Wall clock time and date at job start Mon Mar 30 2020 00:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38432 * 119.91091 * 2 1 4 4 C 1.38383 * 120.34014 * 179.97438 * 3 2 1 5 5 C 1.37907 * 120.17248 * 0.02562 * 4 3 2 6 6 C 1.39818 * 119.82793 * 359.72461 * 5 4 3 7 7 C 1.47207 * 120.17087 * 180.29848 * 6 5 4 8 8 C 1.34807 * 119.99837 * 0.20790 * 7 6 5 9 9 C 1.46432 * 119.99669 * 180.02562 * 8 7 6 10 10 O 1.21697 * 119.99927 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99990 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00171 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46838 * 325.00078 * 12 11 9 14 14 C 1.52997 * 109.47251 * 84.99505 * 12 11 9 15 15 C 1.50701 * 109.47139 * 204.99903 * 12 11 9 16 16 H 1.08001 * 119.99519 * 359.97438 * 15 12 11 17 17 C 1.37870 * 119.99732 * 179.97438 * 15 12 11 18 18 N 1.31511 * 120.00609 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 119.99732 * 179.97438 * 17 15 12 20 20 H 1.48495 * 109.47265 * 59.99600 * 19 17 15 21 21 H 1.48502 * 109.47479 * 180.02562 * 19 17 15 22 22 H 1.48509 * 109.47101 * 299.99777 * 19 17 15 23 23 C 1.37868 * 119.91679 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.47210 * 270.02443 * 1 2 3 25 25 H 1.08998 * 109.47055 * 30.02596 * 1 2 3 26 26 H 1.08994 * 109.46759 * 150.02370 * 1 2 3 27 27 H 1.07998 * 119.82938 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.90887 * 179.97438 * 4 3 2 29 29 H 1.08003 * 120.08858 * 179.97438 * 5 4 3 30 30 H 1.07996 * 120.00027 * 180.20766 * 7 6 5 31 31 H 1.07996 * 120.00139 * 359.97438 * 8 7 6 32 32 H 0.97006 * 119.99802 * 359.97438 * 11 9 8 33 33 H 1.08998 * 109.47662 * 300.00512 * 14 12 11 34 34 H 1.09007 * 109.47038 * 59.99834 * 14 12 11 35 35 H 1.08999 * 109.47146 * 179.97438 * 14 12 11 36 36 H 0.96996 * 120.00829 * 179.97438 * 18 17 15 37 37 H 1.08002 * 120.08322 * 359.97406 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1999 0.0000 4 6 3.5811 1.2103 0.0005 5 6 4.2831 0.0233 0.0005 6 6 3.5932 -1.1928 0.0058 7 6 4.3350 -2.4643 0.0125 8 6 5.6830 -2.4581 0.0178 9 6 6.4209 -3.7229 0.0238 10 8 5.8171 -4.7796 0.0246 11 7 7.7686 -3.7168 0.0286 12 6 8.5069 -4.9822 0.0352 13 1 7.9607 -5.7183 0.6251 14 6 8.6602 -5.4907 -1.3996 15 6 9.8701 -4.7653 0.6398 16 1 10.1579 -3.7829 0.9842 17 6 10.7498 -5.8208 0.7532 18 7 10.3995 -7.0169 0.3333 19 14 12.4399 -5.5518 1.5019 20 1 12.2915 -5.0572 2.8942 21 1 13.1883 -6.8344 1.5088 22 1 13.1839 -4.5495 0.6973 23 6 2.1946 -1.1950 0.0005 24 1 -0.3634 0.0004 1.0277 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3632 -0.8902 -0.5134 27 1 1.6531 2.1328 -0.0004 28 1 4.1126 2.1505 0.0001 29 1 5.3631 0.0330 0.0005 30 1 3.7992 -3.4020 0.0132 31 1 6.2187 -1.5204 0.0167 32 1 8.2498 -2.8745 0.0276 33 1 7.6742 -5.6476 -1.8369 34 1 9.2063 -4.7545 -1.9896 35 1 9.2099 -6.4320 -1.3947 36 1 11.0185 -7.7594 0.4127 37 1 1.6546 -2.1303 0.0014 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194722514.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:15:09 Heat of formation + Delta-G solvation = -12.220355 kcal Electronic energy + Delta-G solvation = -17824.146629 eV Core-core repulsion = 14951.992043 eV Total energy + Delta-G solvation = -2872.154585 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.57942 -38.71910 -34.98538 -34.22357 -32.37985 -32.30727 -30.17419 -28.65938 -27.01187 -25.25291 -24.13118 -22.23243 -21.37954 -19.72801 -18.87228 -17.43777 -16.66907 -15.87484 -15.46159 -14.99328 -14.87887 -14.19420 -14.06731 -13.90108 -13.59104 -13.29833 -13.03978 -12.47051 -12.44755 -12.37311 -11.92226 -11.69231 -11.33177 -11.07567 -11.01360 -10.95806 -10.74160 -10.33228 -10.22297 -10.16915 -9.10867 -9.03714 -8.91692 -8.53965 -8.26441 -7.83954 -6.11007 -4.20513 0.61417 1.23276 2.14751 3.26439 3.31538 3.32837 3.65425 4.07101 4.10782 4.37988 4.60072 4.67425 4.79011 4.93901 5.10586 5.21047 5.23433 5.28852 5.35049 5.42296 5.58660 5.69713 5.82329 5.94501 6.11219 6.26553 6.37430 6.53301 6.67915 6.82781 6.85680 6.98992 7.16942 7.47693 7.58572 7.71615 7.93483 8.16378 8.68790 8.79392 9.14734 9.47068 10.95031 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.044232 B = 0.003255 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.879326 B = 8599.033285 C = 9008.170101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.090 4.090 3 C -0.120 4.120 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.056 4.056 7 C -0.053 4.053 8 C -0.183 4.183 9 C 0.528 3.472 10 O -0.559 6.559 11 N -0.702 5.702 12 C 0.263 3.737 13 H 0.049 0.951 14 C -0.147 4.147 15 C -0.535 4.535 16 H 0.061 0.939 17 C 0.066 3.934 18 N -0.884 5.884 19 Si 0.902 3.098 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 C -0.103 4.103 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.120 0.880 28 H 0.123 0.877 29 H 0.128 0.872 30 H 0.135 0.865 31 H 0.124 0.876 32 H 0.389 0.611 33 H 0.015 0.985 34 H 0.026 0.974 35 H 0.090 0.910 36 H 0.265 0.735 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.713 15.935 -1.234 21.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.090 4.090 3 C -0.138 4.138 4 C -0.135 4.135 5 C -0.131 4.131 6 C -0.056 4.056 7 C -0.073 4.073 8 C -0.204 4.204 9 C 0.315 3.685 10 O -0.441 6.441 11 N -0.348 5.348 12 C 0.161 3.839 13 H 0.067 0.933 14 C -0.206 4.206 15 C -0.573 4.573 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.521 5.521 19 Si 0.730 3.270 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.202 1.202 23 C -0.121 4.121 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.138 0.862 28 H 0.141 0.859 29 H 0.146 0.854 30 H 0.153 0.847 31 H 0.142 0.858 32 H 0.222 0.778 33 H 0.034 0.966 34 H 0.045 0.955 35 H 0.109 0.891 36 H 0.075 0.925 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.009 14.947 -1.249 21.219 hybrid contribution 1.304 0.585 0.377 1.478 sum -13.705 15.533 -0.872 20.733 Atomic orbital electron populations 1.20795 0.91112 1.02801 1.02371 1.19852 0.96129 0.93059 1.00006 1.21124 0.94305 0.97404 1.00981 1.21068 0.94205 0.98018 1.00221 1.21455 1.00240 0.91764 0.99644 1.19109 0.93256 0.92960 1.00236 1.22270 0.94155 0.96300 0.94542 1.23268 0.95304 0.98196 1.03650 1.18285 0.83296 0.88906 0.78022 1.90760 1.68788 1.32875 1.51629 1.46466 1.05216 1.11752 1.71370 1.18757 0.90560 0.80519 0.94030 0.93295 1.22077 0.98173 1.02976 0.97324 1.21189 0.98765 0.95913 1.41453 0.92105 1.24890 0.98721 0.94925 0.95182 1.69890 1.36236 1.00156 1.45841 0.86499 0.83374 0.77476 0.79680 1.20167 1.21115 1.20162 1.21261 0.93076 0.97902 0.99847 0.91150 0.91598 0.91426 0.86191 0.85858 0.85424 0.84739 0.85844 0.77823 0.96608 0.95462 0.89118 0.92505 0.85555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.01 0.36 -0.43 16 2 C -0.09 -0.87 5.87 -104.68 -0.61 -1.49 16 3 C -0.12 -1.10 9.69 -39.46 -0.38 -1.48 16 4 C -0.12 -1.12 10.03 -39.65 -0.40 -1.52 16 5 C -0.11 -1.25 9.41 -39.11 -0.37 -1.62 16 6 C -0.06 -0.69 5.87 -105.06 -0.62 -1.30 16 7 C -0.05 -0.76 9.46 -37.16 -0.35 -1.11 16 8 C -0.18 -2.86 9.41 -37.50 -0.35 -3.22 16 9 C 0.53 11.00 7.71 -12.96 -0.10 10.90 16 10 O -0.56 -13.85 15.89 5.19 0.08 -13.76 16 11 N -0.70 -15.07 5.06 -56.32 -0.29 -15.36 16 12 C 0.26 6.85 2.56 -69.08 -0.18 6.68 16 13 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 14 C -0.15 -3.74 9.26 37.16 0.34 -3.40 16 15 C -0.53 -14.38 8.73 -34.44 -0.30 -14.68 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 17 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 18 N -0.88 -25.18 11.32 55.43 0.63 -24.56 16 19 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 C -0.10 -1.13 9.44 -39.11 -0.37 -1.50 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 26 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 27 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 28 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 29 H 0.13 1.26 6.17 -52.48 -0.32 0.94 16 30 H 0.13 2.04 7.52 -52.49 -0.39 1.65 16 31 H 0.12 1.54 6.07 -52.49 -0.32 1.23 16 32 H 0.39 7.15 8.52 -40.82 -0.35 6.81 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 318.63 15.07 4.80 4.80 Total: -1.00 -31.57 318.63 -8.23 -39.80 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -5.01 Total: 5.79 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -3.42 Total: -12.47 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.34 Total: -39.91 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.08 Total: -13.76 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.57 -8.23 -39.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194722514.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.576 kcal (2) G-P(sol) polarization free energy of solvation -31.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds