Wall clock time and date at job start Mon Mar 30 2020 00:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38421 * 119.91680 * 2 1 4 4 C 1.38380 * 120.34288 * 180.02562 * 3 2 1 5 5 C 1.37914 * 120.17330 * 359.95170 * 4 3 2 6 6 C 1.39814 * 119.82430 * 0.02562 * 5 4 3 7 7 C 1.47209 * 120.16739 * 179.97438 * 6 5 4 8 8 C 1.34806 * 120.00404 * 311.98516 * 7 6 5 9 9 C 1.46431 * 119.99905 * 348.73904 * 8 7 6 10 10 O 1.21698 * 120.00051 * 353.30540 * 9 8 7 11 11 N 1.34774 * 120.00126 * 173.29985 * 9 8 7 12 12 C 1.46501 * 119.99998 * 180.02562 * 11 9 8 13 13 H 1.08993 * 109.46948 * 34.99893 * 12 11 9 14 14 C 1.53003 * 109.46770 * 274.99467 * 12 11 9 15 15 C 1.50707 * 109.47051 * 154.99949 * 12 11 9 16 16 H 1.08002 * 119.99775 * 359.97438 * 15 12 11 17 17 C 1.37868 * 120.00059 * 179.97438 * 15 12 11 18 18 N 1.31520 * 119.99719 * 359.97438 * 17 15 12 19 19 Si 1.86794 * 120.00322 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47292 * 59.99746 * 19 17 15 21 21 H 1.48501 * 109.47342 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46958 * 299.99782 * 19 17 15 23 23 C 1.37881 * 119.91024 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.47120 * 270.02533 * 1 2 3 25 25 H 1.09000 * 109.47023 * 30.02001 * 1 2 3 26 26 H 1.08997 * 109.47552 * 150.01985 * 1 2 3 27 27 H 1.07990 * 119.82903 * 0.02562 * 3 2 1 28 28 H 1.08004 * 119.91500 * 180.02562 * 4 3 2 29 29 H 1.07996 * 120.08391 * 180.30303 * 5 4 3 30 30 H 1.07999 * 119.99651 * 131.98917 * 7 6 5 31 31 H 1.07997 * 120.00419 * 168.74110 * 8 7 6 32 32 H 0.97008 * 119.99711 * 359.97438 * 11 9 8 33 33 H 1.09007 * 109.46781 * 60.00619 * 14 12 11 34 34 H 1.09003 * 109.47003 * 179.97438 * 14 12 11 35 35 H 1.08996 * 109.47482 * 300.00395 * 14 12 11 36 36 H 0.97008 * 120.00070 * 180.02562 * 18 17 15 37 37 H 1.07992 * 120.08352 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1998 0.0000 4 6 3.5811 1.2101 -0.0005 5 6 4.2831 0.0230 -0.0001 6 6 3.5930 -1.1930 0.0004 7 6 4.3348 -2.4646 0.0003 8 6 5.3487 -2.6535 -0.8678 9 6 5.5567 -1.7090 -1.9672 10 8 4.7462 -0.8245 -2.1712 11 7 6.6459 -1.8192 -2.7533 12 6 6.8544 -0.8739 -3.8529 13 1 6.4875 0.1099 -3.5607 14 6 6.0937 -1.3552 -5.0902 15 6 8.3253 -0.7880 -4.1695 16 1 9.0340 -1.3782 -3.6075 17 6 8.7662 0.0440 -5.1766 18 7 7.9031 0.7623 -5.8613 19 14 10.5893 0.1500 -5.5695 20 1 11.0887 -1.1907 -5.9673 21 1 10.8006 1.1083 -6.6841 22 1 11.3280 0.6172 -4.3690 23 6 2.1945 -1.1952 0.0005 24 1 -0.3633 0.0005 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6532 2.1326 0.0004 28 1 4.1128 2.1502 -0.0001 29 1 5.3630 0.0327 0.0045 30 1 4.0666 -3.2461 0.6958 31 1 6.0074 -3.5015 -0.7524 32 1 7.2923 -2.5240 -2.5904 33 1 5.0297 -1.4173 -4.8612 34 1 6.2484 -0.6516 -5.9083 35 1 6.4605 -2.3391 -5.3824 36 1 8.2133 1.3474 -6.5701 37 1 1.6544 -2.1303 0.0014 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255640918.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:15:26 Heat of formation + Delta-G solvation = 0.317704 kcal Electronic energy + Delta-G solvation = -18737.525907 eV Core-core repulsion = 15865.915012 eV Total energy + Delta-G solvation = -2871.610894 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.50422 -38.28488 -34.98924 -33.62947 -32.38237 -31.96436 -29.89912 -28.55245 -26.59062 -25.23970 -23.78438 -21.88326 -21.22870 -19.81724 -18.82045 -17.10093 -16.15260 -15.91147 -15.17860 -14.99081 -14.51992 -14.00008 -13.90920 -13.66571 -13.37291 -12.95270 -12.78703 -12.40847 -12.23905 -12.13827 -11.69066 -11.64745 -11.06502 -10.94965 -10.83724 -10.76598 -10.71258 -10.29624 -10.21473 -9.53930 -9.04073 -9.02426 -8.53900 -8.41173 -7.83216 -7.67982 -6.10531 -4.19987 1.12073 1.81042 2.17726 3.26104 3.31358 3.32559 4.04749 4.15271 4.21193 4.44877 4.90536 5.07502 5.16186 5.21450 5.38727 5.40657 5.52125 5.63767 5.65087 5.76311 5.89992 5.94532 6.27581 6.30033 6.44507 6.51018 6.83002 6.85825 6.88343 6.97528 7.00822 7.18842 7.36554 7.51101 7.60937 7.73263 7.95069 8.17716 8.72564 8.81819 9.20950 9.48099 10.95278 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.030849 B = 0.004599 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.421022 B = 6087.450977 C = 6391.696892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.104 4.104 3 C -0.116 4.116 4 C -0.123 4.123 5 C -0.046 4.046 6 C -0.050 4.050 7 C -0.051 4.051 8 C -0.194 4.194 9 C 0.520 3.480 10 O -0.539 6.539 11 N -0.704 5.704 12 C 0.265 3.735 13 H 0.048 0.952 14 C -0.146 4.146 15 C -0.534 4.534 16 H 0.060 0.940 17 C 0.066 3.934 18 N -0.883 5.883 19 Si 0.901 3.099 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 C -0.106 4.106 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.113 0.887 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.387 0.613 33 H 0.014 0.986 34 H 0.089 0.911 35 H 0.025 0.975 36 H 0.264 0.736 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.977 -4.637 12.249 15.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.104 4.104 3 C -0.134 4.134 4 C -0.141 4.141 5 C -0.064 4.064 6 C -0.050 4.050 7 C -0.070 4.070 8 C -0.215 4.215 9 C 0.306 3.694 10 O -0.419 6.419 11 N -0.351 5.351 12 C 0.164 3.836 13 H 0.066 0.934 14 C -0.204 4.204 15 C -0.573 4.573 16 H 0.078 0.922 17 C -0.137 4.137 18 N -0.521 5.521 19 Si 0.729 3.271 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.202 1.202 23 C -0.125 4.125 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.132 0.868 28 H 0.135 0.865 29 H 0.131 0.869 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.220 0.780 33 H 0.033 0.967 34 H 0.108 0.892 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.535 -3.839 11.886 15.714 hybrid contribution 1.475 -0.396 -0.405 1.580 sum -8.059 -4.235 11.481 14.653 Atomic orbital electron populations 1.20716 0.91737 1.02421 1.01610 1.19640 0.95523 0.93210 1.02042 1.20964 0.94246 0.97015 1.01167 1.20920 0.94102 0.97909 1.01189 1.21043 0.99157 0.91462 0.94724 1.18794 0.92981 0.92825 1.00431 1.22248 0.93252 0.94952 0.96591 1.23310 0.99636 1.01550 0.96976 1.18411 0.82697 0.85039 0.83215 1.90853 1.44033 1.34909 1.72139 1.46525 1.22446 1.33576 1.32527 1.18706 0.95076 0.88292 0.81573 0.93385 1.22065 0.96089 1.00352 1.01936 1.21196 0.91425 1.26267 1.18406 0.92190 1.24883 0.98089 0.95071 0.95630 1.69902 1.33774 1.26382 1.22032 0.86517 0.84702 0.77936 0.77985 1.20175 1.21127 1.20191 1.20936 0.92893 0.97188 1.01445 0.91790 0.91900 0.91941 0.86829 0.86484 0.86908 0.85292 0.85528 0.78039 0.96675 0.89247 0.95597 0.92555 0.86687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.01 36.00 0.36 -0.79 16 2 C -0.10 -1.47 5.87 -104.69 -0.61 -2.09 16 3 C -0.12 -1.71 9.69 -39.46 -0.38 -2.09 16 4 C -0.12 -1.99 10.03 -39.65 -0.40 -2.39 16 5 C -0.05 -0.79 6.77 -39.11 -0.26 -1.05 16 6 C -0.05 -0.81 4.34 -105.06 -0.46 -1.26 16 7 C -0.05 -0.70 9.78 -37.16 -0.36 -1.06 16 8 C -0.19 -2.91 9.93 -37.50 -0.37 -3.28 16 9 C 0.52 10.50 6.92 -12.96 -0.09 10.41 16 10 O -0.54 -12.71 12.14 5.19 0.06 -12.64 16 11 N -0.70 -14.89 5.06 -56.32 -0.29 -15.17 16 12 C 0.27 6.85 2.56 -69.08 -0.18 6.67 16 13 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 14 C -0.15 -3.72 9.26 37.16 0.34 -3.38 16 15 C -0.53 -14.31 8.73 -34.44 -0.30 -14.61 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 18 N -0.88 -25.15 11.32 55.43 0.63 -24.52 16 19 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 C -0.11 -1.57 9.44 -39.11 -0.37 -1.94 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 26 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 27 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.12 1.72 8.06 -52.48 -0.42 1.29 16 29 H 0.11 2.02 7.47 -52.49 -0.39 1.62 16 30 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.39 7.09 8.52 -40.82 -0.35 6.74 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 35 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 314.58 15.07 4.74 4.74 Total: -1.00 -31.28 314.58 -8.26 -39.55 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -5.21 Total: 7.46 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -3.18 Total: -15.15 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.34 Total: -39.69 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.06 Total: -12.64 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.28 -8.26 -39.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255640918.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.867 kcal (2) G-P(sol) polarization free energy of solvation -31.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds