Wall clock time and date at job start Sun Mar 29 2020 23:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86805 * 119.99776 * 2 1 4 4 H 1.48495 * 109.47038 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46859 * 299.99759 * 3 2 1 6 6 H 1.48501 * 109.47236 * 59.99847 * 3 2 1 7 7 C 1.39861 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00214 * 197.95987 * 7 2 1 9 9 C 1.41139 * 119.99795 * 17.96268 * 7 2 1 10 10 C 1.40884 * 120.15186 * 204.59474 * 9 7 2 11 11 C 1.36347 * 119.83458 * 180.02562 * 10 9 7 12 12 C 1.39561 * 120.15850 * 0.02562 * 11 10 9 13 13 N 1.38862 * 119.83948 * 179.97438 * 12 11 10 14 14 C 1.46506 * 120.00076 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.46968 * 179.97438 * 14 13 12 16 16 C 1.29983 * 118.56310 * 95.00324 * 15 14 13 17 17 C 1.50385 * 122.51004 * 180.38377 * 16 15 14 18 18 C 1.53129 * 109.59595 * 343.37417 * 17 16 15 19 19 O 1.43309 * 108.41174 * 47.82391 * 18 17 16 20 20 C 1.42885 * 113.02285 * 291.85164 * 19 18 17 21 21 C 1.39568 * 120.31969 * 0.25263 * 12 11 10 22 22 C 1.36337 * 120.15614 * 359.48979 * 21 12 11 23 23 H 0.97008 * 120.00250 * 359.97438 * 1 2 3 24 24 H 1.07997 * 120.08795 * 0.02562 * 10 9 7 25 25 H 1.07993 * 119.91735 * 179.97438 * 11 10 9 26 26 H 0.97000 * 120.00119 * 359.97438 * 13 12 11 27 27 H 1.09006 * 109.46537 * 59.99507 * 14 13 12 28 28 H 1.08996 * 109.46770 * 300.00387 * 14 13 12 29 29 H 1.07997 * 118.74543 * 0.40709 * 16 15 14 30 30 H 1.09001 * 109.45573 * 223.33710 * 17 16 15 31 31 H 1.08998 * 109.42819 * 103.39785 * 17 16 15 32 32 H 1.09000 * 109.67847 * 167.56139 * 18 17 16 33 33 H 1.08996 * 109.68467 * 288.07978 * 18 17 16 34 34 H 1.08994 * 109.33092 * 289.92981 * 20 19 18 35 35 H 1.08998 * 109.25909 * 170.27744 * 20 19 18 36 36 H 1.08004 * 119.92296 * 179.72409 * 21 12 11 37 37 H 1.08002 * 120.08020 * 180.23339 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.7029 1.3465 -0.0006 5 1 1.8842 2.3964 -1.2126 6 1 1.8842 2.3965 1.2125 7 6 2.0083 -1.2112 0.0005 8 1 3.0488 -1.2339 0.2889 9 6 1.3542 -2.4039 -0.3759 10 6 1.8267 -3.6471 0.0888 11 6 1.1902 -4.7953 -0.2793 12 6 0.0735 -4.7410 -1.1147 13 7 -0.5694 -5.9145 -1.4859 14 6 -1.7423 -5.8616 -2.3622 15 6 -2.2469 -7.2596 -2.6111 16 6 -3.2043 -7.7175 -1.8606 17 6 -3.7688 -9.1016 -2.0255 18 6 -3.3640 -9.6620 -3.3918 19 8 -1.9591 -9.4440 -3.5723 20 6 -1.6219 -8.0630 -3.7160 21 6 -0.3967 -3.5134 -1.5835 22 6 0.2268 -2.3569 -1.2193 23 1 -0.4851 0.8401 0.0004 24 1 2.6910 -3.6907 0.7349 25 1 1.5515 -5.7491 0.0757 26 1 -0.2420 -6.7693 -1.1650 27 1 -1.4665 -5.4009 -3.3109 28 1 -2.5253 -5.2716 -1.8859 29 1 -3.6101 -7.0796 -1.0894 30 1 -4.8560 -9.0607 -1.9576 31 1 -3.3801 -9.7479 -1.2385 32 1 -3.5774 -10.7303 -3.4283 33 1 -3.9190 -9.1498 -4.1778 34 1 -1.9867 -7.7006 -4.6771 35 1 -0.5384 -7.9514 -3.6755 36 1 -1.2587 -3.4792 -2.2333 37 1 -0.1404 -1.4073 -1.5798 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185145017.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:29 Heat of formation + Delta-G solvation = -27.989525 kcal Electronic energy + Delta-G solvation = -18277.425997 eV Core-core repulsion = 15404.587609 eV Total energy + Delta-G solvation = -2872.838388 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.56102 -39.65772 -37.09107 -35.39534 -34.16205 -32.44882 -31.36082 -30.29773 -27.43986 -26.41291 -25.64735 -23.87513 -22.80692 -21.72916 -19.17914 -19.15423 -18.03038 -17.27210 -17.06420 -16.82179 -16.46076 -15.73656 -15.32608 -15.29094 -14.61465 -14.42635 -14.26873 -14.11497 -13.82504 -13.59439 -13.57047 -13.12310 -13.01098 -12.74518 -12.58791 -12.32449 -12.18336 -11.58599 -11.50045 -11.21201 -11.08226 -10.58423 -10.31416 -9.97265 -9.41754 -8.55565 -8.18395 -6.01446 0.97619 1.09442 1.17443 1.40446 1.54697 1.57826 2.27618 2.83677 2.92669 3.04913 3.67078 3.71938 3.85052 4.02138 4.26375 4.36068 4.43424 4.45979 4.48688 4.53120 4.66947 4.72374 4.78883 4.97301 5.01925 5.03705 5.12933 5.27181 5.43618 5.46015 5.67317 5.78753 5.80513 5.95298 6.14828 6.18402 6.38199 6.65812 6.85438 7.08095 7.12111 7.28837 8.48076 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.052489 B = 0.003515 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.322019 B = 7964.933026 C = 8154.903830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.031 3.969 3 Si 0.977 3.023 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.505 4.505 8 H 0.068 0.932 9 C 0.036 3.964 10 C -0.195 4.195 11 C -0.165 4.165 12 C 0.110 3.890 13 N -0.747 5.747 14 C 0.176 3.824 15 C -0.182 4.182 16 C -0.125 4.125 17 C -0.124 4.124 18 C 0.050 3.950 19 O -0.397 6.397 20 C 0.101 3.899 21 C -0.174 4.174 22 C -0.143 4.143 23 H 0.282 0.718 24 H 0.097 0.903 25 H 0.116 0.884 26 H 0.395 0.605 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.204 -14.362 -6.286 17.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.180 4.180 3 Si 0.799 3.201 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.537 4.537 8 H 0.086 0.914 9 C 0.033 3.967 10 C -0.215 4.215 11 C -0.187 4.187 12 C 0.011 3.989 13 N -0.382 5.382 14 C 0.052 3.948 15 C -0.183 4.183 16 C -0.144 4.144 17 C -0.161 4.161 18 C -0.026 4.026 19 O -0.316 6.316 20 C 0.024 3.976 21 C -0.196 4.196 22 C -0.163 4.163 23 H 0.092 0.908 24 H 0.115 0.885 25 H 0.134 0.866 26 H 0.229 0.771 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.128 0.872 30 H 0.123 0.877 31 H 0.105 0.895 32 H 0.134 0.866 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.409 -14.280 -6.401 17.765 hybrid contribution 0.269 1.062 0.425 1.175 sum -8.140 -13.218 -5.976 16.634 Atomic orbital electron populations 1.69926 1.08763 1.29742 1.38534 1.26620 0.95463 1.04128 0.91828 0.85241 0.79378 0.76813 0.78691 1.18451 1.19108 1.19347 1.19617 0.98021 0.92755 1.43263 0.91419 1.17825 0.93552 0.93043 0.92288 1.20758 1.03061 0.92833 1.04884 1.20100 0.97843 0.97644 1.03135 1.17461 0.94966 0.86519 0.99967 1.43930 1.32681 1.04929 1.56694 1.19989 0.87726 0.93508 0.93625 1.21624 0.99563 0.96577 1.00527 1.22446 0.96317 0.97814 0.97851 1.21203 1.02516 0.93247 0.99158 1.22895 0.81129 1.02800 0.95808 1.88110 1.25556 1.24272 1.93655 1.21323 1.00349 0.80364 0.95517 1.20243 1.02193 0.91829 1.05383 1.20861 0.98946 0.96680 0.99862 0.90753 0.88477 0.86605 0.77114 0.92945 0.93531 0.87185 0.87663 0.89490 0.86568 0.91905 0.90763 0.88346 0.87714 0.88253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.28 10.97 21.81 0.24 -46.04 16 2 C 0.03 1.67 5.13 85.22 0.44 2.11 16 3 Si 0.98 40.40 29.60 68.60 2.03 42.43 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 5 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 6 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 7 C -0.51 -28.72 9.03 23.38 0.21 -28.51 16 8 H 0.07 3.74 7.91 -2.91 -0.02 3.72 16 9 C 0.04 2.02 5.57 -21.27 -0.12 1.90 16 10 C -0.20 -9.93 9.74 22.48 0.22 -9.71 16 11 C -0.17 -7.38 9.82 22.15 0.22 -7.16 16 12 C 0.11 4.75 6.67 38.67 0.26 5.01 16 13 N -0.75 -25.20 5.69 -342.69 -1.95 -27.15 16 14 C 0.18 5.05 4.94 85.63 0.42 5.48 16 15 C -0.18 -4.19 5.29 -15.58 -0.08 -4.27 16 16 C -0.13 -2.57 9.53 26.60 0.25 -2.32 16 17 C -0.12 -1.86 6.36 29.79 0.19 -1.67 16 18 C 0.05 0.75 6.89 72.03 0.50 1.24 16 19 O -0.40 -8.64 10.84 -148.98 -1.62 -10.25 16 20 C 0.10 2.15 6.76 71.09 0.48 2.63 16 21 C -0.17 -8.28 9.23 22.15 0.20 -8.07 16 22 C -0.14 -7.83 8.64 22.47 0.19 -7.64 16 23 H 0.28 14.06 8.30 -92.70 -0.77 13.29 16 24 H 0.10 4.68 8.06 -2.91 -0.02 4.65 16 25 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 26 H 0.39 12.05 8.46 -92.71 -0.78 11.27 16 27 H 0.05 1.53 7.90 -2.38 -0.02 1.51 16 28 H 0.05 1.42 7.66 -2.39 -0.02 1.40 16 29 H 0.11 2.34 7.83 -2.91 -0.02 2.32 16 30 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 0.84 8.10 -2.39 -0.02 0.82 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.10 4.49 6.68 -2.91 -0.02 4.47 16 37 H 0.10 5.70 6.16 -2.91 -0.02 5.68 16 Total: -1.00 -63.34 307.85 2.37 -60.97 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: 0.28 Total: 31.02 kcal Atomic # 6 Polarization: -54.37 SS G_CDS: 3.38 Total: -50.98 kcal Atomic # 7 Polarization: -71.48 SS G_CDS: -1.71 Total: -73.19 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -1.62 Total: -10.25 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Total: -63.34 2.37 -60.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185145017.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.985 kcal (2) G-P(sol) polarization free energy of solvation -63.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds