Wall clock time and date at job start Sun Mar 29 2020 23:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86799 * 119.99857 * 2 1 4 4 H 1.48499 * 109.47123 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47541 * 300.00572 * 3 2 1 6 6 H 1.48509 * 109.47035 * 60.00677 * 3 2 1 7 7 C 1.40045 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00113 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00138 * 359.97438 * 7 2 1 10 10 O 1.21690 * 119.99675 * 9.11245 * 9 7 2 11 11 N 1.34767 * 120.00189 * 189.11932 * 9 7 2 12 12 C 1.46930 * 120.63184 * 5.11868 * 11 9 7 13 13 C 1.53190 * 108.77240 * 126.37075 * 12 11 9 14 14 C 1.53038 * 109.31541 * 54.64058 * 13 12 11 15 15 C 1.53050 * 109.53512 * 298.63078 * 14 13 12 16 16 C 1.46936 * 120.63356 * 185.09937 * 11 9 7 17 17 H 1.08994 * 109.58632 * 113.69406 * 16 11 9 18 18 C 1.50699 * 109.58219 * 353.41684 * 16 11 9 19 19 C 1.38243 * 119.99946 * 292.00642 * 18 16 11 20 20 C 1.38238 * 119.99628 * 180.28311 * 19 18 16 21 21 C 1.38234 * 120.00172 * 359.46096 * 20 19 18 22 22 C 1.38239 * 119.99990 * 0.26510 * 21 20 19 23 23 C 1.38231 * 119.99945 * 111.73470 * 18 16 11 24 24 H 0.96998 * 120.00048 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.58587 * 246.15736 * 12 11 9 26 26 H 1.08992 * 109.58418 * 6.58422 * 12 11 9 27 27 H 1.09007 * 109.49609 * 174.58834 * 13 12 11 28 28 H 1.08993 * 109.50491 * 294.65254 * 13 12 11 29 29 H 1.09001 * 109.46352 * 58.65176 * 14 13 12 30 30 H 1.09004 * 109.46487 * 178.62455 * 14 13 12 31 31 H 1.08994 * 109.49705 * 301.41002 * 15 14 13 32 32 H 1.09005 * 109.49530 * 181.31828 * 15 14 13 33 33 H 1.07992 * 120.00114 * 0.02562 * 19 18 16 34 34 H 1.07998 * 119.99687 * 179.74356 * 20 19 18 35 35 H 1.08005 * 119.99997 * 180.27673 * 21 20 19 36 36 H 1.08004 * 119.99790 * 180.02562 * 22 21 20 37 37 H 1.08000 * 120.00633 * 359.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8819 2.3966 -1.2124 6 1 1.8820 2.3964 1.2127 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0697 -2.4871 -0.1670 11 7 1.9363 -3.6403 0.1839 12 6 3.3718 -3.6420 0.4973 13 6 3.5973 -4.4628 1.7710 14 6 2.9921 -5.8565 1.5888 15 6 1.4847 -5.7333 1.3543 16 6 1.2352 -4.9271 0.0759 17 1 1.6129 -5.4777 -0.7856 18 6 -0.2431 -4.6847 -0.0880 19 6 -0.9767 -4.1546 0.9570 20 6 -2.3338 -3.9378 0.8085 21 6 -2.9553 -4.2405 -0.3886 22 6 -2.2207 -4.7652 -1.4354 23 6 -0.8645 -4.9871 -1.2852 24 1 -0.4850 0.8400 0.0004 25 1 3.9254 -4.0891 -0.3284 26 1 3.7122 -2.6190 0.6567 27 1 4.6669 -4.5526 1.9612 28 1 3.1184 -3.9651 2.6141 29 1 3.4545 -6.3440 0.7305 30 1 3.1726 -6.4508 2.4846 31 1 1.0252 -5.2239 2.2013 32 1 1.0506 -6.7275 1.2480 33 1 -0.4903 -3.9139 1.8906 34 1 -2.9077 -3.5276 1.6263 35 1 -4.0148 -4.0669 -0.5060 36 1 -2.7062 -5.0014 -2.3709 37 1 -0.2905 -5.3967 -2.1033 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274802501.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:50:46 Heat of formation + Delta-G solvation = 1.513486 kcal Electronic energy + Delta-G solvation = -20124.891889 eV Core-core repulsion = 17253.332847 eV Total energy + Delta-G solvation = -2871.559041 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.51908 -37.30073 -35.72936 -32.72970 -31.90528 -31.55071 -29.90306 -28.38800 -26.37662 -24.14972 -22.95344 -21.75269 -20.76501 -20.21151 -18.57275 -16.63571 -15.92204 -15.54394 -14.75082 -14.47650 -14.28588 -13.99777 -13.63966 -13.53816 -12.92897 -12.86103 -12.52842 -12.38555 -11.94390 -11.71820 -11.32599 -11.15522 -11.01565 -10.87381 -10.73047 -10.54132 -10.40393 -10.21779 -10.05280 -9.91585 -9.67676 -8.87414 -8.46940 -7.89109 -7.15393 -6.67791 -6.01466 -4.62858 2.39181 2.48785 3.11038 3.19958 3.23133 4.07300 4.44958 4.55386 4.90657 5.17342 5.26836 5.29286 5.56666 5.70904 5.75919 5.81157 5.83853 5.91939 6.00536 6.04072 6.14489 6.24889 6.29517 6.38983 6.42497 6.47464 6.57011 6.59902 6.80646 6.96939 7.04296 7.38915 7.44227 7.48060 7.55979 7.64569 8.04603 8.13227 8.35211 9.02501 9.43110 10.57352 10.75925 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.016158 B = 0.009942 C = 0.006737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.458149 B = 2815.622553 C = 4155.428629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.090 3.910 3 Si 0.902 3.098 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.070 0.930 9 C 0.553 3.447 10 O -0.536 6.536 11 N -0.637 5.637 12 C 0.122 3.878 13 C -0.136 4.136 14 C -0.114 4.114 15 C -0.127 4.127 16 C 0.187 3.813 17 H 0.055 0.945 18 C -0.019 4.019 19 C -0.037 4.037 20 C -0.126 4.126 21 C -0.134 4.134 22 C -0.128 4.128 23 C -0.133 4.133 24 H 0.267 0.733 25 H 0.040 0.960 26 H 0.093 0.907 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.983 -8.870 2.302 9.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.130 4.130 3 Si 0.727 3.273 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.581 4.581 8 H 0.088 0.912 9 C 0.359 3.641 10 O -0.418 6.418 11 N -0.376 5.376 12 C -0.002 4.002 13 C -0.174 4.174 14 C -0.152 4.152 15 C -0.165 4.165 16 C 0.083 3.917 17 H 0.073 0.927 18 C -0.019 4.019 19 C -0.055 4.055 20 C -0.145 4.145 21 C -0.152 4.152 22 C -0.146 4.146 23 C -0.152 4.152 24 H 0.078 0.922 25 H 0.058 0.942 26 H 0.111 0.889 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.149 -8.737 2.201 9.263 hybrid contribution 0.637 1.092 -0.052 1.266 sum 2.786 -7.645 2.149 8.416 Atomic orbital electron populations 1.70004 1.06850 1.27083 1.35313 1.25671 0.94578 1.00070 0.92688 0.86405 0.80555 0.82172 0.78175 1.18838 1.20239 1.20276 1.21013 0.93496 0.89316 1.54228 0.91178 1.18297 0.87160 0.82097 0.76561 1.90763 1.13864 1.83701 1.53442 1.48358 1.08134 1.04419 1.76654 1.21417 0.83312 1.01191 0.94308 1.21955 0.99771 0.96012 0.99682 1.21470 0.95762 0.97102 1.00831 1.21991 0.96151 0.99632 0.98758 1.19768 0.89566 0.86487 0.95859 0.92738 1.19321 0.93310 0.95277 0.94042 1.20443 0.93126 0.94202 0.97744 1.20688 0.94904 1.01514 0.97348 1.20698 0.98578 1.01856 0.94112 1.20661 0.94272 1.01858 0.97804 1.20532 0.94691 1.03794 0.96179 0.92239 0.94177 0.88876 0.92082 0.91797 0.92390 0.92622 0.91518 0.91937 0.88111 0.87941 0.88014 0.87938 0.88041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.27 11.87 55.55 0.66 -21.61 16 2 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 3 Si 0.90 19.92 29.56 -169.99 -5.02 14.90 16 4 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.54 -14.81 8.71 -35.63 -0.31 -15.12 16 8 H 0.07 1.77 5.93 -52.49 -0.31 1.46 16 9 C 0.55 14.93 7.37 -12.99 -0.10 14.84 16 10 O -0.54 -15.73 9.86 5.20 0.05 -15.68 16 11 N -0.64 -13.98 2.97 -168.19 -0.50 -14.48 16 12 C 0.12 2.22 6.30 -3.71 -0.02 2.20 16 13 C -0.14 -2.03 6.08 -26.61 -0.16 -2.19 16 14 C -0.11 -1.57 5.88 -26.69 -0.16 -1.73 16 15 C -0.13 -2.02 5.18 -26.61 -0.14 -2.16 16 16 C 0.19 3.64 3.11 -68.75 -0.21 3.42 16 17 H 0.05 1.01 7.91 -51.93 -0.41 0.60 16 18 C -0.02 -0.40 2.92 -104.62 -0.31 -0.71 16 19 C -0.04 -0.81 6.24 -39.58 -0.25 -1.05 16 20 C -0.13 -2.66 10.02 -39.58 -0.40 -3.05 16 21 C -0.13 -2.66 10.05 -39.58 -0.40 -3.06 16 22 C -0.13 -2.52 10.05 -39.58 -0.40 -2.91 16 23 C -0.13 -2.74 9.53 -39.58 -0.38 -3.12 16 24 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.09 1.80 5.47 -51.93 -0.28 1.52 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.14 6.76 -51.93 -0.35 0.79 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.10 2.26 7.03 -52.49 -0.37 1.89 16 34 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 35 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 36 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 37 H 0.10 1.89 7.97 -52.49 -0.42 1.48 16 LS Contribution 294.90 15.07 4.44 4.44 Total: -1.00 -31.55 294.90 -8.77 -40.32 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.08 Total: 4.40 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -3.32 Total: -12.29 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.16 Total: -36.09 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: 0.05 Total: -15.68 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.55 -8.77 -40.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274802501.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.829 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds