Wall clock time and date at job start Mon Mar 30 2020 00:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 112.84966 * 2 1 4 4 C 1.34779 * 120.00043 * 50.32721 * 3 2 1 5 5 O 1.21546 * 119.99707 * 0.02562 * 4 3 2 6 6 C 1.47884 * 119.99844 * 180.27430 * 4 3 2 7 7 C 1.39924 * 120.02350 * 359.72855 * 6 4 3 8 8 C 1.38334 * 120.35507 * 180.02562 * 7 6 4 9 9 C 1.37755 * 120.41178 * 359.97438 * 8 7 6 10 10 C 1.40749 * 120.04123 * 0.02562 * 9 8 7 11 11 C 1.41433 * 120.17876 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99765 * 24.33851 * 11 10 9 13 13 C 1.39934 * 120.00172 * 204.34308 * 11 10 9 14 14 N 1.30833 * 120.00119 * 17.73650 * 13 11 10 15 15 Si 1.86801 * 119.99912 * 197.73681 * 13 11 10 16 16 H 1.48493 * 109.47329 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47131 * 120.00170 * 15 13 11 18 18 H 1.48500 * 109.46865 * 239.99697 * 15 13 11 19 19 C 1.38991 * 120.02618 * 179.45775 * 6 4 3 20 20 C 1.53778 * 113.61131 * 131.19605 * 2 1 3 21 21 C 1.53950 * 87.02095 * 89.22677 * 20 2 1 22 22 C 1.53778 * 113.61246 * 228.80226 * 2 1 3 23 23 H 1.09005 * 109.46966 * 69.66563 * 1 2 3 24 24 H 1.08995 * 109.47407 * 189.66832 * 1 2 3 25 25 H 1.08999 * 109.47364 * 309.66770 * 1 2 3 26 26 H 0.97003 * 119.99967 * 230.33629 * 3 2 1 27 27 H 1.07995 * 119.82230 * 359.97438 * 7 6 4 28 28 H 1.07999 * 119.78936 * 179.97438 * 8 7 6 29 29 H 1.07998 * 119.97265 * 179.97438 * 9 8 7 30 30 H 0.96989 * 119.99864 * 180.02562 * 14 13 11 31 31 H 1.08003 * 120.20106 * 359.97116 * 19 6 4 32 32 H 1.09005 * 113.61282 * 203.75337 * 20 2 1 33 33 H 1.09000 * 113.61579 * 334.65043 * 20 2 1 34 34 H 1.08997 * 113.53984 * 270.80951 * 21 20 2 35 35 H 1.09001 * 113.74038 * 139.94059 * 21 20 2 36 36 H 1.08993 * 113.61552 * 25.34928 * 22 2 1 37 37 H 1.08997 * 113.61404 * 156.25868 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0989 1.3500 0.0000 4 6 1.6739 2.2604 0.8984 5 8 0.8190 1.9611 1.7089 6 6 2.2438 3.6250 0.8945 7 6 3.2284 3.9698 -0.0381 8 6 3.7666 5.2441 -0.0476 9 6 3.3395 6.1883 0.8601 10 6 2.3500 5.8598 1.8056 11 6 1.9090 6.8270 2.7385 12 1 2.0056 7.8787 2.5124 13 6 1.3475 6.4215 3.9544 14 7 1.5367 5.2016 4.3877 15 14 0.3280 7.6219 4.9589 16 1 0.2647 8.9277 4.2547 17 1 -1.0459 7.0840 5.1277 18 1 0.9540 7.8078 6.2925 19 6 1.7979 4.5676 1.8134 20 6 2.1459 -0.9280 1.0602 21 6 2.0949 -2.0420 -0.0012 22 6 2.1460 -0.9281 -1.0602 23 1 -0.3633 0.3571 -0.9637 24 1 -0.3634 -1.0130 0.1726 25 1 -0.3634 0.6560 0.7910 26 1 2.7814 1.5888 -0.6467 27 1 3.5705 3.2370 -0.7537 28 1 4.5263 5.5003 -0.7711 29 1 3.7648 7.1809 0.8466 30 1 1.1472 4.9204 5.2303 31 1 1.0347 4.3073 2.5318 32 1 3.1585 -0.6477 1.3507 33 1 1.4939 -1.1079 1.9149 34 1 1.1594 -2.6013 -0.0006 35 1 2.9736 -2.6869 -0.0031 36 1 1.4939 -1.1080 -1.9149 37 1 3.1585 -0.6478 -1.3505 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178885827.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:02:49 Heat of formation + Delta-G solvation = -22.742498 kcal Electronic energy + Delta-G solvation = -18996.324024 eV Core-core repulsion = 16123.713164 eV Total energy + Delta-G solvation = -2872.610860 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.44272 -39.67437 -38.45935 -35.64674 -34.36680 -31.92341 -31.28210 -29.77047 -27.23592 -26.68455 -25.31920 -23.46553 -22.77999 -21.04592 -19.85824 -19.44705 -18.04342 -17.25918 -16.93152 -16.45180 -16.06702 -15.79541 -15.51978 -15.08187 -14.56616 -14.48095 -14.25992 -13.71966 -13.45469 -13.23089 -13.15969 -12.97335 -12.80164 -12.55367 -12.37052 -12.19222 -12.12463 -11.81367 -11.55490 -11.50770 -11.33504 -11.08959 -10.42792 -9.99161 -9.46266 -9.38623 -8.67623 -6.39237 0.39965 0.99954 1.35423 1.45857 1.51968 2.12745 2.18904 2.33024 2.78702 3.50270 3.65881 3.71434 3.87430 3.91058 4.06592 4.41852 4.55019 4.60295 4.64703 4.73409 4.85394 4.87533 4.90868 5.05365 5.08086 5.09260 5.14494 5.19637 5.28152 5.32348 5.49664 5.51992 5.72692 5.87320 5.93585 6.05073 6.28612 6.53829 6.75939 6.87271 6.94429 7.40870 8.29409 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.027257 B = 0.005318 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.028807 B = 5263.616497 C = 5998.331853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.133 3.867 3 N -0.704 5.704 4 C 0.560 3.440 5 O -0.580 6.580 6 C -0.140 4.140 7 C -0.199 4.199 8 C -0.096 4.096 9 C -0.219 4.219 10 C 0.067 3.933 11 C -0.498 4.498 12 H 0.084 0.916 13 C 0.030 3.970 14 N -0.826 5.826 15 Si 0.983 3.017 16 H -0.251 1.251 17 H -0.271 1.271 18 H -0.263 1.263 19 C -0.133 4.133 20 C -0.156 4.156 21 C -0.121 4.121 22 C -0.122 4.122 23 H 0.062 0.938 24 H 0.084 0.916 25 H 0.050 0.950 26 H 0.410 0.590 27 H 0.136 0.864 28 H 0.139 0.861 29 H 0.108 0.892 30 H 0.286 0.714 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.982 -10.500 -9.775 14.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.047 3.953 3 N -0.356 5.356 4 C 0.350 3.650 5 O -0.461 6.461 6 C -0.144 4.144 7 C -0.219 4.219 8 C -0.114 4.114 9 C -0.239 4.239 10 C 0.065 3.935 11 C -0.528 4.528 12 H 0.102 0.898 13 C -0.185 4.185 14 N -0.452 5.452 15 Si 0.803 3.197 16 H -0.174 1.174 17 H -0.196 1.196 18 H -0.188 1.188 19 C -0.153 4.153 20 C -0.195 4.195 21 C -0.159 4.159 22 C -0.160 4.160 23 H 0.081 0.919 24 H 0.102 0.898 25 H 0.069 0.931 26 H 0.249 0.751 27 H 0.154 0.846 28 H 0.157 0.843 29 H 0.126 0.874 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.348 -10.891 -9.031 14.212 hybrid contribution -0.233 0.816 0.805 1.170 sum 1.114 -10.074 -8.226 13.054 Atomic orbital electron populations 1.21924 0.93240 1.03198 1.02410 1.22099 0.94166 0.79904 0.99093 1.45866 1.42739 1.11844 1.35168 1.18710 0.80800 0.85368 0.80131 1.90608 1.33900 1.80979 1.40593 1.19889 1.01295 0.93111 1.00069 1.20864 1.01535 0.97843 1.01627 1.20930 0.99313 0.93017 0.98109 1.21410 1.00906 1.00148 1.01441 1.17956 0.90472 0.92540 0.92557 1.19897 1.37252 0.94769 1.00837 0.89813 1.26864 0.95229 0.97474 0.98952 1.69902 1.35264 1.20204 1.19846 0.85152 0.77854 0.78855 0.77837 1.17361 1.19561 1.18794 1.21447 1.00954 0.94327 0.98589 1.23460 1.00672 0.97574 0.97764 1.22720 1.03729 0.95377 0.94044 1.23273 1.02130 0.93967 0.96634 0.91851 0.89771 0.93090 0.75147 0.84617 0.84344 0.87384 0.90347 0.88400 0.90749 0.93057 0.88809 0.89178 0.88950 0.88156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.31 8.95 71.98 0.64 -3.67 16 2 C 0.13 3.59 1.25 4.13 0.01 3.60 16 3 N -0.70 -22.70 5.27 -423.34 -2.23 -24.93 16 4 C 0.56 24.97 7.53 86.80 0.65 25.62 16 5 O -0.58 -30.17 13.94 -3.86 -0.05 -30.23 16 6 C -0.14 -6.76 5.87 -20.13 -0.12 -6.88 16 7 C -0.20 -7.92 9.55 22.70 0.22 -7.70 16 8 C -0.10 -3.84 10.01 22.18 0.22 -3.62 16 9 C -0.22 -10.40 9.78 22.77 0.22 -10.18 16 10 C 0.07 3.71 5.57 -21.32 -0.12 3.59 16 11 C -0.50 -27.60 9.05 23.47 0.21 -27.39 16 12 H 0.08 4.38 7.91 -2.91 -0.02 4.36 16 13 C 0.03 1.57 5.14 85.25 0.44 2.01 16 14 N -0.83 -46.99 10.96 21.82 0.24 -46.75 16 15 Si 0.98 40.24 29.59 68.60 2.03 42.27 16 16 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 17 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 18 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 19 C -0.13 -7.51 8.24 23.01 0.19 -7.32 16 20 C -0.16 -4.10 7.45 31.18 0.23 -3.87 16 21 C -0.12 -2.05 7.74 31.18 0.24 -1.81 16 22 C -0.12 -2.11 7.37 31.12 0.23 -1.88 16 23 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 24 H 0.08 1.95 7.34 -2.39 -0.02 1.93 16 25 H 0.05 1.95 5.57 -2.39 -0.01 1.93 16 26 H 0.41 10.72 6.66 -92.71 -0.62 10.10 16 27 H 0.14 4.07 6.38 -2.91 -0.02 4.05 16 28 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 29 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 30 H 0.29 14.95 8.30 -92.72 -0.77 14.18 16 31 H 0.10 6.18 5.75 -2.91 -0.02 6.16 16 32 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 33 H 0.05 1.53 8.10 -2.39 -0.02 1.51 16 34 H 0.09 1.39 7.64 -2.39 -0.02 1.37 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 36 H 0.09 1.30 8.10 -2.39 -0.02 1.28 16 37 H 0.10 1.47 8.13 -2.39 -0.02 1.45 16 Total: -1.00 -69.46 304.98 3.72 -65.74 By element: Atomic # 1 Polarization: 32.93 SS G_CDS: 0.46 Total: 33.39 kcal Atomic # 6 Polarization: -42.77 SS G_CDS: 3.27 Total: -39.50 kcal Atomic # 7 Polarization: -69.68 SS G_CDS: -1.99 Total: -71.68 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.05 Total: -30.23 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -69.46 3.72 -65.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178885827.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.000 kcal (2) G-P(sol) polarization free energy of solvation -69.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds