Wall clock time and date at job start Sun Mar 29 2020 23:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48503 * 109.47086 * 239.99991 * 3 2 1 5 5 H 1.48503 * 109.47155 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46879 * 119.99935 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00342 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.47552 * 179.97438 * 9 7 2 11 11 O 1.21282 * 119.99683 * 0.02562 * 10 9 7 12 12 N 1.34769 * 120.00461 * 179.97438 * 10 9 7 13 13 C 1.46500 * 120.00237 * 180.02562 * 12 10 9 14 14 C 1.50706 * 109.46949 * 180.02562 * 13 12 10 15 15 C 1.38250 * 120.03292 * 90.00207 * 14 13 12 16 16 C 1.38096 * 119.93769 * 179.97438 * 15 14 13 17 17 C 1.38505 * 120.21439 * 0.02562 * 16 15 14 18 18 C 1.38214 * 119.84879 * 359.97438 * 17 16 15 19 19 C 1.38101 * 120.02966 * 269.72287 * 14 13 12 20 20 C 1.51363 * 109.76141 * 180.02562 * 18 17 16 21 21 C 1.54346 * 105.16887 * 342.81608 * 20 18 17 22 22 C 1.51367 * 130.39112 * 180.02562 * 17 16 15 23 23 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47524 * 59.99362 * 9 7 2 25 25 H 1.09004 * 109.47144 * 299.99722 * 9 7 2 26 26 H 0.97010 * 119.99854 * 0.02562 * 12 10 9 27 27 H 1.09000 * 109.46609 * 60.00363 * 13 12 10 28 28 H 1.09000 * 109.47175 * 300.00158 * 13 12 10 29 29 H 1.08008 * 120.03110 * 0.02562 * 15 14 13 30 30 H 1.08003 * 119.89377 * 179.97438 * 16 15 14 31 31 H 1.07997 * 119.89649 * 0.02562 * 19 14 13 32 32 H 1.08997 * 110.30717 * 223.88703 * 20 18 17 33 33 H 1.09003 * 110.38376 * 101.77620 * 20 18 17 34 34 H 1.09000 * 110.82172 * 268.11378 * 21 20 18 35 35 H 1.08996 * 110.99529 * 144.64762 * 21 20 18 36 36 H 1.09000 * 110.30671 * 316.08872 * 22 17 16 37 37 H 1.09000 * 110.30356 * 78.24552 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2303 -3.6447 -0.0027 11 8 3.4227 -3.4230 -0.0021 12 7 1.7811 -4.9153 -0.0033 13 6 2.7330 -6.0288 -0.0038 14 6 1.9795 -7.3339 -0.0051 15 6 1.6340 -7.9323 -1.2025 16 6 0.9439 -9.1285 -1.2014 17 6 0.5958 -9.7312 -0.0040 18 6 0.9412 -9.1330 1.1932 19 6 1.6384 -7.9362 1.1900 20 6 0.4526 -9.9804 2.3484 21 6 -0.6019 -10.9273 1.7370 22 6 -0.1481 -11.0218 0.2647 23 1 -0.4851 0.8400 0.0004 24 1 0.6246 -2.5563 -0.8919 25 1 0.6240 -2.5575 0.8881 26 1 0.8273 -5.0925 -0.0035 27 1 3.3595 -5.9714 0.8863 28 1 3.3598 -5.9707 -0.8937 29 1 1.9043 -7.4650 -2.1381 30 1 0.6740 -9.5951 -2.1373 31 1 1.9121 -7.4703 2.1250 32 1 -0.0022 -9.3511 3.1133 33 1 1.2761 -10.5549 2.7727 34 1 -1.5994 -10.4939 1.8082 35 1 -0.5716 -11.9063 2.2152 36 1 -1.0133 -11.1037 -0.3933 37 1 0.5147 -11.8761 0.1273 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258697370.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:36:04 Heat of formation + Delta-G solvation = -52.703615 kcal Electronic energy + Delta-G solvation = -18042.963573 eV Core-core repulsion = 15169.053501 eV Total energy + Delta-G solvation = -2873.910071 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.19921 -40.30705 -37.34057 -35.17172 -35.05623 -32.51162 -31.39600 -30.20079 -28.47937 -26.67880 -25.06828 -23.41147 -21.67303 -21.45199 -21.13103 -18.54355 -17.88900 -17.08518 -16.87925 -16.70857 -16.33377 -16.12468 -15.86991 -15.39781 -14.55763 -14.23931 -14.18621 -14.04179 -13.70395 -13.67555 -13.46301 -13.07553 -12.81147 -12.55941 -12.49769 -12.17104 -12.02871 -12.01156 -11.78872 -11.62275 -11.47676 -10.63820 -10.63400 -10.03748 -9.73672 -9.38639 -8.25605 -6.33406 0.25309 0.43248 1.40010 1.43219 1.51866 1.86415 2.31815 2.47662 2.91846 3.09510 3.42018 3.66079 3.75836 4.07383 4.13086 4.20463 4.29202 4.35688 4.51593 4.54820 4.71899 4.75511 4.82111 4.91554 4.97153 5.06547 5.08751 5.19153 5.24650 5.27732 5.34956 5.46650 5.50779 5.62865 5.67965 5.72879 6.03551 6.05289 6.67911 6.82358 7.32440 7.48129 8.86479 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.041036 B = 0.003371 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.168481 B = 8304.705820 C = 8480.092955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.056 0.944 9 C 0.009 3.991 10 C 0.519 3.481 11 O -0.585 6.585 12 N -0.722 5.722 13 C 0.165 3.835 14 C -0.110 4.110 15 C -0.109 4.109 16 C -0.114 4.114 17 C -0.101 4.101 18 C -0.113 4.113 19 C -0.100 4.100 20 C -0.084 4.084 21 C -0.117 4.117 22 C -0.082 4.082 23 H 0.268 0.732 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.408 0.592 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.131 0.869 30 H 0.142 0.858 31 H 0.121 0.879 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.008 -25.070 1.431 25.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.074 0.926 9 C -0.031 4.031 10 C 0.308 3.692 11 O -0.464 6.464 12 N -0.375 5.375 13 C 0.042 3.958 14 C -0.110 4.110 15 C -0.127 4.127 16 C -0.131 4.131 17 C -0.101 4.101 18 C -0.113 4.113 19 C -0.119 4.119 20 C -0.121 4.121 21 C -0.154 4.154 22 C -0.118 4.118 23 H 0.077 0.923 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.244 0.756 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.149 0.851 30 H 0.160 0.840 31 H 0.139 0.861 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.303 -24.806 1.435 24.954 hybrid contribution 0.084 1.145 -0.074 1.150 sum -2.219 -23.661 1.361 23.804 Atomic orbital electron populations 1.70028 1.07184 1.28213 1.51068 1.25815 0.95873 1.02819 0.94408 0.85490 0.78347 0.78175 0.78956 1.19702 1.19801 1.19694 1.21356 0.93730 0.91264 1.51391 0.92601 1.19074 0.94278 0.90923 0.98818 1.21484 0.89872 0.84511 0.73325 1.90509 1.19141 1.85480 1.51312 1.46110 1.10668 1.04542 1.76206 1.20081 0.91002 0.82649 1.02036 1.19630 1.01378 0.95855 0.94139 1.21144 0.98224 0.95784 0.97564 1.20864 0.98807 0.95218 0.98253 1.21059 0.98397 0.97619 0.93023 1.20910 0.98292 0.94874 0.97175 1.20665 0.98468 0.95171 0.97590 1.21136 0.99165 0.96607 0.95219 1.22326 0.98328 1.00347 0.94398 1.21147 0.99529 0.93520 0.97654 0.92339 0.94017 0.94051 0.75605 0.91924 0.91626 0.85089 0.84035 0.86091 0.90477 0.89329 0.90853 0.88517 0.89638 0.88996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.05 13.29 21.45 0.28 -54.76 16 2 C 0.01 0.55 5.46 84.65 0.46 1.01 16 3 Si 0.97 45.97 29.54 68.60 2.03 48.00 16 4 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 6 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.54 -32.55 8.92 25.60 0.23 -32.32 16 8 H 0.06 3.53 6.75 -2.91 -0.02 3.51 16 9 C 0.01 0.45 5.46 29.10 0.16 0.61 16 10 C 0.52 24.72 7.82 87.66 0.69 25.41 16 11 O -0.58 -31.94 15.46 -3.04 -0.05 -31.99 16 12 N -0.72 -26.02 5.55 -466.78 -2.59 -28.61 16 13 C 0.17 5.14 5.80 85.63 0.50 5.64 16 14 C -0.11 -2.79 5.24 -19.89 -0.10 -2.90 16 15 C -0.11 -2.47 9.70 22.24 0.22 -2.25 16 16 C -0.11 -2.20 10.04 22.30 0.22 -1.98 16 17 C -0.10 -1.88 6.14 -19.59 -0.12 -2.00 16 18 C -0.11 -2.30 6.14 -19.60 -0.12 -2.42 16 19 C -0.10 -2.39 9.70 22.30 0.22 -2.17 16 20 C -0.08 -1.23 6.77 30.52 0.21 -1.02 16 21 C -0.12 -1.27 7.08 31.51 0.22 -1.05 16 22 C -0.08 -1.01 6.77 30.52 0.21 -0.80 16 23 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 24 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.41 12.90 8.46 -92.70 -0.78 12.12 16 27 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 28 H 0.07 2.10 8.09 -2.39 -0.02 2.08 16 29 H 0.13 2.76 8.06 -2.91 -0.02 2.73 16 30 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 31 H 0.12 2.80 8.06 -2.91 -0.02 2.77 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -70.86 315.20 2.94 -67.93 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.28 Total: 15.67 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: 2.98 Total: -16.24 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -2.30 Total: -83.37 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.05 Total: -31.99 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -70.86 2.94 -67.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258697370.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.224 kcal (2) G-P(sol) polarization free energy of solvation -70.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds