33 1 3.5536 -9.5751 0.2210 34 1 1.6195 -8.6886 -1.0213 35 1 0.8553 -6.3851 -0.6249 36 1 1.0181 -4.1073 -0.5520 37 1 2.7238 -3.5908 -0.5655 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159129783.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:38:23 Heat of formation + Delta-G solvation = -7.657435 kcal Electronic energy + Delta-G solvation = -19914.228273 eV Core-core repulsion = 17042.271551 eV Total energy + Delta-G solvation = -2871.956722 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.82368 -39.51510 -36.81778 -35.72677 -33.35573 -32.57414 -30.75073 -29.89023 -28.46373 -25.86501 -25.22997 -23.64173 -22.81601 -21.84931 -20.27444 -19.57557 -17.97971 -17.12478 -16.58920 -16.35646 -16.25817 -16.00366 -15.55119 -15.30499 -15.11115 -14.73467 -14.46090 -14.06115 -13.82394 -13.46349 -13.22586 -12.91784 -12.64667 -12.51667 -12.21245 -12.12234 -11.94318 -11.88063 -11.85563 -11.68991 -11.21609 -10.90416 -10.44092 -9.80036 -9.55429 -8.98775 -8.29998 -5.47919 0.33663 0.45795 1.56974 1.64211 1.83552 2.55795 2.63799 3.03249 3.13480 3.32338 3.40192 3.68614 3.85586 4.01389 4.15059 4.16971 4.19569 4.26363 4.36555 4.46758 4.48634 4.59423 4.64518 4.71424 4.80217 4.87560 4.88825 4.99733 5.04462 5.10985 5.15928 5.24405 5.53898 5.57765 5.70856 5.74709 6.08037 6.24555 6.29174 6.90282 7.66218 8.11065 8.92993 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.033007 B = 0.005885 C = 0.005820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.093517 B = 4756.650033 C = 4809.534883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.073 4.073 3 Si 1.117 2.883 4 H -0.291 1.291 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.355 4.355 8 H 0.054 0.946 9 N -0.613 5.613 10 C 0.124 3.876 11 C 0.050 3.950 12 O -0.382 6.382 13 C 0.144 3.856 14 C -0.131 4.131 15 C -0.072 4.072 16 C -0.092 4.092 17 C -0.115 4.115 18 C -0.108 4.108 19 C -0.127 4.127 20 C -0.109 4.109 21 C -0.109 4.109 22 C 0.133 3.867 23 H 0.252 0.748 24 H 0.062 0.938 25 H 0.003 0.997 26 H 0.113 0.887 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.150 0.850 33 H 0.160 0.840 34 H 0.149 0.851 35 H 0.107 0.893 36 H 0.006 0.994 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.292 -15.319 4.690 18.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.269 4.269 3 Si 0.941 3.059 4 H -0.217 1.217 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.484 4.484 8 H 0.071 0.929 9 N -0.339 5.339 10 C -0.002 4.002 11 C -0.027 4.027 12 O -0.301 6.301 13 C 0.104 3.896 14 C -0.169 4.169 15 C -0.108 4.108 16 C -0.092 4.092 17 C -0.132 4.132 18 C -0.126 4.126 19 C -0.145 4.145 20 C -0.127 4.127 21 C -0.109 4.109 22 C 0.008 3.992 23 H 0.062 0.938 24 H 0.081 0.919 25 H 0.021 0.979 26 H 0.131 0.869 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.116 0.884 31 H 0.107 0.893 32 H 0.168 0.832 33 H 0.178 0.822 34 H 0.166 0.834 35 H 0.125 0.875 36 H 0.023 0.977 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.035 -13.814 4.792 16.684 hybrid contribution -0.447 -0.971 -0.624 1.237 sum 7.588 -14.784 4.168 17.133 Atomic orbital electron populations 1.70912 1.07594 1.29299 1.50397 1.27292 0.96533 1.04826 0.98275 0.82835 0.73829 0.71798 0.77437 1.21686 1.20178 1.20221 1.20207 0.97151 0.89337 1.41739 0.92858 1.44332 1.44721 1.01451 1.43352 1.21409 0.90068 0.98946 0.89783 1.23089 1.01195 0.82970 0.95441 1.87797 1.51049 1.29427 1.61854 1.20903 0.87202 0.91812 0.89713 1.22643 0.95849 0.97835 1.00567 1.21053 1.01325 0.90378 0.98070 1.20898 0.95907 0.95622 0.96785 1.20959 1.01149 0.91849 0.99272 1.21491 0.94938 1.00881 0.95251 1.21333 0.98011 0.94302 1.00848 1.20833 0.99447 0.94809 0.97627 1.20183 0.97967 0.94037 0.98739 1.21521 0.97406 0.85809 0.94481 0.93813 0.91918 0.97861 0.86913 0.92375 0.91313 0.90544 0.88429 0.89337 0.83225 0.82226 0.83372 0.87468 0.97652 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.00 12.43 21.65 0.27 -57.73 16 2 C -0.07 -4.18 4.72 84.86 0.40 -3.78 16 3 Si 1.12 50.79 29.99 68.60 2.06 52.85 16 4 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.36 -20.22 9.55 84.04 0.80 -19.42 16 8 H 0.05 3.02 7.94 -2.91 -0.02 3.00 16 9 N -0.61 -32.24 2.76 -699.02 -1.93 -34.17 16 10 C 0.12 6.13 4.84 86.20 0.42 6.54 16 11 C 0.05 2.01 6.72 71.93 0.48 2.49 16 12 O -0.38 -15.73 10.26 -148.98 -1.53 -17.26 16 13 C 0.14 5.64 0.90 -11.19 -0.01 5.63 16 14 C -0.13 -4.55 5.93 31.41 0.19 -4.36 16 15 C -0.07 -1.90 6.77 30.56 0.21 -1.70 16 16 C -0.09 -2.61 6.14 -19.56 -0.12 -2.73 16 17 C -0.11 -2.50 10.04 22.29 0.22 -2.28 16 18 C -0.11 -2.13 10.05 22.24 0.22 -1.91 16 19 C -0.13 -2.97 10.04 22.24 0.22 -2.75 16 20 C -0.11 -3.39 9.69 22.30 0.22 -3.18 16 21 C -0.11 -3.72 5.28 -19.69 -0.10 -3.82 16 22 C 0.13 6.19 5.29 86.18 0.46 6.65 16 23 H 0.25 16.04 6.62 -92.71 -0.61 15.43 16 24 H 0.06 3.38 6.43 -2.39 -0.02 3.36 16 25 H 0.00 0.18 7.77 -2.39 -0.02 0.16 16 26 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 27 H 0.06 2.23 6.01 -2.39 -0.01 2.22 16 28 H 0.07 2.50 7.75 -2.38 -0.02 2.49 16 29 H 0.08 2.71 5.80 -2.38 -0.01 2.70 16 30 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 33 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 34 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 35 H 0.11 3.48 7.69 -2.91 -0.02 3.45 16 36 H 0.01 0.27 7.59 -2.39 -0.02 0.25 16 37 H 0.06 2.61 7.75 -2.39 -0.02 2.59 16 Total: -1.00 -68.93 292.68 3.69 -65.25 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 1.22 Total: 15.68 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 3.60 Total: -24.61 kcal Atomic # 7 Polarization: -90.24 SS G_CDS: -1.66 Total: -91.90 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -1.53 Total: -17.26 kcal Atomic # 14 Polarization: 50.79 SS G_CDS: 2.06 Total: 52.85 kcal Total: -68.93 3.69 -65.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159129783.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.588 kcal (2) G-P(sol) polarization free energy of solvation -68.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds