Wall clock time and date at job start Mon Mar 30 2020 00:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37906 * 120.08830 * 2 1 4 4 C 1.38383 * 120.16887 * 180.02562 * 3 2 1 5 5 C 1.38424 * 120.34534 * 359.96602 * 4 3 2 6 6 C 1.37862 * 120.17160 * 359.77594 * 5 4 3 7 7 C 1.39819 * 120.08449 * 180.02562 * 2 1 3 8 8 C 1.47213 * 120.17043 * 359.97438 * 7 2 1 9 9 C 1.34808 * 119.99525 * 135.06943 * 8 7 2 10 10 C 1.46433 * 120.00275 * 349.92095 * 9 8 7 11 11 O 1.21694 * 119.99598 * 353.24054 * 10 9 8 12 12 N 1.34780 * 119.99902 * 172.96941 * 10 9 8 13 13 C 1.46500 * 119.99673 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.47080 * 324.99224 * 13 12 10 15 15 C 1.52997 * 109.47470 * 84.99568 * 13 12 10 16 16 C 1.50703 * 109.46811 * 204.99839 * 13 12 10 17 17 H 1.08005 * 119.99885 * 359.97438 * 16 13 12 18 18 C 1.37872 * 120.00094 * 179.97438 * 16 13 12 19 19 N 1.31517 * 120.00217 * 179.97438 * 18 16 13 20 20 Si 1.86801 * 120.00108 * 0.02562 * 18 16 13 21 21 H 1.48497 * 109.47328 * 89.99254 * 20 18 16 22 22 H 1.48495 * 109.47374 * 210.00073 * 20 18 16 23 23 H 1.48507 * 109.46686 * 329.99749 * 20 18 16 24 24 H 1.08999 * 109.47351 * 269.98035 * 1 2 3 25 25 H 1.08998 * 109.46895 * 29.98687 * 1 2 3 26 26 H 1.09005 * 109.47087 * 149.97823 * 1 2 3 27 27 H 1.07998 * 119.91957 * 0.03607 * 3 2 1 28 28 H 1.08002 * 119.82445 * 180.02562 * 4 3 2 29 29 H 1.08001 * 119.91328 * 180.02562 * 5 4 3 30 30 H 1.08007 * 120.08889 * 180.27446 * 6 5 4 31 31 H 1.07997 * 120.00082 * 315.07979 * 8 7 2 32 32 H 1.07998 * 119.99766 * 169.91623 * 9 8 7 33 33 H 0.96996 * 119.99648 * 359.97438 * 12 10 9 34 34 H 1.09002 * 109.47384 * 299.99982 * 15 13 12 35 35 H 1.09001 * 109.47049 * 60.00021 * 15 13 12 36 36 H 1.08999 * 109.47209 * 179.97438 * 15 13 12 37 37 H 0.96996 * 119.99848 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1932 0.0000 4 6 3.5822 1.1952 -0.0005 5 6 4.2832 0.0016 -0.0004 6 6 3.6064 -1.1995 0.0050 7 6 2.2079 -1.2098 -0.0005 8 6 1.4775 -2.4880 -0.0005 9 6 1.8604 -3.4831 -0.8255 10 6 2.8523 -3.2260 -1.8716 11 8 3.2395 -2.0908 -2.0772 12 7 3.3404 -4.2475 -2.6031 13 6 4.3331 -3.9903 -3.6493 14 1 4.1234 -3.0305 -4.1212 15 6 5.7314 -3.9590 -3.0291 16 6 4.2670 -5.0839 -4.6841 17 1 3.5567 -5.8900 -4.5733 18 6 5.1130 -5.0553 -5.7724 19 7 5.0556 -6.0099 -6.6752 20 14 6.3419 -3.6615 -5.9638 21 1 7.6161 -4.0298 -5.2961 22 1 6.5918 -3.4165 -7.4069 23 1 5.7944 -2.4299 -5.3402 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3633 0.8901 -0.5136 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6585 2.1286 0.0006 28 1 4.1180 2.1329 -0.0001 29 1 5.3632 0.0112 -0.0004 30 1 4.1547 -2.1300 0.0096 31 1 0.6348 -2.6284 0.6602 32 1 1.4358 -4.4698 -0.7147 33 1 3.0349 -5.1528 -2.4362 34 1 5.7793 -3.1680 -2.2806 35 1 5.9412 -4.9189 -2.5572 36 1 6.4700 -3.7681 -3.8076 37 1 5.6511 -5.9899 -7.4406 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255048577.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:15:17 Heat of formation + Delta-G solvation = -9.264332 kcal Electronic energy + Delta-G solvation = -19018.309520 eV Core-core repulsion = 16146.283117 eV Total energy + Delta-G solvation = -2872.026403 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.05203 -39.69495 -36.89536 -34.78070 -34.38773 -33.39666 -31.98376 -30.30712 -27.64050 -27.24109 -25.32352 -23.35336 -22.18994 -21.64323 -20.56957 -18.90311 -17.98612 -17.44259 -16.94619 -16.22141 -16.14703 -15.71988 -15.32717 -15.10714 -14.83163 -14.51585 -14.25300 -14.10966 -13.95050 -13.59925 -13.43873 -13.17533 -13.06467 -12.81205 -12.70201 -12.16378 -11.94541 -11.84728 -11.62163 -11.29137 -10.91721 -10.87344 -10.56281 -9.83563 -9.35950 -8.97704 -8.40053 -6.45461 -0.12068 0.63417 1.02997 1.24362 1.32754 1.42374 2.23924 2.48958 2.61274 2.96550 3.00142 3.85879 3.99162 4.08247 4.10425 4.23595 4.43702 4.49492 4.52068 4.56901 4.69793 4.70687 4.83212 4.88313 4.96841 5.01773 5.13088 5.24781 5.28318 5.36404 5.42414 5.43253 5.68039 5.68715 5.72879 5.81109 6.15173 6.23363 6.56474 6.95642 7.18812 7.54011 8.75361 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.028492 B = 0.005409 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.480632 B = 5174.864187 C = 5680.767903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.080 4.080 3 C -0.147 4.147 4 C -0.116 4.116 5 C -0.160 4.160 6 C -0.050 4.050 7 C -0.088 4.088 8 C -0.020 4.020 9 C -0.212 4.212 10 C 0.519 3.481 11 O -0.575 6.575 12 N -0.699 5.699 13 C 0.244 3.756 14 H 0.019 0.981 15 C -0.152 4.152 16 C -0.533 4.533 17 H 0.056 0.944 18 C 0.030 3.970 19 N -0.934 5.934 20 Si 0.939 3.061 21 H -0.259 1.259 22 H -0.292 1.292 23 H -0.266 1.266 24 H 0.092 0.908 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.142 0.858 28 H 0.137 0.863 29 H 0.119 0.881 30 H 0.097 0.903 31 H 0.174 0.826 32 H 0.165 0.835 33 H 0.406 0.594 34 H 0.044 0.956 35 H 0.063 0.937 36 H 0.039 0.961 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.551 10.373 17.303 21.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.080 4.080 3 C -0.164 4.164 4 C -0.134 4.134 5 C -0.179 4.179 6 C -0.068 4.068 7 C -0.088 4.088 8 C -0.039 4.039 9 C -0.232 4.232 10 C 0.309 3.691 11 O -0.457 6.457 12 N -0.347 5.347 13 C 0.139 3.861 14 H 0.037 0.963 15 C -0.210 4.210 16 C -0.571 4.571 17 H 0.075 0.925 18 C -0.170 4.170 19 N -0.573 5.573 20 Si 0.766 3.234 21 H -0.185 1.185 22 H -0.219 1.219 23 H -0.191 1.191 24 H 0.110 0.890 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.159 0.841 28 H 0.155 0.845 29 H 0.137 0.863 30 H 0.115 0.885 31 H 0.191 0.809 32 H 0.182 0.818 33 H 0.241 0.759 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.193 11.060 16.957 21.485 hybrid contribution 0.923 -0.289 -0.832 1.276 sum -6.270 10.772 16.125 20.380 Atomic orbital electron populations 1.20843 0.89132 1.03271 1.03523 1.20349 0.97327 0.92014 0.98358 1.21165 0.94257 0.98140 1.02874 1.21410 0.94870 0.98064 0.99084 1.21118 1.00091 0.93095 1.03556 1.21069 0.93819 0.97379 0.94552 1.19041 0.93061 0.93758 1.02905 1.22667 0.95940 0.89951 0.95352 1.23185 1.00856 1.01936 0.97250 1.19220 0.82083 0.84621 0.83167 1.90831 1.61947 1.22683 1.70263 1.46043 1.42584 1.10477 1.35606 1.18679 0.85797 0.95700 0.85904 0.96342 1.22309 0.97951 1.01118 0.99599 1.21288 1.20459 1.08999 1.06356 0.92538 1.25539 0.98697 0.97707 0.95064 1.69974 1.39968 1.34547 1.12766 0.86006 0.80340 0.80657 0.76350 1.18511 1.21885 1.19085 0.88965 0.90777 0.91519 0.84063 0.84550 0.86301 0.88525 0.80901 0.81771 0.75915 0.93694 0.91761 0.94296 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 9.57 71.24 0.68 -1.25 16 2 C -0.08 -2.02 5.92 -19.56 -0.12 -2.14 16 3 C -0.15 -3.58 9.69 22.23 0.22 -3.36 16 4 C -0.12 -3.05 10.04 22.35 0.22 -2.82 16 5 C -0.16 -4.86 10.03 22.22 0.22 -4.64 16 6 C -0.05 -1.61 6.60 22.57 0.15 -1.47 16 7 C -0.09 -2.50 4.50 -20.15 -0.09 -2.60 16 8 C -0.02 -0.45 8.34 23.84 0.20 -0.26 16 9 C -0.21 -5.51 9.93 23.62 0.23 -5.27 16 10 C 0.52 19.33 6.81 86.38 0.59 19.92 16 11 O -0.57 -25.31 11.81 -4.33 -0.05 -25.36 16 12 N -0.70 -27.80 5.06 -450.33 -2.28 -30.08 16 13 C 0.24 11.83 2.15 44.25 0.10 11.92 16 14 H 0.02 1.02 6.64 -2.39 -0.02 1.00 16 15 C -0.15 -6.73 8.96 71.98 0.65 -6.09 16 16 C -0.53 -29.52 9.31 25.60 0.24 -29.28 16 17 H 0.06 3.32 7.98 -2.91 -0.02 3.29 16 18 C 0.03 1.70 5.45 84.65 0.46 2.16 16 19 N -0.93 -56.55 13.96 21.45 0.30 -56.25 16 20 Si 0.94 45.68 24.37 68.60 1.67 47.36 16 21 H -0.26 -11.83 6.87 99.48 0.68 -11.15 16 22 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 23 H -0.27 -13.02 6.53 99.48 0.65 -12.37 16 24 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.07 1.16 8.09 -2.39 -0.02 1.14 16 26 H 0.07 1.16 7.07 -2.38 -0.02 1.15 16 27 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 28 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 29 H 0.12 3.31 8.06 -2.91 -0.02 3.28 16 30 H 0.10 3.31 7.12 -2.91 -0.02 3.29 16 31 H 0.17 2.42 7.96 -2.91 -0.02 2.40 16 32 H 0.16 3.04 8.06 -2.91 -0.02 3.01 16 33 H 0.41 14.09 8.52 -92.71 -0.79 13.30 16 34 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.04 1.77 3.27 -2.39 -0.01 1.76 16 37 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -70.64 304.61 3.59 -67.06 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.20 Total: 22.45 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: 3.75 Total: -25.17 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -1.98 Total: -86.33 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.05 Total: -25.36 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.67 Total: 47.36 kcal Total: -70.64 3.59 -67.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255048577.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.791 kcal (2) G-P(sol) polarization free energy of solvation -70.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds