Wall clock time and date at job start Mon Mar 30 2020 00:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38401 * 119.83029 * 2 1 4 4 C 1.37893 * 120.17328 * 180.02562 * 3 2 1 5 5 C 1.39836 * 119.82267 * 359.97438 * 4 3 2 6 6 C 1.47207 * 120.16516 * 179.97438 * 5 4 3 7 7 C 1.34814 * 119.99849 * 180.02562 * 6 5 4 8 8 C 1.46430 * 120.00182 * 180.02562 * 7 6 5 9 9 O 1.21706 * 119.99700 * 359.97438 * 8 7 6 10 10 N 1.34768 * 120.00094 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00056 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.46845 * 35.00845 * 11 10 8 13 13 C 1.52997 * 109.47473 * 275.00296 * 11 10 8 14 14 C 1.50706 * 109.47187 * 154.99900 * 11 10 8 15 15 H 1.07998 * 119.99629 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99955 * 179.97438 * 14 11 10 17 17 N 1.31510 * 120.00308 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99908 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.46848 * 60.00326 * 18 16 14 20 20 H 1.48500 * 109.47035 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47237 * 300.00475 * 18 16 14 22 22 C 1.39832 * 119.66281 * 0.25680 * 5 4 3 23 23 C 1.37896 * 119.82534 * 359.51448 * 22 5 4 24 24 H 1.08992 * 109.47624 * 89.99861 * 1 2 3 25 25 H 1.09002 * 109.47042 * 210.00655 * 1 2 3 26 26 H 1.09003 * 109.47006 * 329.99766 * 1 2 3 27 27 H 1.08002 * 119.91295 * 359.97438 * 3 2 1 28 28 H 1.07995 * 120.08589 * 179.97438 * 4 3 2 29 29 H 1.07997 * 120.00571 * 359.97438 * 6 5 4 30 30 H 1.08003 * 119.99960 * 359.97438 * 7 6 5 31 31 H 0.97001 * 120.00396 * 359.97438 * 10 8 7 32 32 H 1.09002 * 109.47153 * 59.99757 * 13 11 10 33 33 H 1.09001 * 109.46832 * 299.99948 * 13 11 10 34 34 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 35 35 H 0.96998 * 120.00365 * 179.97438 * 17 16 14 36 36 H 1.08000 * 120.08839 * 179.74639 * 22 5 4 37 37 H 1.07998 * 119.91311 * 180.23236 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2006 0.0000 4 6 3.5743 1.2089 -0.0005 5 6 4.2770 -0.0001 -0.0005 6 6 5.7491 -0.0001 -0.0017 7 6 6.4231 -1.1676 -0.0022 8 6 7.8874 -1.1677 -0.0027 9 8 8.4959 -0.1137 -0.0032 10 7 8.5612 -2.3348 -0.0027 11 6 10.0262 -2.3349 -0.0039 12 1 10.3900 -1.4929 0.5850 13 6 10.5352 -2.2098 -1.4413 14 6 10.5290 -3.6224 0.5968 15 1 9.8274 -4.3663 0.9442 16 6 11.8846 -3.8509 0.7019 17 7 12.7389 -2.9453 0.2783 18 14 12.5078 -5.4471 1.4458 19 1 12.0117 -6.5940 0.6434 20 1 13.9928 -5.4471 1.4447 21 1 12.0142 -5.5688 2.8411 22 6 3.5742 -1.2090 -0.0054 23 6 2.1953 -1.2007 -0.0001 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6512 2.1335 -0.0004 28 1 4.1101 2.1466 -0.0010 29 1 6.2891 0.9351 -0.0029 30 1 5.8831 -2.1029 -0.0013 31 1 8.0762 -3.1749 -0.0020 32 1 10.1715 -1.2786 -1.8757 33 1 10.1714 -3.0518 -2.0301 34 1 11.6252 -2.2094 -1.4420 35 1 13.6926 -3.1059 0.3526 36 1 4.1100 -2.1467 -0.0096 37 1 1.6511 -2.1335 -0.0001 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194721052.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:15:06 Heat of formation + Delta-G solvation = -12.317269 kcal Electronic energy + Delta-G solvation = -17793.277858 eV Core-core repulsion = 14921.119070 eV Total energy + Delta-G solvation = -2872.158788 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.57600 -38.71491 -35.02452 -34.34110 -32.35720 -31.43611 -30.95021 -28.96699 -26.84161 -25.24011 -23.35932 -22.84588 -21.26004 -19.89119 -19.05960 -17.36088 -16.51495 -15.67930 -15.37363 -15.16106 -14.93000 -14.18886 -14.06966 -13.90582 -13.64994 -13.36568 -13.02501 -12.48799 -12.47716 -12.37063 -11.89620 -11.69026 -11.36873 -11.07882 -10.98149 -10.95488 -10.73466 -10.32580 -10.21881 -10.05526 -9.11804 -9.10205 -9.03372 -8.53699 -8.18105 -7.82363 -6.10823 -4.20274 0.60089 1.26296 2.13280 3.26548 3.31636 3.32944 3.65455 4.07938 4.12320 4.38911 4.59646 4.64062 4.80578 4.92626 5.04242 5.21309 5.24109 5.29255 5.30964 5.47388 5.53814 5.70841 5.84445 5.92558 6.12864 6.20314 6.39714 6.53735 6.68624 6.82577 6.85917 6.99232 7.17208 7.48127 7.58916 7.71895 7.93772 8.16630 8.69277 8.79716 9.15322 9.47289 10.95212 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.042830 B = 0.003225 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.584681 B = 8679.021607 C = 9128.627715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.123 4.123 4 C -0.098 4.098 5 C -0.066 4.066 6 C -0.051 4.051 7 C -0.186 4.186 8 C 0.528 3.472 9 O -0.559 6.559 10 N -0.702 5.702 11 C 0.263 3.737 12 H 0.049 0.951 13 C -0.147 4.147 14 C -0.535 4.535 15 H 0.061 0.939 16 C 0.066 3.934 17 N -0.884 5.884 18 Si 0.902 3.098 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.103 4.103 23 C -0.122 4.122 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.122 0.878 28 H 0.127 0.873 29 H 0.135 0.865 30 H 0.123 0.877 31 H 0.389 0.611 32 H 0.015 0.985 33 H 0.026 0.974 34 H 0.090 0.910 35 H 0.265 0.735 36 H 0.129 0.871 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.784 3.738 -1.177 22.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.141 4.141 4 C -0.116 4.116 5 C -0.066 4.066 6 C -0.071 4.071 7 C -0.206 4.206 8 C 0.315 3.685 9 O -0.441 6.441 10 N -0.348 5.348 11 C 0.161 3.839 12 H 0.067 0.933 13 C -0.205 4.205 14 C -0.573 4.573 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.521 5.521 18 Si 0.730 3.270 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.202 1.202 22 C -0.121 4.121 23 C -0.140 4.140 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.140 0.860 28 H 0.145 0.855 29 H 0.152 0.848 30 H 0.141 0.859 31 H 0.222 0.778 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.146 0.854 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -21.083 4.486 -1.192 21.588 hybrid contribution 0.190 -1.357 0.363 1.417 sum -20.893 3.130 -0.829 21.142 Atomic orbital electron populations 1.20805 0.91279 1.02756 1.02297 1.20040 0.96068 0.93253 0.99369 1.20956 0.94064 0.97524 1.01576 1.21375 0.94093 0.97491 0.98623 1.19113 0.92898 0.93405 1.01152 1.22271 0.91226 0.99225 0.94394 1.23254 0.94677 0.98791 1.03921 1.18285 0.87327 0.84876 0.77998 1.90761 1.70329 1.31339 1.51659 1.46460 1.10259 1.06705 1.71394 1.18757 0.73013 0.98085 0.94021 0.93300 1.22077 1.04412 0.96723 0.97334 1.21190 0.92098 1.02515 1.41505 0.92110 1.24892 0.96600 0.97066 0.95171 1.69892 1.02418 1.34008 1.45802 0.86498 0.77692 0.83170 0.79667 1.20157 1.21117 1.20171 1.21457 0.94143 0.97776 0.98717 1.20965 0.94051 0.97561 1.01400 0.91164 0.91540 0.91573 0.85958 0.85476 0.84755 0.85891 0.77832 0.96613 0.95461 0.89120 0.92509 0.85366 0.85921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.00 36.00 0.36 -0.38 16 2 C -0.09 -0.80 5.89 -104.50 -0.62 -1.42 16 3 C -0.12 -1.17 9.68 -39.65 -0.38 -1.55 16 4 C -0.10 -1.06 9.80 -39.11 -0.38 -1.44 16 5 C -0.07 -0.81 5.87 -105.06 -0.62 -1.43 16 6 C -0.05 -0.74 9.46 -37.15 -0.35 -1.09 16 7 C -0.19 -2.90 9.41 -37.50 -0.35 -3.25 16 8 C 0.53 11.02 7.71 -12.97 -0.10 10.92 16 9 O -0.56 -13.87 15.89 5.18 0.08 -13.79 16 10 N -0.70 -15.10 5.06 -56.32 -0.29 -15.39 16 11 C 0.26 6.86 2.56 -69.08 -0.18 6.68 16 12 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 13 C -0.15 -3.74 9.26 37.16 0.34 -3.40 16 14 C -0.53 -14.39 8.73 -34.44 -0.30 -14.69 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 16 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 17 N -0.88 -25.20 11.32 55.43 0.63 -24.57 16 18 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 C -0.10 -1.14 9.41 -39.11 -0.37 -1.51 16 23 C -0.12 -1.18 9.68 -39.65 -0.38 -1.56 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 26 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 27 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 28 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 29 H 0.13 2.04 7.52 -52.49 -0.39 1.64 16 30 H 0.12 1.54 6.07 -52.48 -0.32 1.22 16 31 H 0.39 7.17 8.52 -40.82 -0.35 6.82 16 32 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.13 1.26 6.17 -52.49 -0.32 0.94 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 318.62 15.07 4.80 4.80 Total: -1.00 -31.62 318.62 -8.23 -39.85 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.01 Total: 5.73 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -3.42 Total: -12.41 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.34 Total: -39.96 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: 0.08 Total: -13.79 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.62 -8.23 -39.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194721052.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.530 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds