Wall clock time and date at job start Mon Mar 30 2020 00:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38256 * 120.00037 * 2 1 4 4 C 1.38216 * 119.99667 * 179.97438 * 3 2 1 5 5 C 1.38257 * 120.00082 * 359.96258 * 4 3 2 6 6 C 1.38206 * 119.99987 * 359.84648 * 5 4 3 7 7 C 1.38206 * 119.99640 * 180.02562 * 2 1 3 8 8 C 1.50708 * 120.00250 * 359.97438 * 7 2 1 9 9 H 1.08992 * 110.88420 * 356.12271 * 8 7 2 10 10 C 1.55160 * 111.00089 * 120.00007 * 8 7 2 11 11 C 1.54318 * 102.94100 * 153.57942 * 10 8 7 12 12 N 1.47026 * 107.27321 * 337.80522 * 11 10 8 13 13 C 1.34771 * 125.65100 * 178.67463 * 12 11 10 14 14 O 1.21690 * 120.00184 * 180.02562 * 13 12 11 15 15 C 1.46375 * 120.00032 * 0.02732 * 13 12 11 16 16 H 1.08001 * 119.99892 * 359.97438 * 15 13 12 17 17 C 1.40051 * 119.99943 * 179.97438 * 15 13 12 18 18 N 1.30664 * 119.99909 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 119.99877 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47280 * 89.99698 * 19 17 15 21 21 H 1.48497 * 109.47096 * 210.00368 * 19 17 15 22 22 H 1.48503 * 109.46874 * 330.00146 * 19 17 15 23 23 C 1.47425 * 108.70074 * 358.94056 * 12 11 10 24 24 H 1.09004 * 109.47324 * 269.98229 * 1 2 3 25 25 H 1.09002 * 109.46833 * 29.97886 * 1 2 3 26 26 H 1.08997 * 109.46971 * 149.97867 * 1 2 3 27 27 H 1.07999 * 119.99945 * 359.97438 * 3 2 1 28 28 H 1.07998 * 119.99914 * 179.97438 * 4 3 2 29 29 H 1.07996 * 119.99754 * 180.02562 * 5 4 3 30 30 H 1.08006 * 120.00186 * 180.20798 * 6 5 4 31 31 H 1.09003 * 110.71997 * 35.21334 * 10 8 7 32 32 H 1.08998 * 110.71579 * 271.94243 * 10 8 7 33 33 H 1.09005 * 109.88370 * 218.39142 * 11 10 8 34 34 H 1.08997 * 110.01391 * 97.29521 * 11 10 8 35 35 H 0.97010 * 119.99732 * 179.97438 * 18 17 15 36 36 H 1.08996 * 110.37004 * 142.96468 * 23 12 11 37 37 H 1.09002 * 110.37038 * 265.28812 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0001 0.0019 6 6 3.5806 -1.1970 0.0058 7 6 2.1980 -1.1969 -0.0005 8 6 1.4445 -2.5021 -0.0005 9 1 0.3704 -2.3306 0.0688 10 6 1.7932 -3.3455 -1.2553 11 6 1.5353 -4.7916 -0.7823 12 7 1.6157 -4.7916 0.6857 13 6 1.4236 -5.8612 1.4829 14 8 1.5151 -5.7441 2.6907 15 6 1.1050 -7.1637 0.8960 16 1 1.0234 -7.2675 -0.1759 17 6 0.9059 -8.2752 1.7244 18 7 1.0041 -8.1494 3.0212 19 14 0.4985 -9.9373 0.9753 20 1 1.7558 -10.6784 0.7014 21 1 -0.3385 -10.7157 1.9233 22 1 -0.2457 -9.7390 -0.2943 23 6 1.9349 -3.4265 1.1417 24 1 -0.3634 -0.0003 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6584 2.1326 -0.0004 28 1 4.1206 2.1325 0.0001 29 1 5.3517 -0.0001 0.0027 30 1 4.1206 -2.1324 0.0103 31 1 2.8388 -3.2109 -1.5321 32 1 1.1369 -3.0889 -2.0869 33 1 2.2933 -5.4574 -1.1951 34 1 0.5443 -5.1166 -1.0992 35 1 0.8659 -8.9193 3.5950 36 1 1.4037 -3.2013 2.0664 37 1 3.0099 -3.3157 1.2842 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274645277.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:19:15 Heat of formation + Delta-G solvation = -41.050767 kcal Electronic energy + Delta-G solvation = -18912.743177 eV Core-core repulsion = 16039.338411 eV Total energy + Delta-G solvation = -2873.404766 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.05207 -39.60259 -37.59048 -34.69058 -34.02065 -33.14204 -30.75564 -29.71209 -28.18351 -27.47018 -24.78275 -23.42643 -22.15742 -21.20239 -20.76633 -18.61488 -17.78058 -17.63920 -16.63930 -16.17006 -16.02408 -15.63710 -15.27323 -14.75821 -14.50279 -14.30245 -14.03605 -13.87172 -13.74181 -13.31915 -13.11309 -13.04595 -12.97438 -12.72233 -12.64140 -12.30881 -12.18252 -12.03924 -11.99426 -11.59270 -11.35304 -10.95975 -9.93891 -9.63811 -9.42082 -9.11980 -8.32623 -6.88888 0.46175 0.52223 1.38375 1.40344 1.56028 2.22082 2.41545 2.81865 2.84971 3.53039 3.68849 3.81727 3.83261 4.06868 4.10067 4.22402 4.29661 4.38119 4.46601 4.51827 4.70261 4.78954 4.81788 4.85533 4.93421 4.97807 4.98816 5.12904 5.21161 5.28697 5.29667 5.35771 5.60638 5.64549 5.66818 5.81967 6.00483 6.17616 6.37648 6.83116 7.44370 8.41499 8.63696 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.040411 B = 0.004377 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.707073 B = 6396.027855 C = 6452.309775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.092 4.092 3 C -0.125 4.125 4 C -0.123 4.123 5 C -0.132 4.132 6 C -0.125 4.125 7 C -0.080 4.080 8 C -0.055 4.055 9 H 0.096 0.904 10 C -0.106 4.106 11 C 0.113 3.887 12 N -0.654 5.654 13 C 0.549 3.451 14 O -0.635 6.635 15 C -0.564 4.564 16 H 0.088 0.912 17 C 0.027 3.973 18 N -0.823 5.823 19 Si 1.001 2.999 20 H -0.260 1.260 21 H -0.271 1.271 22 H -0.247 1.247 23 C 0.123 3.877 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.144 0.856 28 H 0.146 0.854 29 H 0.137 0.863 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.275 0.725 36 H 0.032 0.968 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.562 15.906 -12.019 19.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.092 4.092 3 C -0.142 4.142 4 C -0.141 4.141 5 C -0.149 4.149 6 C -0.143 4.143 7 C -0.081 4.081 8 C -0.073 4.073 9 H 0.114 0.886 10 C -0.144 4.144 11 C -0.010 4.010 12 N -0.391 5.391 13 C 0.356 3.644 14 O -0.523 6.523 15 C -0.600 4.600 16 H 0.106 0.894 17 C -0.188 4.188 18 N -0.452 5.452 19 Si 0.819 3.181 20 H -0.185 1.185 21 H -0.196 1.196 22 H -0.170 1.170 23 C -0.001 4.001 24 H 0.086 0.914 25 H 0.105 0.895 26 H 0.088 0.912 27 H 0.162 0.838 28 H 0.164 0.836 29 H 0.155 0.845 30 H 0.132 0.868 31 H 0.100 0.900 32 H 0.124 0.876 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.051 0.949 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.590 15.831 -11.154 19.431 hybrid contribution 0.039 -0.944 0.404 1.027 sum 1.629 14.887 -10.750 18.435 Atomic orbital electron populations 1.20907 0.90331 1.03684 1.02650 1.20030 0.97004 0.92517 0.99621 1.21311 0.94659 0.97710 1.00568 1.21452 0.94480 0.98659 0.99519 1.21359 1.00810 0.92227 1.00541 1.21130 0.93825 0.98794 1.00546 1.19498 0.93742 0.93483 1.01370 1.21295 1.00163 0.91141 0.94741 0.88597 1.22710 1.03232 0.91440 0.96979 1.21858 1.00793 0.97872 0.80453 1.48550 1.75368 1.07998 1.07214 1.18483 0.76730 0.84161 0.85033 1.90548 1.59200 1.85706 1.16804 1.21396 1.51237 0.92293 0.95064 0.89382 1.27056 0.91887 1.05198 0.94661 1.70203 1.36421 1.32511 1.06088 0.84984 0.79189 0.74879 0.79032 1.18480 1.19616 1.17006 1.21962 0.98248 0.83018 0.96873 0.91403 0.89528 0.91245 0.83822 0.83638 0.84495 0.86768 0.89954 0.87628 0.92737 0.92498 0.91475 0.94921 0.93710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 9.36 71.24 0.67 -1.63 16 2 C -0.09 -2.11 5.88 -19.87 -0.12 -2.23 16 3 C -0.12 -2.41 9.70 22.27 0.22 -2.20 16 4 C -0.12 -2.30 10.05 22.27 0.22 -2.08 16 5 C -0.13 -2.81 10.05 22.27 0.22 -2.59 16 6 C -0.12 -3.25 8.31 22.27 0.19 -3.06 16 7 C -0.08 -2.16 5.00 -19.86 -0.10 -2.26 16 8 C -0.05 -1.66 2.98 -10.14 -0.03 -1.69 16 9 H 0.10 2.84 5.68 -2.39 -0.01 2.82 16 10 C -0.11 -2.90 6.37 31.78 0.20 -2.70 16 11 C 0.11 4.19 6.05 86.73 0.52 4.72 16 12 N -0.65 -31.91 3.33 -816.87 -2.72 -34.63 16 13 C 0.55 33.83 7.78 86.36 0.67 34.50 16 14 O -0.63 -45.09 15.27 -4.32 -0.07 -45.16 16 15 C -0.56 -33.05 9.06 24.83 0.23 -32.82 16 16 H 0.09 4.64 7.16 -2.91 -0.02 4.62 16 17 C 0.03 1.54 5.50 85.31 0.47 2.01 16 18 N -0.82 -51.72 11.83 21.84 0.26 -51.46 16 19 Si 1.00 41.55 29.56 68.60 2.03 43.58 16 20 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 21 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 22 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 23 C 0.12 5.16 6.31 86.85 0.55 5.71 16 24 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.09 1.24 8.09 -2.39 -0.02 1.23 16 26 H 0.07 1.37 6.18 -2.39 -0.01 1.35 16 27 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 28 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 29 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 30 H 0.11 3.09 7.00 -2.91 -0.02 3.07 16 31 H 0.08 2.09 7.23 -2.39 -0.02 2.07 16 32 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.28 15.59 8.29 -92.70 -0.77 14.82 16 36 H 0.03 1.54 8.03 -2.39 -0.02 1.52 16 37 H 0.04 1.88 6.62 -2.39 -0.02 1.86 16 Total: -1.00 -79.84 304.72 4.48 -75.37 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 1.06 Total: 18.62 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 3.91 Total: -6.32 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -2.46 Total: -86.09 kcal Atomic # 8 Polarization: -45.09 SS G_CDS: -0.07 Total: -45.16 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -79.84 4.48 -75.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274645277.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.318 kcal (2) G-P(sol) polarization free energy of solvation -79.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds