Wall clock time and date at job start Mon Mar 30 2020 00:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 112.84966 * 2 1 4 4 C 1.34779 * 120.00043 * 50.32721 * 3 2 1 5 5 O 1.21546 * 119.99707 * 0.02562 * 4 3 2 6 6 C 1.47884 * 119.99844 * 180.27430 * 4 3 2 7 7 C 1.39924 * 120.02350 * 359.72855 * 6 4 3 8 8 C 1.38334 * 120.35507 * 180.02562 * 7 6 4 9 9 C 1.37755 * 120.41178 * 359.97438 * 8 7 6 10 10 C 1.40749 * 120.04123 * 0.02562 * 9 8 7 11 11 C 1.41433 * 120.17876 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99765 * 24.33851 * 11 10 9 13 13 C 1.39934 * 120.00172 * 204.34308 * 11 10 9 14 14 N 1.30833 * 120.00119 * 17.73650 * 13 11 10 15 15 Si 1.86801 * 119.99912 * 197.73681 * 13 11 10 16 16 H 1.48493 * 109.47329 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47131 * 120.00170 * 15 13 11 18 18 H 1.48500 * 109.46865 * 239.99697 * 15 13 11 19 19 C 1.38991 * 120.02618 * 179.45775 * 6 4 3 20 20 C 1.53778 * 113.61131 * 131.19605 * 2 1 3 21 21 C 1.53950 * 87.02095 * 89.22677 * 20 2 1 22 22 C 1.53778 * 113.61246 * 228.80226 * 2 1 3 23 23 H 1.09005 * 109.46966 * 69.66563 * 1 2 3 24 24 H 1.08995 * 109.47407 * 189.66832 * 1 2 3 25 25 H 1.08999 * 109.47364 * 309.66770 * 1 2 3 26 26 H 0.97003 * 119.99967 * 230.33629 * 3 2 1 27 27 H 1.07995 * 119.82230 * 359.97438 * 7 6 4 28 28 H 1.07999 * 119.78936 * 179.97438 * 8 7 6 29 29 H 1.07998 * 119.97265 * 179.97438 * 9 8 7 30 30 H 0.96989 * 119.99864 * 180.02562 * 14 13 11 31 31 H 1.08003 * 120.20106 * 359.97116 * 19 6 4 32 32 H 1.09005 * 113.61282 * 203.75337 * 20 2 1 33 33 H 1.09000 * 113.61579 * 334.65043 * 20 2 1 34 34 H 1.08997 * 113.53984 * 270.80951 * 21 20 2 35 35 H 1.09001 * 113.74038 * 139.94059 * 21 20 2 36 36 H 1.08993 * 113.61552 * 25.34928 * 22 2 1 37 37 H 1.08997 * 113.61404 * 156.25868 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0989 1.3500 0.0000 4 6 1.6739 2.2604 0.8984 5 8 0.8190 1.9611 1.7089 6 6 2.2438 3.6250 0.8945 7 6 3.2284 3.9698 -0.0381 8 6 3.7666 5.2441 -0.0476 9 6 3.3395 6.1883 0.8601 10 6 2.3500 5.8598 1.8056 11 6 1.9090 6.8270 2.7385 12 1 2.0056 7.8787 2.5124 13 6 1.3475 6.4215 3.9544 14 7 1.5367 5.2016 4.3877 15 14 0.3280 7.6219 4.9589 16 1 0.2647 8.9277 4.2547 17 1 -1.0459 7.0840 5.1277 18 1 0.9540 7.8078 6.2925 19 6 1.7979 4.5676 1.8134 20 6 2.1459 -0.9280 1.0602 21 6 2.0949 -2.0420 -0.0012 22 6 2.1460 -0.9281 -1.0602 23 1 -0.3633 0.3571 -0.9637 24 1 -0.3634 -1.0130 0.1726 25 1 -0.3634 0.6560 0.7910 26 1 2.7814 1.5888 -0.6467 27 1 3.5705 3.2370 -0.7537 28 1 4.5263 5.5003 -0.7711 29 1 3.7648 7.1809 0.8466 30 1 1.1472 4.9204 5.2303 31 1 1.0347 4.3073 2.5318 32 1 3.1585 -0.6477 1.3507 33 1 1.4939 -1.1079 1.9149 34 1 1.1594 -2.6013 -0.0006 35 1 2.9736 -2.6869 -0.0031 36 1 1.4939 -1.1080 -1.9149 37 1 3.1585 -0.6478 -1.3505 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178885827.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:02:50 Heat of formation + Delta-G solvation = -5.518818 kcal Electronic energy + Delta-G solvation = -18995.577149 eV Core-core repulsion = 16123.713164 eV Total energy + Delta-G solvation = -2871.863985 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.08447 -38.14669 -36.73306 -33.78246 -32.83507 -30.17774 -29.44102 -28.51468 -25.71412 -25.33539 -23.93256 -22.02173 -20.94030 -19.39266 -18.64263 -17.70241 -16.53831 -15.77986 -15.15001 -15.01650 -14.67801 -14.17444 -13.89499 -13.39798 -13.12808 -12.88044 -12.54562 -12.43837 -12.21225 -12.02224 -11.62841 -11.29250 -11.23292 -11.10695 -10.99376 -10.71704 -10.58171 -10.48183 -10.29494 -9.93387 -9.67379 -9.21326 -8.77516 -8.53470 -7.61180 -7.50970 -6.79449 -4.40654 2.23590 2.81550 3.08427 3.13273 3.15588 3.75022 3.88557 3.92922 4.51681 4.60438 4.68619 4.85042 4.89899 5.46864 5.58658 5.62308 5.69870 5.75552 5.81490 5.90861 5.97280 6.08612 6.16427 6.20608 6.28272 6.34013 6.63241 6.73090 6.99324 7.02311 7.08151 7.22641 7.39755 7.71855 7.79129 7.94281 8.14749 8.23009 8.52229 8.81388 8.84723 9.03369 10.15313 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.027257 B = 0.005318 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.028807 B = 5263.616497 C = 5998.331853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.155 3.845 3 N -0.726 5.726 4 C 0.566 3.434 5 O -0.542 6.542 6 C -0.129 4.129 7 C -0.219 4.219 8 C -0.098 4.098 9 C -0.213 4.213 10 C 0.099 3.901 11 C -0.460 4.460 12 H 0.081 0.919 13 C 0.074 3.926 14 N -0.783 5.783 15 Si 0.909 3.091 16 H -0.260 1.260 17 H -0.271 1.271 18 H -0.274 1.274 19 C -0.093 4.093 20 C -0.144 4.144 21 C -0.138 4.138 22 C -0.141 4.141 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.094 0.906 26 H 0.398 0.602 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.284 0.716 31 H 0.134 0.866 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.670 -9.318 -7.189 11.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.069 3.931 3 N -0.378 5.378 4 C 0.357 3.643 5 O -0.420 6.420 6 C -0.132 4.132 7 C -0.239 4.239 8 C -0.116 4.116 9 C -0.233 4.233 10 C 0.096 3.904 11 C -0.489 4.489 12 H 0.099 0.901 13 C -0.146 4.146 14 N -0.408 5.408 15 Si 0.733 3.267 16 H -0.183 1.183 17 H -0.196 1.196 18 H -0.199 1.199 19 C -0.113 4.113 20 C -0.183 4.183 21 C -0.176 4.176 22 C -0.179 4.179 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.113 0.887 26 H 0.234 0.766 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.152 0.848 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.000 -9.688 -6.394 11.608 hybrid contribution 0.084 0.561 0.153 0.588 sum 0.084 -9.127 -6.242 11.057 Atomic orbital electron populations 1.21989 0.92690 1.02732 1.03601 1.21624 0.94190 0.81052 0.96264 1.45998 1.43421 1.11631 1.36797 1.18814 0.80970 0.85127 0.79430 1.90611 1.32201 1.80394 1.38776 1.19529 1.00844 0.92501 1.00312 1.20346 1.03970 0.96874 1.02684 1.20434 0.99120 0.93730 0.98351 1.21095 1.01676 0.98788 1.01721 1.17608 0.89215 0.92298 0.91271 1.19621 1.34967 0.94572 0.99755 0.90062 1.25965 0.94698 0.95815 0.98082 1.69801 1.33718 1.18083 1.19161 0.86245 0.79955 0.81189 0.79291 1.18331 1.19556 1.19915 1.21641 0.99856 0.92774 0.97032 1.23401 1.01733 0.95570 0.97575 1.22745 1.02078 0.96107 0.96684 1.23297 1.01338 0.96178 0.97061 0.92788 0.92192 0.88729 0.76649 0.89301 0.88956 0.88655 0.90506 0.84842 0.89941 0.90964 0.90052 0.91228 0.90935 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 8.95 37.16 0.33 -1.92 16 2 C 0.16 2.24 1.25 -131.01 -0.16 2.08 16 3 N -0.73 -12.27 5.27 -47.78 -0.25 -12.52 16 4 C 0.57 12.39 7.53 -12.31 -0.09 12.30 16 5 O -0.54 -13.32 13.94 5.32 0.07 -13.24 16 6 C -0.13 -3.06 5.87 -105.04 -0.62 -3.68 16 7 C -0.22 -4.64 9.55 -38.92 -0.37 -5.01 16 8 C -0.10 -2.11 10.01 -39.72 -0.40 -2.51 16 9 C -0.21 -5.10 9.78 -38.81 -0.38 -5.48 16 10 C 0.10 2.63 5.57 -106.87 -0.60 2.03 16 11 C -0.46 -12.17 9.05 -37.73 -0.34 -12.51 16 12 H 0.08 2.04 7.91 -52.49 -0.41 1.63 16 13 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 14 N -0.78 -20.88 10.96 55.55 0.61 -20.28 16 15 Si 0.91 18.85 29.59 -169.99 -5.03 13.82 16 16 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 17 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 18 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 19 C -0.09 -2.49 8.24 -38.44 -0.32 -2.81 16 20 C -0.14 -1.98 7.45 -25.83 -0.19 -2.17 16 21 C -0.14 -1.43 7.74 -25.83 -0.20 -1.63 16 22 C -0.14 -1.52 7.37 -25.92 -0.19 -1.71 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.74 7.34 -51.93 -0.38 0.36 16 25 H 0.09 1.74 5.57 -51.93 -0.29 1.45 16 26 H 0.40 5.88 6.66 -40.82 -0.27 5.61 16 27 H 0.09 1.56 6.38 -52.49 -0.33 1.22 16 28 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 29 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 30 H 0.28 6.93 8.30 -40.82 -0.34 6.60 16 31 H 0.13 3.87 5.75 -52.48 -0.30 3.57 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 34 H 0.08 0.77 7.64 -51.93 -0.40 0.37 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.08 0.84 8.13 -51.93 -0.42 0.42 16 LS Contribution 304.98 15.07 4.60 4.60 Total: -1.00 -29.16 304.98 -8.52 -37.68 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -4.90 Total: 11.18 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -3.61 Total: -21.23 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.36 Total: -32.80 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.07 Total: -13.24 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.16 -8.52 -37.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178885827.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.159 kcal (2) G-P(sol) polarization free energy of solvation -29.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds