Wall clock time and date at job start Mon Mar 30 2020 00:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37906 * 120.08830 * 2 1 4 4 C 1.38383 * 120.16887 * 180.02562 * 3 2 1 5 5 C 1.38424 * 120.34534 * 359.96602 * 4 3 2 6 6 C 1.37862 * 120.17160 * 359.77594 * 5 4 3 7 7 C 1.39819 * 120.08449 * 180.02562 * 2 1 3 8 8 C 1.47213 * 120.17043 * 359.97438 * 7 2 1 9 9 C 1.34808 * 119.99525 * 135.06943 * 8 7 2 10 10 C 1.46433 * 120.00275 * 349.92095 * 9 8 7 11 11 O 1.21694 * 119.99598 * 353.24054 * 10 9 8 12 12 N 1.34780 * 119.99902 * 172.96941 * 10 9 8 13 13 C 1.46500 * 119.99673 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.47080 * 324.99224 * 13 12 10 15 15 C 1.52997 * 109.47470 * 84.99568 * 13 12 10 16 16 C 1.50703 * 109.46811 * 204.99839 * 13 12 10 17 17 H 1.08005 * 119.99885 * 359.97438 * 16 13 12 18 18 C 1.37872 * 120.00094 * 179.97438 * 16 13 12 19 19 N 1.31517 * 120.00217 * 179.97438 * 18 16 13 20 20 Si 1.86801 * 120.00108 * 0.02562 * 18 16 13 21 21 H 1.48497 * 109.47328 * 89.99254 * 20 18 16 22 22 H 1.48495 * 109.47374 * 210.00073 * 20 18 16 23 23 H 1.48507 * 109.46686 * 329.99749 * 20 18 16 24 24 H 1.08999 * 109.47351 * 269.98035 * 1 2 3 25 25 H 1.08998 * 109.46895 * 29.98687 * 1 2 3 26 26 H 1.09005 * 109.47087 * 149.97823 * 1 2 3 27 27 H 1.07998 * 119.91957 * 0.03607 * 3 2 1 28 28 H 1.08002 * 119.82445 * 180.02562 * 4 3 2 29 29 H 1.08001 * 119.91328 * 180.02562 * 5 4 3 30 30 H 1.08007 * 120.08889 * 180.27446 * 6 5 4 31 31 H 1.07997 * 120.00082 * 315.07979 * 8 7 2 32 32 H 1.07998 * 119.99766 * 169.91623 * 9 8 7 33 33 H 0.96996 * 119.99648 * 359.97438 * 12 10 9 34 34 H 1.09002 * 109.47384 * 299.99982 * 15 13 12 35 35 H 1.09001 * 109.47049 * 60.00021 * 15 13 12 36 36 H 1.08999 * 109.47209 * 179.97438 * 15 13 12 37 37 H 0.96996 * 119.99848 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1932 0.0000 4 6 3.5822 1.1952 -0.0005 5 6 4.2832 0.0016 -0.0004 6 6 3.6064 -1.1995 0.0050 7 6 2.2079 -1.2098 -0.0005 8 6 1.4775 -2.4880 -0.0005 9 6 1.8604 -3.4831 -0.8255 10 6 2.8523 -3.2260 -1.8716 11 8 3.2395 -2.0908 -2.0772 12 7 3.3404 -4.2475 -2.6031 13 6 4.3331 -3.9903 -3.6493 14 1 4.1234 -3.0305 -4.1212 15 6 5.7314 -3.9590 -3.0291 16 6 4.2670 -5.0839 -4.6841 17 1 3.5567 -5.8900 -4.5733 18 6 5.1130 -5.0553 -5.7724 19 7 5.0556 -6.0099 -6.6752 20 14 6.3419 -3.6615 -5.9638 21 1 7.6161 -4.0298 -5.2961 22 1 6.5918 -3.4165 -7.4069 23 1 5.7944 -2.4299 -5.3402 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3633 0.8901 -0.5136 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6585 2.1286 0.0006 28 1 4.1180 2.1329 -0.0001 29 1 5.3632 0.0112 -0.0004 30 1 4.1547 -2.1300 0.0096 31 1 0.6348 -2.6284 0.6602 32 1 1.4358 -4.4698 -0.7147 33 1 3.0349 -5.1528 -2.4362 34 1 5.7793 -3.1680 -2.2806 35 1 5.9412 -4.9189 -2.5572 36 1 6.4700 -3.7681 -3.8076 37 1 5.6511 -5.9899 -7.4406 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255048577.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:15:17 Heat of formation + Delta-G solvation = 11.392724 kcal Electronic energy + Delta-G solvation = -19017.413763 eV Core-core repulsion = 16146.283117 eV Total energy + Delta-G solvation = -2871.130645 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.75656 -38.41507 -35.15160 -33.62627 -32.40097 -32.35826 -30.32209 -29.05534 -26.69791 -25.20842 -24.02543 -21.97435 -21.05693 -20.03720 -19.13753 -17.35722 -16.33123 -15.81094 -15.60676 -15.04403 -14.73646 -14.21200 -13.96933 -13.78357 -13.36171 -13.02123 -12.96841 -12.79382 -12.40238 -12.25506 -12.19103 -11.88506 -11.59951 -11.26705 -10.91093 -10.83235 -10.78447 -10.18386 -9.79675 -9.64279 -9.22106 -9.17647 -8.75236 -8.41941 -8.01605 -7.82810 -6.20461 -4.22731 0.98013 1.71945 2.12704 3.23445 3.35709 3.40765 3.87555 4.06074 4.11154 4.32300 4.86229 4.98513 5.07714 5.14640 5.20855 5.34111 5.40143 5.53658 5.59086 5.72104 5.81554 5.91062 6.16589 6.22459 6.30915 6.35021 6.37172 6.44280 6.57133 6.73132 6.79752 6.85550 6.90564 7.22355 7.27268 7.33383 7.54109 8.18738 8.56330 8.77376 9.00209 9.40898 10.91824 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.028492 B = 0.005409 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.480632 B = 5174.864187 C = 5680.767903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.073 4.073 3 C -0.138 4.138 4 C -0.110 4.110 5 C -0.138 4.138 6 C -0.028 4.028 7 C -0.062 4.062 8 C -0.043 4.043 9 C -0.197 4.197 10 C 0.523 3.477 11 O -0.541 6.541 12 N -0.695 5.695 13 C 0.237 3.763 14 H 0.048 0.952 15 C -0.159 4.159 16 C -0.534 4.534 17 H 0.080 0.920 18 C 0.078 3.922 19 N -0.893 5.893 20 Si 0.885 3.115 21 H -0.276 1.276 22 H -0.294 1.294 23 H -0.262 1.262 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.394 0.606 34 H 0.035 0.965 35 H 0.052 0.948 36 H 0.046 0.954 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.408 9.163 15.578 19.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.073 4.073 3 C -0.157 4.157 4 C -0.128 4.128 5 C -0.156 4.156 6 C -0.046 4.046 7 C -0.062 4.062 8 C -0.063 4.063 9 C -0.218 4.218 10 C 0.310 3.690 11 O -0.421 6.421 12 N -0.342 5.342 13 C 0.133 3.867 14 H 0.066 0.934 15 C -0.217 4.217 16 C -0.572 4.572 17 H 0.098 0.902 18 C -0.125 4.125 19 N -0.530 5.530 20 Si 0.715 3.285 21 H -0.203 1.203 22 H -0.222 1.222 23 H -0.187 1.187 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.228 0.772 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.037 9.864 15.202 19.100 hybrid contribution 0.644 0.013 -0.357 0.737 sum -5.393 9.877 14.844 18.628 Atomic orbital electron populations 1.20775 0.91634 1.02756 1.01788 1.19884 0.95398 0.92409 0.99651 1.20746 0.94202 0.96948 1.03754 1.21079 0.94193 0.97698 0.99829 1.20895 0.99525 0.92522 1.02678 1.21031 0.92834 0.97664 0.93076 1.18688 0.93206 0.92041 1.02286 1.22229 0.96177 0.91657 0.96198 1.23221 1.01195 0.99675 0.97683 1.18452 0.82034 0.85628 0.82861 1.90843 1.60706 1.21399 1.69177 1.46198 1.42701 1.09297 1.36030 1.19075 0.83711 0.98587 0.85334 0.93379 1.22433 0.99423 1.00136 0.99749 1.21059 1.21567 1.09067 1.05555 0.90246 1.24831 0.96836 0.95693 0.95186 1.69870 1.38592 1.32662 1.11901 0.86875 0.81753 0.83560 0.76298 1.20335 1.22172 1.18658 0.91452 0.91727 0.91558 0.86705 0.86792 0.86665 0.86904 0.85252 0.85273 0.77224 0.94605 0.92905 0.93534 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.57 36.00 0.34 -0.84 16 2 C -0.07 -1.01 5.92 -104.15 -0.62 -1.63 16 3 C -0.14 -1.84 9.69 -39.65 -0.38 -2.23 16 4 C -0.11 -1.51 10.04 -39.46 -0.40 -1.90 16 5 C -0.14 -2.09 10.03 -39.65 -0.40 -2.49 16 6 C -0.03 -0.45 6.60 -39.11 -0.26 -0.71 16 7 C -0.06 -0.94 4.50 -105.06 -0.47 -1.41 16 8 C -0.04 -0.55 8.34 -37.15 -0.31 -0.86 16 9 C -0.20 -2.77 9.93 -37.50 -0.37 -3.14 16 10 C 0.52 9.86 6.81 -12.96 -0.09 9.78 16 11 O -0.54 -11.84 11.81 5.19 0.06 -11.78 16 12 N -0.70 -13.87 5.06 -56.33 -0.29 -14.16 16 13 C 0.24 5.68 2.15 -69.08 -0.15 5.54 16 14 H 0.05 1.29 6.64 -51.93 -0.34 0.94 16 15 C -0.16 -3.57 8.96 37.16 0.33 -3.24 16 16 C -0.53 -14.57 9.31 -34.44 -0.32 -14.90 16 17 H 0.08 2.27 7.98 -52.48 -0.42 1.85 16 18 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 19 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 20 Si 0.89 22.04 24.37 -169.99 -4.14 17.90 16 21 H -0.28 -6.65 6.87 56.52 0.39 -6.26 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.26 -6.52 6.53 56.52 0.37 -6.15 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 26 H 0.07 0.70 7.07 -51.93 -0.37 0.33 16 27 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 28 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 29 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 30 H 0.11 1.87 7.12 -52.48 -0.37 1.50 16 31 H 0.13 1.22 7.96 -52.49 -0.42 0.80 16 32 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.39 6.92 8.52 -40.82 -0.35 6.57 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 37 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 304.61 15.07 4.59 4.59 Total: -1.00 -32.13 304.61 -7.19 -39.32 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -5.00 Total: 5.94 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -3.18 Total: -15.93 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.49 Total: -40.04 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.06 Total: -11.78 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.14 Total: 17.90 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.13 -7.19 -39.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255048577.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.711 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds