Wall clock time and date at job start Mon Mar 30 2020 00:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38421 * 119.91680 * 2 1 4 4 C 1.38380 * 120.34288 * 180.02562 * 3 2 1 5 5 C 1.37914 * 120.17330 * 359.95170 * 4 3 2 6 6 C 1.39814 * 119.82430 * 0.02562 * 5 4 3 7 7 C 1.47209 * 120.16739 * 179.97438 * 6 5 4 8 8 C 1.34806 * 120.00404 * 311.98516 * 7 6 5 9 9 C 1.46431 * 119.99905 * 348.73904 * 8 7 6 10 10 O 1.21698 * 120.00051 * 353.30540 * 9 8 7 11 11 N 1.34774 * 120.00126 * 173.29985 * 9 8 7 12 12 C 1.46501 * 119.99998 * 180.02562 * 11 9 8 13 13 H 1.08993 * 109.46948 * 34.99893 * 12 11 9 14 14 C 1.53003 * 109.46770 * 274.99467 * 12 11 9 15 15 C 1.50707 * 109.47051 * 154.99949 * 12 11 9 16 16 H 1.08002 * 119.99775 * 359.97438 * 15 12 11 17 17 C 1.37868 * 120.00059 * 179.97438 * 15 12 11 18 18 N 1.31520 * 119.99719 * 359.97438 * 17 15 12 19 19 Si 1.86794 * 120.00322 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47292 * 59.99746 * 19 17 15 21 21 H 1.48501 * 109.47342 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46958 * 299.99782 * 19 17 15 23 23 C 1.37881 * 119.91024 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.47120 * 270.02533 * 1 2 3 25 25 H 1.09000 * 109.47023 * 30.02001 * 1 2 3 26 26 H 1.08997 * 109.47552 * 150.01985 * 1 2 3 27 27 H 1.07990 * 119.82903 * 0.02562 * 3 2 1 28 28 H 1.08004 * 119.91500 * 180.02562 * 4 3 2 29 29 H 1.07996 * 120.08391 * 180.30303 * 5 4 3 30 30 H 1.07999 * 119.99651 * 131.98917 * 7 6 5 31 31 H 1.07997 * 120.00419 * 168.74110 * 8 7 6 32 32 H 0.97008 * 119.99711 * 359.97438 * 11 9 8 33 33 H 1.09007 * 109.46781 * 60.00619 * 14 12 11 34 34 H 1.09003 * 109.47003 * 179.97438 * 14 12 11 35 35 H 1.08996 * 109.47482 * 300.00395 * 14 12 11 36 36 H 0.97008 * 120.00070 * 180.02562 * 18 17 15 37 37 H 1.07992 * 120.08352 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1998 0.0000 4 6 3.5811 1.2101 -0.0005 5 6 4.2831 0.0230 -0.0001 6 6 3.5930 -1.1930 0.0004 7 6 4.3348 -2.4646 0.0003 8 6 5.3487 -2.6535 -0.8678 9 6 5.5567 -1.7090 -1.9672 10 8 4.7462 -0.8245 -2.1712 11 7 6.6459 -1.8192 -2.7533 12 6 6.8544 -0.8739 -3.8529 13 1 6.4875 0.1099 -3.5607 14 6 6.0937 -1.3552 -5.0902 15 6 8.3253 -0.7880 -4.1695 16 1 9.0340 -1.3782 -3.6075 17 6 8.7662 0.0440 -5.1766 18 7 7.9031 0.7623 -5.8613 19 14 10.5893 0.1500 -5.5695 20 1 11.0887 -1.1907 -5.9673 21 1 10.8006 1.1083 -6.6841 22 1 11.3280 0.6172 -4.3690 23 6 2.1945 -1.1952 0.0005 24 1 -0.3633 0.0005 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6532 2.1326 0.0004 28 1 4.1128 2.1502 -0.0001 29 1 5.3630 0.0327 0.0045 30 1 4.0666 -3.2461 0.6958 31 1 6.0074 -3.5015 -0.7524 32 1 7.2923 -2.5240 -2.5904 33 1 5.0297 -1.4173 -4.8612 34 1 6.2484 -0.6516 -5.9083 35 1 6.4605 -2.3391 -5.3824 36 1 8.2133 1.3474 -6.5701 37 1 1.6544 -2.1303 0.0014 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255640918.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:15:25 Heat of formation + Delta-G solvation = -18.372084 kcal Electronic energy + Delta-G solvation = -18738.336357 eV Core-core repulsion = 15865.915012 eV Total energy + Delta-G solvation = -2872.421344 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.90107 -39.66817 -36.79788 -34.92809 -34.28337 -33.11789 -31.41353 -30.17290 -27.61244 -27.34996 -25.18450 -23.19600 -22.66945 -21.51261 -20.31774 -18.61615 -17.80597 -17.30862 -16.98267 -16.23134 -16.07734 -15.56827 -15.31577 -14.93761 -14.52973 -14.39417 -14.26241 -13.95907 -13.65291 -13.45970 -13.02509 -13.00045 -12.86384 -12.75644 -12.70957 -12.27351 -12.15406 -11.96453 -11.88470 -11.12323 -10.76510 -10.63484 -10.52038 -9.76442 -9.43228 -8.96552 -8.18000 -6.36026 -0.07342 0.62068 0.98753 1.43591 1.45912 1.53774 2.36557 2.55336 2.79024 2.97274 3.12249 3.83215 4.01691 4.05828 4.16352 4.27227 4.51254 4.57055 4.60527 4.74054 4.80717 4.88579 4.90946 5.01144 5.09210 5.15955 5.19099 5.34511 5.36650 5.46489 5.62300 5.63652 5.70357 5.74865 5.78911 5.95464 6.10283 6.22175 6.72488 7.06705 7.32617 7.65784 8.88011 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.030849 B = 0.004599 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.421022 B = 6087.450977 C = 6391.696892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.109 4.109 3 C -0.127 4.127 4 C -0.145 4.145 5 C -0.073 4.073 6 C -0.070 4.070 7 C -0.027 4.027 8 C -0.207 4.207 9 C 0.512 3.488 10 O -0.580 6.580 11 N -0.704 5.704 12 C 0.274 3.726 13 H -0.005 1.005 14 C -0.131 4.131 15 C -0.549 4.549 16 H 0.073 0.927 17 C 0.014 3.986 18 N -0.918 5.918 19 Si 0.973 3.027 20 H -0.263 1.263 21 H -0.286 1.286 22 H -0.271 1.271 23 C -0.114 4.114 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.135 0.865 28 H 0.117 0.883 29 H 0.092 0.908 30 H 0.180 0.820 31 H 0.168 0.832 32 H 0.403 0.597 33 H 0.008 0.992 34 H 0.065 0.935 35 H 0.039 0.961 36 H 0.265 0.735 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.253 -6.677 13.474 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.109 4.109 3 C -0.145 4.145 4 C -0.163 4.163 5 C -0.091 4.091 6 C -0.070 4.070 7 C -0.047 4.047 8 C -0.228 4.228 9 C 0.302 3.698 10 O -0.463 6.463 11 N -0.352 5.352 12 C 0.170 3.830 13 H 0.013 0.987 14 C -0.190 4.190 15 C -0.587 4.587 16 H 0.091 0.909 17 C -0.186 4.186 18 N -0.557 5.557 19 Si 0.797 3.203 20 H -0.188 1.188 21 H -0.211 1.211 22 H -0.196 1.196 23 C -0.132 4.132 24 H 0.103 0.897 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.153 0.847 28 H 0.135 0.865 29 H 0.110 0.890 30 H 0.197 0.803 31 H 0.185 0.815 32 H 0.238 0.762 33 H 0.028 0.972 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.805 -5.916 13.142 17.431 hybrid contribution 1.436 0.312 -0.726 1.639 sum -8.370 -5.605 12.416 15.988 Atomic orbital electron populations 1.20773 0.88972 1.03257 1.03193 1.20146 0.97635 0.92764 1.00313 1.21279 0.93691 0.98594 1.00937 1.21131 0.95300 0.97881 1.01972 1.21040 0.98367 0.92908 0.96826 1.19169 0.94078 0.93342 1.00451 1.22746 0.91206 0.94630 0.96072 1.23262 1.01634 1.01835 0.96032 1.19303 0.81446 0.85163 0.83884 1.90836 1.45302 1.36858 1.73294 1.46273 1.23655 1.33383 1.31931 1.18251 0.94772 0.87114 0.82861 0.98676 1.21873 0.95719 1.00214 1.01153 1.21540 0.91983 1.26541 1.18614 0.90936 1.25816 1.02822 0.94534 0.95421 1.70062 1.36008 1.27051 1.22541 0.85390 0.78843 0.78356 0.77704 1.18777 1.21136 1.19576 1.21332 0.92506 0.98664 1.00709 0.89699 0.91276 0.90937 0.84749 0.86452 0.89009 0.80318 0.81461 0.76204 0.97240 0.91671 0.94233 0.92588 0.83906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 10.01 71.24 0.71 -1.24 16 2 C -0.11 -2.91 5.87 -19.91 -0.12 -3.02 16 3 C -0.13 -3.73 9.69 22.35 0.22 -3.51 16 4 C -0.14 -4.91 10.03 22.23 0.22 -4.69 16 5 C -0.07 -2.63 6.77 22.57 0.15 -2.48 16 6 C -0.07 -2.19 4.34 -20.15 -0.09 -2.28 16 7 C -0.03 -0.68 9.78 23.84 0.23 -0.44 16 8 C -0.21 -5.79 9.93 23.62 0.23 -5.56 16 9 C 0.51 20.88 6.92 86.38 0.60 21.48 16 10 O -0.58 -28.41 12.14 -4.34 -0.05 -28.46 16 11 N -0.70 -30.06 5.06 -450.32 -2.28 -32.34 16 12 C 0.27 14.62 2.56 44.25 0.11 14.73 16 13 H 0.00 -0.30 7.58 -2.39 -0.02 -0.31 16 14 C -0.13 -6.88 9.26 71.98 0.67 -6.21 16 15 C -0.55 -29.66 8.73 25.60 0.22 -29.44 16 16 H 0.07 3.65 7.74 -2.91 -0.02 3.62 16 17 C 0.01 0.77 5.30 84.65 0.45 1.21 16 18 N -0.92 -53.74 11.32 21.44 0.24 -53.50 16 19 Si 0.97 42.52 29.54 68.60 2.03 44.55 16 20 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 21 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 23 C -0.11 -3.14 9.44 22.58 0.21 -2.93 16 24 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 25 H 0.07 1.20 8.08 -2.39 -0.02 1.18 16 26 H 0.07 1.21 8.08 -2.39 -0.02 1.19 16 27 H 0.13 3.22 8.06 -2.92 -0.02 3.20 16 28 H 0.12 3.74 8.06 -2.91 -0.02 3.72 16 29 H 0.09 3.54 7.47 -2.91 -0.02 3.52 16 30 H 0.18 2.64 8.06 -2.91 -0.02 2.61 16 31 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16 32 H 0.40 14.42 8.52 -92.70 -0.79 13.63 16 33 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 34 H 0.06 3.74 6.07 -2.39 -0.01 3.72 16 35 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.27 14.69 8.31 -92.70 -0.77 13.92 16 37 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -71.08 314.58 4.04 -67.04 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: 0.27 Total: 27.10 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: 3.83 Total: -24.38 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -2.04 Total: -85.84 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.05 Total: -28.46 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -71.08 4.04 -67.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255640918.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.671 kcal (2) G-P(sol) polarization free energy of solvation -71.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds