Wall clock time and date at job start Sun Mar 29 2020 23:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86799 * 119.99857 * 2 1 4 4 H 1.48499 * 109.47123 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47541 * 300.00572 * 3 2 1 6 6 H 1.48509 * 109.47035 * 60.00677 * 3 2 1 7 7 C 1.40045 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00113 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00138 * 359.97438 * 7 2 1 10 10 O 1.21690 * 119.99675 * 9.11245 * 9 7 2 11 11 N 1.34767 * 120.00189 * 189.11932 * 9 7 2 12 12 C 1.46930 * 120.63184 * 5.11868 * 11 9 7 13 13 C 1.53190 * 108.77240 * 126.37075 * 12 11 9 14 14 C 1.53038 * 109.31541 * 54.64058 * 13 12 11 15 15 C 1.53050 * 109.53512 * 298.63078 * 14 13 12 16 16 C 1.46936 * 120.63356 * 185.09937 * 11 9 7 17 17 H 1.08994 * 109.58632 * 113.69406 * 16 11 9 18 18 C 1.50699 * 109.58219 * 353.41684 * 16 11 9 19 19 C 1.38243 * 119.99946 * 292.00642 * 18 16 11 20 20 C 1.38238 * 119.99628 * 180.28311 * 19 18 16 21 21 C 1.38234 * 120.00172 * 359.46096 * 20 19 18 22 22 C 1.38239 * 119.99990 * 0.26510 * 21 20 19 23 23 C 1.38231 * 119.99945 * 111.73470 * 18 16 11 24 24 H 0.96998 * 120.00048 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.58587 * 246.15736 * 12 11 9 26 26 H 1.08992 * 109.58418 * 6.58422 * 12 11 9 27 27 H 1.09007 * 109.49609 * 174.58834 * 13 12 11 28 28 H 1.08993 * 109.50491 * 294.65254 * 13 12 11 29 29 H 1.09001 * 109.46352 * 58.65176 * 14 13 12 30 30 H 1.09004 * 109.46487 * 178.62455 * 14 13 12 31 31 H 1.08994 * 109.49705 * 301.41002 * 15 14 13 32 32 H 1.09005 * 109.49530 * 181.31828 * 15 14 13 33 33 H 1.07992 * 120.00114 * 0.02562 * 19 18 16 34 34 H 1.07998 * 119.99687 * 179.74356 * 20 19 18 35 35 H 1.08005 * 119.99997 * 180.27673 * 21 20 19 36 36 H 1.08004 * 119.99790 * 180.02562 * 22 21 20 37 37 H 1.08000 * 120.00633 * 359.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8819 2.3966 -1.2124 6 1 1.8820 2.3964 1.2127 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0697 -2.4871 -0.1670 11 7 1.9363 -3.6403 0.1839 12 6 3.3718 -3.6420 0.4973 13 6 3.5973 -4.4628 1.7710 14 6 2.9921 -5.8565 1.5888 15 6 1.4847 -5.7333 1.3543 16 6 1.2352 -4.9271 0.0759 17 1 1.6129 -5.4777 -0.7856 18 6 -0.2431 -4.6847 -0.0880 19 6 -0.9767 -4.1546 0.9570 20 6 -2.3338 -3.9378 0.8085 21 6 -2.9553 -4.2405 -0.3886 22 6 -2.2207 -4.7652 -1.4354 23 6 -0.8645 -4.9871 -1.2852 24 1 -0.4850 0.8400 0.0004 25 1 3.9254 -4.0891 -0.3284 26 1 3.7122 -2.6190 0.6567 27 1 4.6669 -4.5526 1.9612 28 1 3.1184 -3.9651 2.6141 29 1 3.4545 -6.3440 0.7305 30 1 3.1726 -6.4508 2.4846 31 1 1.0252 -5.2239 2.2013 32 1 1.0506 -6.7275 1.2480 33 1 -0.4903 -3.9139 1.8906 34 1 -2.9077 -3.5276 1.6263 35 1 -4.0148 -4.0669 -0.5060 36 1 -2.7062 -5.0014 -2.3709 37 1 -0.2905 -5.3967 -2.1033 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274802501.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:50:45 Heat of formation + Delta-G solvation = -16.368322 kcal Electronic energy + Delta-G solvation = -20125.667302 eV Core-core repulsion = 17253.332847 eV Total energy + Delta-G solvation = -2872.334455 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.13313 -38.89099 -37.48141 -34.67098 -33.49151 -33.13289 -31.50644 -29.86350 -28.36429 -25.70259 -24.39346 -23.33138 -22.49802 -21.64042 -20.20084 -18.38312 -17.74948 -17.27539 -16.37366 -16.14390 -15.85744 -15.52547 -15.13126 -14.96753 -14.42381 -14.38283 -14.28735 -13.96430 -13.54994 -13.37006 -13.04263 -12.88224 -12.71560 -12.39576 -12.27721 -12.11115 -11.97148 -11.70638 -11.53570 -11.35351 -11.16960 -10.89720 -10.23118 -9.52092 -8.86897 -8.59273 -7.96236 -6.72785 0.79253 0.85862 1.37339 1.38743 1.53731 2.24393 2.55687 2.84014 3.27364 3.69242 3.84279 4.01430 4.06288 4.19025 4.30523 4.33772 4.38663 4.44532 4.50376 4.70436 4.82552 4.86365 4.96148 5.03259 5.08112 5.15797 5.22427 5.25193 5.40845 5.43594 5.43865 5.54534 5.77204 5.86102 5.87632 5.99329 6.20922 6.46618 6.51409 6.96327 7.53573 8.57937 8.77220 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.016158 B = 0.009942 C = 0.006737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.458149 B = 2815.622553 C = 4155.428629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.037 3.963 3 Si 0.982 3.018 4 H -0.249 1.249 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.571 4.571 8 H 0.083 0.917 9 C 0.537 3.463 10 O -0.570 6.570 11 N -0.640 5.640 12 C 0.115 3.885 13 C -0.128 4.128 14 C -0.108 4.108 15 C -0.120 4.120 16 C 0.181 3.819 17 H 0.067 0.933 18 C -0.033 4.033 19 C -0.055 4.055 20 C -0.144 4.144 21 C -0.142 4.142 22 C -0.133 4.133 23 C -0.148 4.148 24 H 0.269 0.731 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.046 0.954 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.576 -9.789 2.041 10.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.172 1.172 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.607 4.607 8 H 0.101 0.899 9 C 0.341 3.659 10 O -0.454 6.454 11 N -0.377 5.377 12 C -0.008 4.008 13 C -0.167 4.167 14 C -0.145 4.145 15 C -0.159 4.159 16 C 0.078 3.922 17 H 0.085 0.915 18 C -0.033 4.033 19 C -0.073 4.073 20 C -0.162 4.162 21 C -0.160 4.160 22 C -0.151 4.151 23 C -0.167 4.167 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.113 0.887 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.129 0.871 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.783 -9.702 1.952 10.595 hybrid contribution 0.113 1.284 0.006 1.289 sum 3.896 -8.418 1.958 9.480 Atomic orbital electron populations 1.70167 1.08964 1.28205 1.37209 1.26724 0.95371 1.04126 0.91620 0.85195 0.79602 0.76734 0.78181 1.17242 1.19969 1.19680 1.21497 0.94365 0.90293 1.54566 0.89950 1.18560 0.87110 0.83645 0.76557 1.90733 1.15095 1.85079 1.54498 1.48217 1.09617 1.04210 1.75683 1.21618 0.81226 1.01230 0.96742 1.21896 1.01825 0.96002 0.96932 1.21470 0.93595 0.96614 1.02839 1.21937 0.98212 0.99650 0.96060 1.20017 0.88335 0.85737 0.98116 0.91512 1.19591 0.94477 0.95233 0.94034 1.20427 0.93786 0.95504 0.97618 1.20982 0.94968 1.01743 0.98510 1.21057 1.00088 1.01309 0.93582 1.21085 0.94191 1.00881 0.98914 1.20898 0.95548 1.03841 0.96379 0.92131 0.92237 0.90619 0.88743 0.93706 0.90684 0.89949 0.93493 0.89866 0.89933 0.87083 0.85309 0.84965 0.86408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.09 11.87 21.83 0.26 -48.83 16 2 C 0.04 2.02 5.50 85.30 0.47 2.49 16 3 Si 0.98 41.32 29.56 68.60 2.03 43.35 16 4 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16 5 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 6 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.57 -31.65 8.71 24.83 0.22 -31.44 16 8 H 0.08 4.19 5.93 -2.91 -0.02 4.18 16 9 C 0.54 29.76 7.37 86.36 0.64 30.40 16 10 O -0.57 -34.62 9.86 -4.32 -0.04 -34.66 16 11 N -0.64 -28.16 2.97 -804.25 -2.39 -30.55 16 12 C 0.11 4.05 6.30 86.36 0.54 4.59 16 13 C -0.13 -3.54 6.08 30.67 0.19 -3.35 16 14 C -0.11 -2.61 5.88 30.62 0.18 -2.43 16 15 C -0.12 -3.67 5.18 30.67 0.16 -3.51 16 16 C 0.18 6.94 3.11 44.22 0.14 7.08 16 17 H 0.07 2.37 7.91 -2.39 -0.02 2.35 16 18 C -0.03 -1.41 2.92 -19.87 -0.06 -1.47 16 19 C -0.05 -2.50 6.24 22.27 0.14 -2.36 16 20 C -0.14 -6.21 10.02 22.27 0.22 -5.99 16 21 C -0.14 -5.60 10.05 22.27 0.22 -5.37 16 22 C -0.13 -5.11 10.05 22.27 0.22 -4.88 16 23 C -0.15 -6.03 9.53 22.27 0.21 -5.82 16 24 H 0.27 14.92 8.29 -92.71 -0.77 14.15 16 25 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.08 2.90 5.47 -2.39 -0.01 2.89 16 27 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.04 1.40 8.14 -2.39 -0.02 1.39 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.05 1.61 6.76 -2.39 -0.02 1.59 16 32 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 33 H 0.08 3.95 7.03 -2.91 -0.02 3.93 16 34 H 0.11 4.41 8.06 -2.91 -0.02 4.38 16 35 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 36 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 37 H 0.12 4.28 7.97 -2.91 -0.02 4.25 16 Total: -1.00 -70.53 294.90 4.40 -66.13 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 1.06 Total: 26.65 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: 3.49 Total: -22.07 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -2.13 Total: -79.39 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -0.04 Total: -34.66 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -70.53 4.40 -66.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274802501.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.757 kcal (2) G-P(sol) polarization free energy of solvation -70.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds