Wall clock time and date at job start Sun Mar 29 2020 23:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00191 * 2 1 4 4 H 1.48502 * 109.47045 * 239.99627 * 3 2 1 5 5 H 1.48506 * 109.47266 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47563 * 119.99577 * 3 2 1 7 7 C 1.38803 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00040 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00247 * 0.02562 * 7 2 1 10 10 C 1.80995 * 100.00193 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47311 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47420 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.47414 * 179.97438 * 12 11 10 14 14 C 1.46850 * 110.99945 * 45.79200 * 13 12 11 15 15 C 1.53034 * 109.52564 * 185.83944 * 14 13 12 16 16 C 1.53120 * 109.27663 * 300.81923 * 15 14 13 17 17 C 1.53120 * 109.15972 * 57.65936 * 16 15 14 18 18 H 1.08992 * 109.50741 * 62.28338 * 17 16 15 19 19 C 1.52999 * 109.50294 * 182.40242 * 17 16 15 20 20 O 1.42898 * 109.47431 * 294.79895 * 19 17 16 21 21 C 1.46850 * 111.00333 * 170.00269 * 13 12 11 22 22 H 0.97006 * 119.99889 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47037 * 59.99895 * 10 9 7 24 24 H 1.09002 * 109.47079 * 300.00236 * 10 9 7 25 25 H 1.09001 * 109.47033 * 60.00043 * 11 10 9 26 26 H 1.08998 * 109.46884 * 300.00240 * 11 10 9 27 27 H 1.09001 * 109.46815 * 60.00115 * 12 11 10 28 28 H 1.09002 * 109.47193 * 300.00523 * 12 11 10 29 29 H 1.09007 * 109.46080 * 65.82377 * 14 13 12 30 30 H 1.09001 * 109.45527 * 305.85274 * 14 13 12 31 31 H 1.09000 * 109.50225 * 180.88431 * 15 14 13 32 32 H 1.08997 * 109.50202 * 60.76419 * 15 14 13 33 33 H 1.08996 * 109.52935 * 297.74895 * 16 15 14 34 34 H 1.09005 * 109.52152 * 177.55517 * 16 15 14 35 35 H 1.09004 * 109.46996 * 54.79987 * 19 17 16 36 36 H 1.09005 * 109.46821 * 174.79804 * 19 17 16 37 37 H 0.96693 * 114.00151 * 180.02562 * 20 19 17 38 38 H 1.08995 * 109.45831 * 54.14149 * 21 13 12 39 39 H 1.08998 * 109.45719 * 294.17998 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9792 -5.3243 0.0012 12 6 3.1511 -6.3078 0.0005 13 7 2.6360 -7.6835 0.0018 14 6 1.5553 -7.8416 -0.9798 15 6 0.9468 -9.2398 -0.8498 16 6 2.0360 -10.2892 -1.0886 17 6 3.1716 -10.0723 -0.0847 18 1 2.7935 -10.2108 0.9281 19 6 4.2915 -11.0791 -0.3548 20 8 3.8148 -12.4018 -0.0996 21 6 3.7156 -8.6500 -0.2368 22 1 -0.4850 0.8401 -0.0004 23 1 3.1243 -3.7314 0.8905 24 1 3.1244 -3.7314 -0.8894 25 1 1.3703 -5.4847 -0.8886 26 1 1.3708 -5.4840 0.8914 27 1 3.7604 -6.1476 0.8901 28 1 3.7592 -6.1479 -0.8899 29 1 1.9560 -7.7119 -1.9852 30 1 0.7855 -7.0920 -0.7962 31 1 0.1552 -9.3623 -1.5891 32 1 0.5336 -9.3652 0.1509 33 1 2.4223 -10.1891 -2.1028 34 1 1.6167 -11.2864 -0.9542 35 1 4.6070 -11.0010 -1.3953 36 1 5.1376 -10.8654 0.2984 37 1 4.4737 -13.0932 -0.2502 38 1 4.5148 -8.4874 0.4863 39 1 4.1061 -8.5164 -1.2456 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173862654.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:34 Heat of formation + Delta-G solvation = -95.839471 kcal Electronic energy + Delta-G solvation = -17118.772575 eV Core-core repulsion = 14378.435944 eV Total energy + Delta-G solvation = -2740.336631 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.39568 -37.84940 -35.79294 -34.60906 -32.85433 -32.44551 -27.96686 -27.13667 -26.78858 -24.02617 -23.42448 -21.34912 -20.67714 -19.55228 -18.23306 -17.17494 -16.89834 -16.49768 -16.17554 -16.03770 -15.54627 -15.35097 -14.96062 -14.64976 -14.43639 -13.93218 -13.58019 -13.47419 -13.28429 -13.02203 -12.91372 -12.87701 -12.45310 -12.35380 -12.00053 -11.80825 -11.60281 -11.49722 -11.27908 -11.14901 -11.08077 -10.79391 -10.32064 -9.27296 -8.67419 -8.37531 -6.14138 1.30921 1.40694 1.47481 1.73537 2.28116 2.79845 2.96586 3.31770 3.48293 3.77053 3.87752 3.94316 4.07299 4.12323 4.30193 4.31812 4.44980 4.46369 4.52754 4.55402 4.58182 4.64133 4.73129 4.78734 4.80393 4.91527 5.02238 5.10493 5.17570 5.19047 5.26631 5.36160 5.38980 5.47155 6.09421 6.16278 6.17568 6.94416 7.04371 8.71740 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.060437 B = 0.003108 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.179956 B = 9007.380345 C = 9355.944428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.014 3.986 3 Si 0.995 3.005 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.539 4.539 8 H 0.073 0.927 9 S -0.199 6.199 10 C -0.087 4.087 11 C -0.089 4.089 12 C 0.071 3.929 13 N -0.546 5.546 14 C 0.045 3.955 15 C -0.115 4.115 16 C -0.106 4.106 17 C -0.084 4.084 18 H 0.069 0.931 19 C 0.085 3.915 20 O -0.591 6.591 21 C 0.064 3.936 22 H 0.272 0.728 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.038 0.962 29 H 0.032 0.968 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.397 0.603 38 H 0.083 0.917 39 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.542 -21.684 -2.430 23.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.190 4.190 3 Si 0.816 3.184 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.687 4.687 8 H 0.091 0.909 9 S 0.030 5.970 10 C -0.237 4.237 11 C -0.127 4.127 12 C -0.058 4.058 13 N -0.270 5.270 14 C -0.083 4.083 15 C -0.153 4.153 16 C -0.144 4.144 17 C -0.103 4.103 18 H 0.087 0.913 19 C 0.006 3.994 20 O -0.400 6.400 21 C -0.064 4.064 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.100 0.900 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.247 0.753 38 H 0.102 0.898 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.518 -21.536 -1.827 22.883 hybrid contribution 2.284 1.296 -0.859 2.763 sum 9.802 -20.239 -2.685 22.648 Atomic orbital electron populations 1.70151 1.07717 1.28630 1.47923 1.26088 0.96050 1.03167 0.93744 0.85060 0.77932 0.76012 0.79375 1.18890 1.19952 1.18887 1.23012 0.94743 0.91975 1.58964 0.90875 1.84643 1.14117 1.01214 1.97041 1.23152 1.00131 0.97427 1.02947 1.21321 0.98083 0.90630 1.02688 1.22011 0.95854 0.86645 1.01296 1.61927 1.11009 1.03635 1.50474 1.22265 0.94502 0.98484 0.93042 1.21588 0.98091 0.93246 1.02332 1.21519 0.95570 0.98849 0.98435 1.21108 0.95897 0.92764 1.00489 0.91251 1.22116 0.95281 0.82120 0.99839 1.86427 1.44549 1.16825 1.92174 1.22023 0.93173 0.90945 1.00253 0.91946 0.91792 0.91990 0.91488 0.91588 0.90039 0.94365 0.94931 0.90794 0.90493 0.91935 0.92068 0.91490 0.92673 0.92397 0.75339 0.89836 0.94287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.37 13.22 21.65 0.29 -55.08 16 2 C 0.01 0.83 5.49 84.86 0.47 1.29 16 3 Si 0.99 44.15 29.55 68.60 2.03 46.17 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 5 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.54 -31.48 9.50 67.96 0.65 -30.83 16 8 H 0.07 4.09 7.80 -2.91 -0.02 4.07 16 9 S -0.20 -10.74 21.44 -56.49 -1.21 -11.95 16 10 C -0.09 -3.54 5.67 71.98 0.41 -3.13 16 11 C -0.09 -2.91 4.47 30.59 0.14 -2.77 16 12 C 0.07 1.86 5.27 86.30 0.46 2.32 16 13 N -0.55 -13.20 4.81 -896.37 -4.31 -17.51 16 14 C 0.04 1.06 4.85 86.32 0.42 1.48 16 15 C -0.11 -2.35 6.09 30.65 0.19 -2.16 16 16 C -0.11 -1.97 5.16 30.67 0.16 -1.81 16 17 C -0.08 -1.52 2.59 -10.74 -0.03 -1.55 16 18 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 19 C 0.08 1.16 6.43 71.98 0.46 1.62 16 20 O -0.59 -8.78 13.25 -148.98 -1.97 -10.75 16 21 C 0.06 1.23 4.71 86.33 0.41 1.63 16 22 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 23 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 24 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.07 2.22 6.21 -2.39 -0.01 2.21 16 26 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.04 0.96 8.08 -2.39 -0.02 0.94 16 29 H 0.03 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.07 1.96 5.81 -2.39 -0.01 1.94 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.28 7.90 -2.38 -0.02 1.26 16 35 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 37 H 0.40 2.13 9.12 -74.06 -0.68 1.46 16 38 H 0.08 1.45 8.12 -2.39 -0.02 1.43 16 39 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -68.77 322.88 -1.13 -69.90 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.33 Total: 13.12 kcal Atomic # 6 Polarization: -37.62 SS G_CDS: 3.72 Total: -33.90 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -4.02 Total: -72.59 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -1.97 Total: -10.75 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -10.74 SS G_CDS: -1.21 Total: -11.95 kcal Total: -68.77 -1.13 -69.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173862654.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.935 kcal (2) G-P(sol) polarization free energy of solvation -68.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds