Wall clock time and date at job start Sun Mar 29 2020 23:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86799 * 119.99454 * 2 1 4 4 H 1.48502 * 109.47518 * 269.99993 * 3 2 1 5 5 H 1.48496 * 109.47449 * 30.00353 * 3 2 1 6 6 H 1.48501 * 109.47222 * 150.00184 * 3 2 1 7 7 C 1.38951 * 120.00528 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99433 * 359.97438 * 7 2 1 9 9 N 1.37090 * 119.99893 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99989 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99492 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00437 * 180.02562 * 10 9 7 13 13 C 1.53000 * 109.47222 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.68288 * 55.52585 * 13 12 10 15 15 C 1.53323 * 109.71557 * 176.06699 * 13 12 10 16 16 C 1.52733 * 108.38377 * 189.65644 * 15 13 12 17 17 C 1.50626 * 110.59299 * 308.97157 * 16 15 13 18 18 C 1.38915 * 117.74881 * 197.45817 * 17 16 15 19 19 C 1.37717 * 120.59987 * 180.21928 * 18 17 16 20 20 C 1.38263 * 119.75185 * 0.03715 * 19 18 17 21 21 C 1.37932 * 119.77119 * 359.86757 * 20 19 18 22 22 C 1.37587 * 122.55212 * 17.50497 * 17 16 15 23 23 C 1.50631 * 122.62415 * 359.62829 * 22 17 16 24 24 H 0.97002 * 120.00447 * 359.97438 * 1 2 3 25 25 H 0.97001 * 120.00376 * 0.02562 * 9 7 2 26 26 H 1.08998 * 109.47013 * 59.99859 * 12 10 9 27 27 H 1.08998 * 109.46753 * 300.00168 * 12 10 9 28 28 H 1.09004 * 109.68686 * 309.38166 * 15 13 12 29 29 H 1.09000 * 109.68376 * 69.93541 * 15 13 12 30 30 H 1.09003 * 109.24955 * 69.26013 * 16 15 13 31 31 H 1.09009 * 109.24797 * 188.68266 * 16 15 13 32 32 H 1.07999 * 119.72723 * 0.24614 * 18 17 16 33 33 H 1.07995 * 120.12902 * 179.97438 * 19 18 17 34 34 H 1.08000 * 120.11011 * 179.85072 * 20 19 18 35 35 H 1.07997 * 119.72663 * 180.02562 * 21 20 19 36 36 H 1.09002 * 109.25515 * 257.30688 * 23 22 17 37 37 H 1.08998 * 109.25646 * 137.83399 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 2.4954 2.0466 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5455 1.4404 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3798 -1.2031 -0.0011 10 6 4.0539 -2.3703 -0.0011 11 8 3.4474 -3.4207 -0.0011 12 6 5.5609 -2.3702 -0.0011 13 6 6.0710 -3.8127 -0.0017 14 1 5.6457 -4.3521 -0.8481 15 6 7.6010 -3.8202 -0.1007 16 6 8.0610 -5.2565 -0.3419 17 6 7.4460 -6.1869 0.6705 18 6 8.0267 -7.4380 0.8358 19 6 7.5095 -8.3367 1.7421 20 6 6.4018 -7.9920 2.4943 21 6 5.8244 -6.7497 2.3337 22 6 6.3464 -5.8412 1.4217 23 6 5.6695 -4.5009 1.3013 24 1 -0.4851 0.8400 0.0004 25 1 3.8648 -0.3631 -0.0007 26 1 5.9242 -1.8564 0.8889 27 1 5.9242 -1.8563 -0.8910 28 1 7.9184 -3.1888 -0.9306 29 1 8.0309 -3.4484 0.8293 30 1 7.7617 -5.5664 -1.3432 31 1 9.1470 -5.3044 -0.2611 32 1 8.8919 -7.7086 0.2487 33 1 7.9667 -9.3075 1.8641 34 1 5.9900 -8.6933 3.2050 35 1 4.9595 -6.4811 2.9220 36 1 5.9614 -3.8739 2.1438 37 1 4.5887 -4.6415 1.3154 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264957345.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:12 Heat of formation + Delta-G solvation = -34.844666 kcal Electronic energy + Delta-G solvation = -18744.321968 eV Core-core repulsion = 15871.186319 eV Total energy + Delta-G solvation = -2873.135649 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.04055 -38.44622 -36.14181 -33.97768 -32.51251 -31.71515 -31.12726 -29.07879 -27.12652 -24.51456 -23.30590 -22.01815 -21.59359 -19.32699 -19.07843 -18.16140 -16.39952 -15.72166 -15.58728 -15.14240 -14.81785 -14.28328 -14.16447 -13.72736 -13.53397 -13.13193 -13.00716 -12.73663 -12.57935 -12.19770 -11.92174 -11.72500 -11.45562 -11.30496 -11.18927 -10.98812 -10.59929 -10.46483 -10.29378 -10.08250 -9.95783 -9.54101 -8.65632 -8.49065 -8.32831 -8.15525 -6.30476 -3.81577 1.46546 1.50569 3.03448 3.07528 3.15656 3.77317 3.86020 4.10918 4.56534 4.74376 4.82377 5.05396 5.08797 5.12712 5.22870 5.26386 5.35704 5.45930 5.53839 5.66565 5.72281 5.83520 5.92810 5.99978 6.00913 6.03457 6.10161 6.14369 6.24407 6.31844 6.58319 6.60951 6.68157 6.73200 6.90782 7.15845 7.58399 8.16799 8.60626 8.96236 9.44492 9.85317 10.82751 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.037944 B = 0.004336 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.756705 B = 6456.475156 C = 6963.961504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.119 0.881 9 N -0.591 5.591 10 C 0.449 3.551 11 O -0.575 6.575 12 C -0.131 4.131 13 C -0.064 4.064 14 H 0.080 0.920 15 C -0.117 4.117 16 C -0.078 4.078 17 C -0.082 4.082 18 C -0.124 4.124 19 C -0.132 4.132 20 C -0.125 4.125 21 C -0.120 4.120 22 C -0.059 4.059 23 C -0.085 4.085 24 H 0.273 0.727 25 H 0.371 0.629 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.068 0.932 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.903 -8.350 2.104 19.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.435 4.435 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.236 3.764 11 O -0.458 6.458 12 C -0.171 4.171 13 C -0.083 4.083 14 H 0.099 0.901 15 C -0.154 4.154 16 C -0.115 4.115 17 C -0.082 4.082 18 C -0.142 4.142 19 C -0.150 4.150 20 C -0.143 4.143 21 C -0.138 4.138 22 C -0.059 4.059 23 C -0.121 4.121 24 H 0.084 0.916 25 H 0.203 0.797 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.086 0.914 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 17.277 -8.928 2.104 19.561 hybrid contribution 0.510 1.355 0.066 1.449 sum 17.786 -7.573 2.170 19.453 Atomic orbital electron populations 1.69622 1.05663 1.27472 1.49477 1.25046 0.95486 0.97988 0.97669 0.86677 0.79809 0.84062 0.78889 1.19641 1.20212 1.19454 1.19454 0.79445 0.96586 1.47975 0.86314 1.42281 1.07514 1.06358 1.66810 1.19898 0.88683 0.84328 0.83483 1.90517 1.69968 1.30876 1.54463 1.21628 0.94790 0.97856 1.02846 1.20793 0.93683 0.94790 0.98997 0.90130 1.21656 0.96093 0.95770 1.01899 1.20444 0.99435 0.94021 0.97571 1.19630 0.95698 0.95005 0.97839 1.21045 1.00274 0.93756 0.99103 1.20923 0.97270 0.99336 0.97470 1.21036 0.96613 0.96681 0.99986 1.21252 1.00086 0.93771 0.98698 1.19819 0.94404 0.96598 0.95077 1.20730 1.02521 0.91676 0.97192 0.91647 0.79662 0.90388 0.90241 0.91460 0.91787 0.90726 0.91166 0.86639 0.86578 0.86441 0.86096 0.91362 0.87796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.84 13.96 55.50 0.77 -25.07 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.40 27.74 -169.99 -4.71 14.69 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.41 6.52 56.52 0.37 -5.05 16 7 C -0.31 -8.64 10.16 -14.94 -0.15 -8.80 16 8 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 9 N -0.59 -14.03 5.09 -10.96 -0.06 -14.09 16 10 C 0.45 9.98 7.54 -10.98 -0.08 9.90 16 11 O -0.57 -14.87 13.59 5.55 0.08 -14.80 16 12 C -0.13 -2.09 5.18 -27.88 -0.14 -2.23 16 13 C -0.06 -0.96 1.85 -90.59 -0.17 -1.13 16 14 H 0.08 1.37 7.94 -51.93 -0.41 0.96 16 15 C -0.12 -1.36 5.29 -26.70 -0.14 -1.50 16 16 C -0.08 -0.87 5.67 -28.06 -0.16 -1.03 16 17 C -0.08 -1.08 5.73 -104.64 -0.60 -1.68 16 18 C -0.12 -1.46 9.60 -39.52 -0.38 -1.84 16 19 C -0.13 -1.51 10.04 -39.76 -0.40 -1.91 16 20 C -0.13 -1.52 10.05 -39.68 -0.40 -1.92 16 21 C -0.12 -1.67 9.61 -39.44 -0.38 -2.05 16 22 C -0.06 -0.87 5.73 -104.64 -0.60 -1.47 16 23 C -0.08 -1.34 4.62 -28.05 -0.13 -1.47 16 24 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.37 7.75 5.76 -40.82 -0.24 7.52 16 26 H 0.08 1.10 8.12 -51.93 -0.42 0.68 16 27 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 29 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.65 8.13 -51.92 -0.42 0.23 16 32 H 0.12 1.09 8.05 -52.49 -0.42 0.67 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.12 1.60 8.05 -52.49 -0.42 1.18 16 36 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 37 H 0.10 1.99 6.14 -51.93 -0.32 1.67 16 LS Contribution 302.28 15.07 4.56 4.56 Total: -1.00 -31.71 302.28 -8.36 -40.07 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -5.16 Total: 10.72 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -3.83 Total: -16.09 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.72 Total: -39.16 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.08 Total: -14.80 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.71 Total: 14.69 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.71 -8.36 -40.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264957345.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.228 kcal (2) G-P(sol) polarization free energy of solvation -31.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds