Wall clock time and date at job start Mon Mar 30 2020 00:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38432 * 119.91091 * 2 1 4 4 C 1.38383 * 120.34014 * 179.97438 * 3 2 1 5 5 C 1.37907 * 120.17248 * 0.02562 * 4 3 2 6 6 C 1.39818 * 119.82793 * 359.72461 * 5 4 3 7 7 C 1.47207 * 120.17087 * 180.29848 * 6 5 4 8 8 C 1.34807 * 119.99837 * 0.20790 * 7 6 5 9 9 C 1.46432 * 119.99669 * 180.02562 * 8 7 6 10 10 O 1.21697 * 119.99927 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99990 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00171 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46838 * 325.00078 * 12 11 9 14 14 C 1.52997 * 109.47251 * 84.99505 * 12 11 9 15 15 C 1.50701 * 109.47139 * 204.99903 * 12 11 9 16 16 H 1.08001 * 119.99519 * 359.97438 * 15 12 11 17 17 C 1.37870 * 119.99732 * 179.97438 * 15 12 11 18 18 N 1.31511 * 120.00609 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 119.99732 * 179.97438 * 17 15 12 20 20 H 1.48495 * 109.47265 * 59.99600 * 19 17 15 21 21 H 1.48502 * 109.47479 * 180.02562 * 19 17 15 22 22 H 1.48509 * 109.47101 * 299.99777 * 19 17 15 23 23 C 1.37868 * 119.91679 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.47210 * 270.02443 * 1 2 3 25 25 H 1.08998 * 109.47055 * 30.02596 * 1 2 3 26 26 H 1.08994 * 109.46759 * 150.02370 * 1 2 3 27 27 H 1.07998 * 119.82938 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.90887 * 179.97438 * 4 3 2 29 29 H 1.08003 * 120.08858 * 179.97438 * 5 4 3 30 30 H 1.07996 * 120.00027 * 180.20766 * 7 6 5 31 31 H 1.07996 * 120.00139 * 359.97438 * 8 7 6 32 32 H 0.97006 * 119.99802 * 359.97438 * 11 9 8 33 33 H 1.08998 * 109.47662 * 300.00512 * 14 12 11 34 34 H 1.09007 * 109.47038 * 59.99834 * 14 12 11 35 35 H 1.08999 * 109.47146 * 179.97438 * 14 12 11 36 36 H 0.96996 * 120.00829 * 179.97438 * 18 17 15 37 37 H 1.08002 * 120.08322 * 359.97406 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1999 0.0000 4 6 3.5811 1.2103 0.0005 5 6 4.2831 0.0233 0.0005 6 6 3.5932 -1.1928 0.0058 7 6 4.3350 -2.4643 0.0125 8 6 5.6830 -2.4581 0.0178 9 6 6.4209 -3.7229 0.0238 10 8 5.8171 -4.7796 0.0246 11 7 7.7686 -3.7168 0.0286 12 6 8.5069 -4.9822 0.0352 13 1 7.9607 -5.7183 0.6251 14 6 8.6602 -5.4907 -1.3996 15 6 9.8701 -4.7653 0.6398 16 1 10.1579 -3.7829 0.9842 17 6 10.7498 -5.8208 0.7532 18 7 10.3995 -7.0169 0.3333 19 14 12.4399 -5.5518 1.5019 20 1 12.2915 -5.0572 2.8942 21 1 13.1883 -6.8344 1.5088 22 1 13.1839 -4.5495 0.6973 23 6 2.1946 -1.1950 0.0005 24 1 -0.3634 0.0004 1.0277 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3632 -0.8902 -0.5134 27 1 1.6531 2.1328 -0.0004 28 1 4.1126 2.1505 0.0001 29 1 5.3631 0.0330 0.0005 30 1 3.7992 -3.4020 0.0132 31 1 6.2187 -1.5204 0.0167 32 1 8.2498 -2.8745 0.0276 33 1 7.6742 -5.6476 -1.8369 34 1 9.2063 -4.7545 -1.9896 35 1 9.2099 -6.4320 -1.3947 36 1 11.0185 -7.7594 0.4127 37 1 1.6546 -2.1303 0.0014 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194722514.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:15:08 Heat of formation + Delta-G solvation = -30.990652 kcal Electronic energy + Delta-G solvation = -17824.960570 eV Core-core repulsion = 14951.992043 eV Total energy + Delta-G solvation = -2872.968527 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.71026 -40.10185 -36.82378 -35.35931 -34.32469 -33.11393 -31.51915 -30.27346 -27.68686 -27.36158 -25.41246 -23.07184 -22.87531 -21.42028 -20.21213 -18.89600 -17.96756 -17.25360 -17.13375 -16.37091 -15.83896 -15.81446 -15.59412 -14.83530 -14.65062 -14.46591 -14.35364 -14.04118 -13.72678 -13.17455 -13.14530 -13.00365 -12.89209 -12.88043 -12.74455 -12.28514 -12.16594 -12.08461 -11.81526 -11.22389 -11.13334 -10.86044 -10.59646 -9.82259 -9.66812 -9.14885 -8.18291 -6.36525 -0.40432 0.47179 1.07233 1.44702 1.47307 1.55156 2.34889 2.41610 2.65220 2.95005 3.11950 3.70590 3.81309 4.01249 4.13037 4.20392 4.35961 4.46138 4.48748 4.72826 4.76086 4.85907 4.90147 4.95692 5.00807 5.07062 5.16721 5.26834 5.32724 5.43185 5.55190 5.59124 5.66237 5.68905 5.69696 5.90879 6.07326 6.07927 6.70847 6.95396 7.30812 7.53098 8.88173 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.044232 B = 0.003255 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.879326 B = 8599.033285 C = 9008.170101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.098 4.098 3 C -0.114 4.114 4 C -0.121 4.121 5 C -0.118 4.118 6 C -0.084 4.084 7 C -0.026 4.026 8 C -0.202 4.202 9 C 0.525 3.475 10 O -0.610 6.610 11 N -0.698 5.698 12 C 0.269 3.731 13 H -0.003 1.003 14 C -0.134 4.134 15 C -0.550 4.550 16 H 0.075 0.925 17 C 0.013 3.987 18 N -0.919 5.919 19 Si 0.975 3.025 20 H -0.270 1.270 21 H -0.286 1.286 22 H -0.263 1.263 23 C -0.113 4.113 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.148 0.852 28 H 0.150 0.850 29 H 0.138 0.862 30 H 0.118 0.882 31 H 0.159 0.841 32 H 0.407 0.593 33 H 0.010 0.990 34 H 0.041 0.959 35 H 0.068 0.932 36 H 0.266 0.734 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.943 19.310 -1.011 24.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.098 4.098 3 C -0.132 4.132 4 C -0.139 4.139 5 C -0.136 4.136 6 C -0.084 4.084 7 C -0.046 4.046 8 C -0.222 4.222 9 C 0.315 3.685 10 O -0.495 6.495 11 N -0.346 5.346 12 C 0.165 3.835 13 H 0.015 0.985 14 C -0.193 4.193 15 C -0.588 4.588 16 H 0.093 0.907 17 C -0.187 4.187 18 N -0.557 5.557 19 Si 0.800 3.200 20 H -0.195 1.195 21 H -0.211 1.211 22 H -0.187 1.187 23 C -0.131 4.131 24 H 0.097 0.903 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.166 0.834 28 H 0.168 0.832 29 H 0.156 0.844 30 H 0.136 0.864 31 H 0.177 0.823 32 H 0.242 0.758 33 H 0.029 0.971 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.242 18.373 -1.031 23.895 hybrid contribution 1.164 -0.393 0.302 1.265 sum -14.078 17.980 -0.728 22.848 Atomic orbital electron populations 1.20848 0.89229 1.03755 1.03168 1.20197 0.97630 0.92692 0.99305 1.21557 0.94481 0.98333 0.98836 1.21420 0.94642 0.98485 0.99355 1.21674 1.00994 0.91753 0.99160 1.19055 0.93808 0.92319 1.03181 1.22367 0.93916 0.97048 0.91275 1.22996 0.95316 0.96652 1.07286 1.19068 0.82955 0.90186 0.76320 1.90726 1.69568 1.35284 1.53887 1.46197 1.05640 1.10977 1.71757 1.18370 0.90358 0.81441 0.93328 0.98486 1.21902 0.97675 1.02262 0.97412 1.21525 0.98951 0.96675 1.41609 0.90715 1.25844 1.02890 0.94504 0.95463 1.70048 1.37680 1.01094 1.46857 0.85350 0.78218 0.77522 0.78953 1.19532 1.21116 1.18727 1.21463 0.92808 0.99032 0.99765 0.90340 0.89998 0.91213 0.83416 0.83250 0.84395 0.86381 0.82345 0.75781 0.97051 0.93943 0.91341 0.92475 0.85202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 71.24 0.71 -0.55 16 2 C -0.10 -1.64 5.87 -19.91 -0.12 -1.76 16 3 C -0.11 -1.68 9.69 22.35 0.22 -1.47 16 4 C -0.12 -1.91 10.03 22.23 0.22 -1.68 16 5 C -0.12 -2.34 9.41 22.57 0.21 -2.13 16 6 C -0.08 -1.98 5.87 -20.15 -0.12 -2.09 16 7 C -0.03 -0.75 9.46 23.84 0.23 -0.53 16 8 C -0.20 -6.26 9.41 23.62 0.22 -6.04 16 9 C 0.52 22.51 7.71 86.38 0.67 23.18 16 10 O -0.61 -31.87 15.89 -4.34 -0.07 -31.94 16 11 N -0.70 -30.49 5.06 -450.33 -2.28 -32.78 16 12 C 0.27 14.48 2.56 44.24 0.11 14.59 16 13 H 0.00 -0.18 7.58 -2.39 -0.02 -0.19 16 14 C -0.13 -7.03 9.26 71.98 0.67 -6.36 16 15 C -0.55 -29.73 8.73 25.60 0.22 -29.51 16 16 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 17 C 0.01 0.71 5.30 84.65 0.45 1.16 16 18 N -0.92 -53.65 11.32 21.44 0.24 -53.40 16 19 Si 0.98 42.38 29.54 68.60 2.03 44.41 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 21 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 23 C -0.11 -2.35 9.44 22.57 0.21 -2.14 16 24 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 25 H 0.08 0.66 8.08 -2.39 -0.02 0.64 16 26 H 0.07 0.75 8.08 -2.39 -0.02 0.73 16 27 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 28 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 29 H 0.14 2.35 6.17 -2.91 -0.02 2.33 16 30 H 0.12 3.76 7.52 -2.91 -0.02 3.74 16 31 H 0.16 3.68 6.07 -2.91 -0.02 3.66 16 32 H 0.41 14.70 8.52 -92.70 -0.79 13.91 16 33 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 36 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 37 H 0.13 2.48 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -70.64 318.63 4.11 -66.53 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.28 Total: 22.51 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 3.91 Total: -15.33 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -2.04 Total: -86.18 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.07 Total: -31.94 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -70.64 4.11 -66.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194722514.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.542 kcal (2) G-P(sol) polarization free energy of solvation -70.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds