Wall clock time and date at job start Sun Mar 29 2020 23:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86799 * 119.99454 * 2 1 4 4 H 1.48502 * 109.47518 * 269.99993 * 3 2 1 5 5 H 1.48496 * 109.47449 * 30.00353 * 3 2 1 6 6 H 1.48501 * 109.47222 * 150.00184 * 3 2 1 7 7 C 1.38951 * 120.00528 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99433 * 359.97438 * 7 2 1 9 9 N 1.37090 * 119.99893 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99989 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99492 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00437 * 180.02562 * 10 9 7 13 13 C 1.53000 * 109.47222 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.68288 * 55.52585 * 13 12 10 15 15 C 1.53323 * 109.71557 * 176.06699 * 13 12 10 16 16 C 1.52733 * 108.38377 * 189.65644 * 15 13 12 17 17 C 1.50626 * 110.59299 * 308.97157 * 16 15 13 18 18 C 1.38915 * 117.74881 * 197.45817 * 17 16 15 19 19 C 1.37717 * 120.59987 * 180.21928 * 18 17 16 20 20 C 1.38263 * 119.75185 * 0.03715 * 19 18 17 21 21 C 1.37932 * 119.77119 * 359.86757 * 20 19 18 22 22 C 1.37587 * 122.55212 * 17.50497 * 17 16 15 23 23 C 1.50631 * 122.62415 * 359.62829 * 22 17 16 24 24 H 0.97002 * 120.00447 * 359.97438 * 1 2 3 25 25 H 0.97001 * 120.00376 * 0.02562 * 9 7 2 26 26 H 1.08998 * 109.47013 * 59.99859 * 12 10 9 27 27 H 1.08998 * 109.46753 * 300.00168 * 12 10 9 28 28 H 1.09004 * 109.68686 * 309.38166 * 15 13 12 29 29 H 1.09000 * 109.68376 * 69.93541 * 15 13 12 30 30 H 1.09003 * 109.24955 * 69.26013 * 16 15 13 31 31 H 1.09009 * 109.24797 * 188.68266 * 16 15 13 32 32 H 1.07999 * 119.72723 * 0.24614 * 18 17 16 33 33 H 1.07995 * 120.12902 * 179.97438 * 19 18 17 34 34 H 1.08000 * 120.11011 * 179.85072 * 20 19 18 35 35 H 1.07997 * 119.72663 * 180.02562 * 21 20 19 36 36 H 1.09002 * 109.25515 * 257.30688 * 23 22 17 37 37 H 1.08998 * 109.25646 * 137.83399 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 2.4954 2.0466 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5455 1.4404 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3798 -1.2031 -0.0011 10 6 4.0539 -2.3703 -0.0011 11 8 3.4474 -3.4207 -0.0011 12 6 5.5609 -2.3702 -0.0011 13 6 6.0710 -3.8127 -0.0017 14 1 5.6457 -4.3521 -0.8481 15 6 7.6010 -3.8202 -0.1007 16 6 8.0610 -5.2565 -0.3419 17 6 7.4460 -6.1869 0.6705 18 6 8.0267 -7.4380 0.8358 19 6 7.5095 -8.3367 1.7421 20 6 6.4018 -7.9920 2.4943 21 6 5.8244 -6.7497 2.3337 22 6 6.3464 -5.8412 1.4217 23 6 5.6695 -4.5009 1.3013 24 1 -0.4851 0.8400 0.0004 25 1 3.8648 -0.3631 -0.0007 26 1 5.9242 -1.8564 0.8889 27 1 5.9242 -1.8563 -0.8910 28 1 7.9184 -3.1888 -0.9306 29 1 8.0309 -3.4484 0.8293 30 1 7.7617 -5.5664 -1.3432 31 1 9.1470 -5.3044 -0.2611 32 1 8.8919 -7.7086 0.2487 33 1 7.9667 -9.3075 1.8641 34 1 5.9900 -8.6933 3.2050 35 1 4.9595 -6.4811 2.9220 36 1 5.9614 -3.8739 2.1438 37 1 4.5887 -4.6415 1.3154 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264957345.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:11 Heat of formation + Delta-G solvation = -54.472627 kcal Electronic energy + Delta-G solvation = -18745.173100 eV Core-core repulsion = 15871.186319 eV Total energy + Delta-G solvation = -2873.986781 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.15545 -40.10227 -37.31937 -35.93672 -33.76511 -33.55130 -32.29655 -30.08118 -28.52444 -26.31282 -24.34935 -23.00973 -22.77587 -21.18376 -20.26707 -19.97901 -17.68539 -17.19301 -16.84913 -16.62185 -16.05546 -15.66835 -15.46614 -15.11165 -14.86800 -14.56874 -14.22805 -14.14765 -13.84718 -13.74880 -13.17158 -12.97963 -12.75697 -12.53892 -12.39963 -12.26546 -12.06868 -11.97957 -11.63172 -11.49572 -11.35734 -11.10696 -10.29491 -10.22495 -9.61650 -9.37783 -8.41380 -6.01895 0.50291 0.51976 1.30104 1.35543 1.44424 1.99423 2.23134 2.88779 2.97684 3.15940 3.70929 3.81001 3.99653 4.11860 4.17598 4.21732 4.26318 4.38149 4.55629 4.57511 4.64408 4.73365 4.79812 4.88941 4.92452 5.05339 5.13210 5.17094 5.18152 5.29340 5.46256 5.55085 5.57815 5.64683 5.67569 5.85944 5.97204 6.19969 6.59461 6.89473 7.41739 7.99861 8.76585 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.037944 B = 0.004336 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.756705 B = 6456.475156 C = 6963.961504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.017 4.017 3 Si 0.965 3.035 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.231 1.231 7 C -0.330 4.330 8 H 0.053 0.947 9 N -0.594 5.594 10 C 0.447 3.553 11 O -0.620 6.620 12 C -0.119 4.119 13 C -0.063 4.063 14 H 0.052 0.948 15 C -0.107 4.107 16 C -0.078 4.078 17 C -0.091 4.091 18 C -0.126 4.126 19 C -0.131 4.131 20 C -0.132 4.132 21 C -0.145 4.145 22 C -0.086 4.086 23 C -0.080 4.080 24 H 0.279 0.721 25 H 0.390 0.610 26 H 0.108 0.892 27 H 0.115 0.885 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.137 0.863 35 H 0.110 0.890 36 H 0.072 0.928 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.465 -7.216 1.729 23.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.215 4.215 3 Si 0.785 3.215 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.154 1.154 7 C -0.459 4.459 8 H 0.071 0.929 9 N -0.235 5.235 10 C 0.236 3.764 11 O -0.505 6.505 12 C -0.159 4.159 13 C -0.082 4.082 14 H 0.071 0.929 15 C -0.144 4.144 16 C -0.115 4.115 17 C -0.091 4.091 18 C -0.144 4.144 19 C -0.149 4.149 20 C -0.150 4.150 21 C -0.164 4.164 22 C -0.086 4.086 23 C -0.117 4.117 24 H 0.088 0.912 25 H 0.225 0.775 26 H 0.127 0.873 27 H 0.133 0.867 28 H 0.111 0.889 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.163 0.837 33 H 0.164 0.836 34 H 0.154 0.846 35 H 0.128 0.872 36 H 0.091 0.909 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 21.866 -7.810 1.731 23.284 hybrid contribution -0.984 0.787 0.203 1.276 sum 20.882 -7.024 1.934 22.116 Atomic orbital electron populations 1.69810 1.08197 1.29215 1.50536 1.26137 0.96471 1.02781 0.96106 0.85356 0.79493 0.76643 0.79981 1.18071 1.20073 1.15399 1.19028 0.81775 0.94833 1.50247 0.92873 1.42130 1.05725 1.07819 1.67839 1.21246 0.91548 0.83065 0.80564 1.90518 1.71880 1.32678 1.55454 1.21691 0.88994 0.99326 1.05899 1.20780 0.96634 0.93622 0.97125 0.92921 1.21613 0.92453 0.96825 1.03520 1.20527 1.00960 0.93099 0.96875 1.19953 0.95158 0.96271 0.97760 1.21429 1.00860 0.93021 0.99065 1.21339 0.96508 1.00534 0.96479 1.21312 0.96977 0.96126 1.00546 1.21372 1.00502 0.95091 0.99391 1.19842 0.95852 0.96228 0.96699 1.20567 0.99698 0.93220 0.98202 0.91195 0.77468 0.87348 0.86678 0.88932 0.90689 0.90496 0.88254 0.83671 0.83570 0.84562 0.87222 0.90927 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.25 13.96 21.66 0.30 -56.95 16 2 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 3 Si 0.97 39.17 27.74 68.60 1.90 41.07 16 4 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 5 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.23 -7.87 6.52 99.48 0.65 -7.22 16 7 C -0.33 -19.60 10.16 84.04 0.85 -18.74 16 8 H 0.05 3.77 7.39 -2.91 -0.02 3.75 16 9 N -0.59 -28.34 5.09 -306.98 -1.56 -29.90 16 10 C 0.45 20.21 7.54 87.66 0.66 20.87 16 11 O -0.62 -34.32 13.59 -3.07 -0.04 -34.36 16 12 C -0.12 -3.54 5.18 29.85 0.15 -3.39 16 13 C -0.06 -1.83 1.85 -10.77 -0.02 -1.85 16 14 H 0.05 1.82 7.94 -2.39 -0.02 1.80 16 15 C -0.11 -2.10 5.29 30.61 0.16 -1.94 16 16 C -0.08 -1.48 5.67 29.74 0.17 -1.31 16 17 C -0.09 -2.24 5.73 -19.88 -0.11 -2.36 16 18 C -0.13 -2.60 9.60 22.31 0.21 -2.38 16 19 C -0.13 -2.66 10.04 22.15 0.22 -2.44 16 20 C -0.13 -3.11 10.05 22.20 0.22 -2.89 16 21 C -0.15 -4.23 9.61 22.36 0.21 -4.02 16 22 C -0.09 -2.58 5.73 -19.88 -0.11 -2.69 16 23 C -0.08 -2.63 4.62 29.74 0.14 -2.49 16 24 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 25 H 0.39 15.35 5.76 -92.71 -0.53 14.82 16 26 H 0.11 2.65 8.12 -2.39 -0.02 2.63 16 27 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 28 H 0.09 1.40 8.13 -2.38 -0.02 1.38 16 29 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 30 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.10 1.35 8.13 -2.38 -0.02 1.33 16 32 H 0.15 2.09 8.05 -2.91 -0.02 2.07 16 33 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 34 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 35 H 0.11 3.24 8.05 -2.91 -0.02 3.22 16 36 H 0.07 2.21 8.10 -2.39 -0.02 2.19 16 37 H 0.06 2.34 6.14 -2.39 -0.01 2.32 16 Total: -1.00 -77.01 302.28 4.30 -72.71 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: 0.47 Total: 33.53 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: 3.23 Total: -26.09 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -1.26 Total: -86.85 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.04 Total: -34.36 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 1.90 Total: 41.07 kcal Total: -77.01 4.30 -72.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264957345.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.234 kcal (2) G-P(sol) polarization free energy of solvation -77.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds