Wall clock time and date at job start Sun Mar 29 2020 23:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48503 * 109.47086 * 239.99991 * 3 2 1 5 5 H 1.48503 * 109.47155 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46879 * 119.99935 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00342 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.47552 * 179.97438 * 9 7 2 11 11 O 1.21282 * 119.99683 * 0.02562 * 10 9 7 12 12 N 1.34769 * 120.00461 * 179.97438 * 10 9 7 13 13 C 1.46500 * 120.00237 * 180.02562 * 12 10 9 14 14 C 1.50706 * 109.46949 * 180.02562 * 13 12 10 15 15 C 1.38250 * 120.03292 * 90.00207 * 14 13 12 16 16 C 1.38096 * 119.93769 * 179.97438 * 15 14 13 17 17 C 1.38505 * 120.21439 * 0.02562 * 16 15 14 18 18 C 1.38214 * 119.84879 * 359.97438 * 17 16 15 19 19 C 1.38101 * 120.02966 * 269.72287 * 14 13 12 20 20 C 1.51363 * 109.76141 * 180.02562 * 18 17 16 21 21 C 1.54346 * 105.16887 * 342.81608 * 20 18 17 22 22 C 1.51367 * 130.39112 * 180.02562 * 17 16 15 23 23 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47524 * 59.99362 * 9 7 2 25 25 H 1.09004 * 109.47144 * 299.99722 * 9 7 2 26 26 H 0.97010 * 119.99854 * 0.02562 * 12 10 9 27 27 H 1.09000 * 109.46609 * 60.00363 * 13 12 10 28 28 H 1.09000 * 109.47175 * 300.00158 * 13 12 10 29 29 H 1.08008 * 120.03110 * 0.02562 * 15 14 13 30 30 H 1.08003 * 119.89377 * 179.97438 * 16 15 14 31 31 H 1.07997 * 119.89649 * 0.02562 * 19 14 13 32 32 H 1.08997 * 110.30717 * 223.88703 * 20 18 17 33 33 H 1.09003 * 110.38376 * 101.77620 * 20 18 17 34 34 H 1.09000 * 110.82172 * 268.11378 * 21 20 18 35 35 H 1.08996 * 110.99529 * 144.64762 * 21 20 18 36 36 H 1.09000 * 110.30671 * 316.08872 * 22 17 16 37 37 H 1.09000 * 110.30356 * 78.24552 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2303 -3.6447 -0.0027 11 8 3.4227 -3.4230 -0.0021 12 7 1.7811 -4.9153 -0.0033 13 6 2.7330 -6.0288 -0.0038 14 6 1.9795 -7.3339 -0.0051 15 6 1.6340 -7.9323 -1.2025 16 6 0.9439 -9.1285 -1.2014 17 6 0.5958 -9.7312 -0.0040 18 6 0.9412 -9.1330 1.1932 19 6 1.6384 -7.9362 1.1900 20 6 0.4526 -9.9804 2.3484 21 6 -0.6019 -10.9273 1.7370 22 6 -0.1481 -11.0218 0.2647 23 1 -0.4851 0.8400 0.0004 24 1 0.6246 -2.5563 -0.8919 25 1 0.6240 -2.5575 0.8881 26 1 0.8273 -5.0925 -0.0035 27 1 3.3595 -5.9714 0.8863 28 1 3.3598 -5.9707 -0.8937 29 1 1.9043 -7.4650 -2.1381 30 1 0.6740 -9.5951 -2.1373 31 1 1.9121 -7.4703 2.1250 32 1 -0.0022 -9.3511 3.1133 33 1 1.2761 -10.5549 2.7727 34 1 -1.5994 -10.4939 1.8082 35 1 -0.5716 -11.9063 2.2152 36 1 -1.0133 -11.1037 -0.3933 37 1 0.5147 -11.8761 0.1273 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258697370.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:36:04 Heat of formation + Delta-G solvation = -32.996154 kcal Electronic energy + Delta-G solvation = -18042.108993 eV Core-core repulsion = 15169.053501 eV Total energy + Delta-G solvation = -2873.055492 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.31400 -38.58403 -36.34254 -33.73845 -32.88970 -31.55532 -29.93214 -28.68585 -27.65697 -25.32699 -23.22967 -22.52137 -21.01422 -20.26198 -19.59402 -16.51408 -16.33325 -16.05365 -15.82122 -15.30983 -15.03044 -14.67758 -14.33050 -14.09282 -13.35319 -13.14657 -12.99395 -12.82529 -12.55933 -12.29235 -12.03583 -11.81177 -11.44359 -11.27323 -11.12751 -11.08284 -10.84308 -10.76594 -10.55784 -9.93329 -9.25577 -8.96638 -8.76913 -8.46449 -8.37469 -8.36589 -6.02852 -4.02368 1.16898 1.30315 3.39465 3.41261 3.46181 3.52203 3.75704 4.16316 4.22118 4.34195 4.53030 4.72431 4.75299 4.88099 4.93748 5.08255 5.35113 5.36669 5.42086 5.43803 5.51792 5.55283 5.62313 5.73345 5.80959 5.88623 6.00272 6.09574 6.29489 6.41245 6.51216 6.58566 6.89692 7.06438 7.22772 7.36609 7.98751 8.09713 8.47894 9.08261 9.26604 9.62531 11.09569 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.041036 B = 0.003371 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.168481 B = 8304.705820 C = 8480.092955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.054 3.946 3 Si 0.902 3.098 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.074 0.926 9 C 0.006 3.994 10 C 0.514 3.486 11 O -0.547 6.547 12 N -0.745 5.745 13 C 0.161 3.839 14 C -0.096 4.096 15 C -0.101 4.101 16 C -0.110 4.110 17 C -0.098 4.098 18 C -0.101 4.101 19 C -0.089 4.089 20 C -0.082 4.082 21 C -0.121 4.121 22 C -0.082 4.082 23 H 0.262 0.738 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.397 0.603 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.317 -23.521 1.407 23.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.547 4.547 8 H 0.093 0.907 9 C -0.034 4.034 10 C 0.304 3.696 11 O -0.423 6.423 12 N -0.399 5.399 13 C 0.037 3.963 14 C -0.097 4.097 15 C -0.120 4.120 16 C -0.128 4.128 17 C -0.099 4.099 18 C -0.101 4.101 19 C -0.107 4.107 20 C -0.119 4.119 21 C -0.158 4.158 22 C -0.119 4.119 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.230 0.770 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.144 0.856 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.573 -23.209 1.410 23.305 hybrid contribution -0.077 0.782 -0.071 0.789 sum -1.650 -22.427 1.339 22.527 Atomic orbital electron populations 1.69953 1.06040 1.26987 1.51162 1.25011 0.94911 0.99468 0.95245 0.86481 0.79371 0.82279 0.78861 1.20128 1.21374 1.20121 1.21138 0.94239 0.89160 1.50138 0.90738 1.19232 0.94151 0.90504 0.99470 1.22038 0.91101 0.83318 0.73123 1.90533 1.18044 1.84626 1.49109 1.46392 1.09495 1.05487 1.78563 1.20040 0.91352 0.82394 1.02481 1.19885 0.99980 0.96707 0.93114 1.21016 0.97990 0.95121 0.97846 1.20594 0.99458 0.95721 0.96995 1.20601 0.99156 0.96700 0.93394 1.20552 0.98815 0.95179 0.95584 1.20579 0.97912 0.94337 0.97915 1.21037 0.98374 0.96556 0.95965 1.22293 0.98944 0.99656 0.94937 1.21047 0.99192 0.94707 0.96959 0.92871 0.93475 0.93468 0.76978 0.91378 0.91306 0.85568 0.86241 0.85996 0.90627 0.90328 0.90900 0.90641 0.90781 0.90368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 22.42 29.54 -169.99 -5.02 17.40 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.51 -15.01 8.92 -34.44 -0.31 -15.32 16 8 H 0.07 2.29 6.75 -52.49 -0.35 1.93 16 9 C 0.01 0.15 5.46 -29.04 -0.16 -0.01 16 10 C 0.51 11.97 7.82 -10.99 -0.09 11.88 16 11 O -0.55 -14.53 15.46 5.56 0.09 -14.45 16 12 N -0.74 -13.28 5.55 -61.47 -0.34 -13.62 16 13 C 0.16 2.48 5.80 -5.19 -0.03 2.45 16 14 C -0.10 -1.24 5.24 -104.66 -0.55 -1.79 16 15 C -0.10 -1.20 9.70 -39.63 -0.38 -1.58 16 16 C -0.11 -1.17 10.04 -39.53 -0.40 -1.57 16 17 C -0.10 -1.03 6.14 -104.21 -0.64 -1.67 16 18 C -0.10 -1.11 6.14 -104.21 -0.64 -1.75 16 19 C -0.09 -1.08 9.70 -39.53 -0.38 -1.46 16 20 C -0.08 -0.69 6.77 -26.85 -0.18 -0.87 16 21 C -0.12 -0.84 7.08 -25.32 -0.18 -1.02 16 22 C -0.08 -0.64 6.77 -26.85 -0.18 -0.82 16 23 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 24 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 26 H 0.40 6.28 8.46 -40.82 -0.35 5.93 16 27 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 28 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 29 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 30 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 31 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 315.20 15.07 4.75 4.75 Total: -1.00 -33.05 315.20 -9.33 -42.38 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.33 Total: 1.64 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -4.21 Total: -12.05 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.40 Total: -39.67 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.09 Total: -14.45 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.05 -9.33 -42.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258697370.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.387 kcal (2) G-P(sol) polarization free energy of solvation -33.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds