Wall clock time and date at job start Mon Mar 30 2020 00:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 119.99841 * 2 1 4 4 N 1.46499 * 109.47323 * 125.00064 * 3 2 1 5 5 C 1.46502 * 119.99805 * 264.36034 * 4 3 2 6 6 C 1.50701 * 109.46875 * 270.00035 * 5 4 3 7 7 H 1.08001 * 119.99759 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00073 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00050 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99824 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.47189 * 90.00029 * 10 8 6 12 12 H 1.48502 * 109.46912 * 209.99892 * 10 8 6 13 13 H 1.48497 * 109.46951 * 329.99671 * 10 8 6 14 14 C 1.34769 * 120.00243 * 84.35401 * 4 3 2 15 15 O 1.21549 * 120.00303 * 185.90600 * 14 4 3 16 16 C 1.47849 * 119.99816 * 5.90748 * 14 4 3 17 17 C 1.39592 * 120.14407 * 54.20623 * 16 14 4 18 18 C 1.37943 * 119.85383 * 179.72005 * 17 16 14 19 19 C 1.38382 * 120.14218 * 0.27871 * 18 17 16 20 20 C 1.38342 * 120.29376 * 359.97438 * 19 18 17 21 21 C 1.37981 * 120.14505 * 0.02562 * 20 19 18 22 22 C 1.50694 * 120.07182 * 179.97438 * 21 20 19 23 23 H 1.07999 * 120.00145 * 180.02562 * 1 2 3 24 24 H 1.07996 * 120.00352 * 0.02562 * 1 2 3 25 25 H 1.07996 * 120.00279 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.46773 * 4.99394 * 3 2 1 27 27 H 1.09004 * 109.47049 * 245.00103 * 3 2 1 28 28 H 1.08998 * 109.47347 * 29.99364 * 5 4 3 29 29 H 1.08990 * 109.47321 * 149.99822 * 5 4 3 30 30 H 0.96999 * 119.99812 * 179.97438 * 9 8 6 31 31 H 1.08007 * 120.07538 * 359.97438 * 17 16 14 32 32 H 1.07994 * 119.92700 * 180.24934 * 18 17 16 33 33 H 1.07994 * 119.85084 * 179.97438 * 19 18 17 34 34 H 1.07993 * 119.92355 * 180.02562 * 20 19 18 35 35 H 1.09001 * 109.47207 * 85.88924 * 22 21 20 36 36 H 1.09003 * 109.47144 * 205.88694 * 22 21 20 37 37 H 1.08998 * 109.47301 * 325.88271 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.6012 1.9763 2.3872 6 6 2.9981 3.4297 2.3516 7 1 3.4935 3.8329 1.4807 8 6 2.7297 4.2443 3.4311 9 7 3.0765 5.5125 3.4002 10 14 1.8734 3.5465 4.9376 11 1 2.8896 3.0353 5.8922 12 1 1.0733 4.6135 5.5908 13 1 0.9767 2.4362 4.5274 14 6 4.2105 0.7640 1.0170 15 8 4.9406 0.6908 1.9860 16 6 4.6572 0.2298 -0.2872 17 6 4.6419 1.0443 -1.4208 18 6 5.0654 0.5414 -2.6334 19 6 5.4995 -0.7691 -2.7288 20 6 5.5123 -1.5832 -1.6104 21 6 5.0912 -1.0926 -0.3914 22 6 5.1052 -1.9809 0.8257 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5400 0.9352 -0.0004 25 1 1.8500 -0.9352 0.0004 26 1 1.3585 2.1316 0.0895 27 1 2.6212 1.4027 -0.9314 28 1 1.5215 1.8976 2.5141 29 1 3.1018 1.4833 3.2204 30 1 2.8873 6.0856 4.1595 31 1 4.3030 2.0672 -1.3477 32 1 5.0579 1.1717 -3.5103 33 1 5.8297 -1.1580 -3.6807 34 1 5.8526 -2.6049 -1.6916 35 1 6.0920 -1.9488 1.2876 36 1 4.3587 -1.6318 1.5391 37 1 4.8751 -3.0048 0.5310 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292482035.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:24 Heat of formation + Delta-G solvation = 14.641086 kcal Electronic energy + Delta-G solvation = -19330.019206 eV Core-core repulsion = 16459.029420 eV Total energy + Delta-G solvation = -2870.989786 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.08617 -38.00361 -35.78812 -33.24294 -32.63600 -32.16419 -31.12143 -28.21788 -26.88704 -25.62324 -23.67065 -22.20851 -21.15227 -20.02215 -18.72853 -16.92341 -16.87632 -16.03711 -15.61323 -15.34033 -14.86576 -14.26080 -14.11010 -13.66517 -13.54741 -13.11554 -12.93089 -12.82231 -12.37106 -12.06833 -12.02238 -11.67575 -11.60180 -11.40699 -11.13879 -10.99251 -10.90721 -10.53659 -10.15243 -9.57602 -9.27880 -9.14864 -8.72931 -8.60733 -8.57904 -7.75234 -6.10162 -4.09329 1.19980 1.41992 2.39055 3.27697 3.29083 3.35162 3.37242 3.79005 3.95793 4.38886 4.85855 4.90353 4.96297 5.07199 5.18523 5.23441 5.33066 5.37407 5.53424 5.66613 5.72125 5.79999 5.88713 5.96678 5.99617 6.13718 6.28056 6.43166 6.49364 6.60033 6.72109 6.74597 6.86720 6.93701 7.00419 7.33715 7.59052 8.19166 8.44583 8.87321 8.94125 9.50017 11.03036 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.022576 B = 0.006337 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.974005 B = 4417.751339 C = 4637.591487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.163 4.163 3 C 0.128 3.872 4 N -0.582 5.582 5 C 0.216 3.784 6 C -0.531 4.531 7 H 0.075 0.925 8 C 0.074 3.926 9 N -0.896 5.896 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.555 3.445 15 O -0.531 6.531 16 C -0.112 4.112 17 C -0.086 4.086 18 C -0.131 4.131 19 C -0.107 4.107 20 C -0.128 4.128 21 C -0.045 4.045 22 C -0.116 4.116 23 H 0.094 0.906 24 H 0.099 0.901 25 H 0.104 0.896 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.031 0.969 29 H 0.038 0.962 30 H 0.265 0.735 31 H 0.132 0.868 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.017 -13.933 -12.030 18.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.182 4.182 3 C 0.004 3.996 4 N -0.312 5.312 5 C 0.096 3.904 6 C -0.569 4.569 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.341 3.659 15 O -0.409 6.409 16 C -0.115 4.115 17 C -0.105 4.105 18 C -0.149 4.149 19 C -0.125 4.125 20 C -0.146 4.146 21 C -0.046 4.046 22 C -0.172 4.172 23 H 0.112 0.888 24 H 0.117 0.883 25 H 0.122 0.878 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.647 -13.765 -11.361 17.860 hybrid contribution -0.440 -0.100 0.729 0.858 sum -1.088 -13.865 -10.632 17.506 Atomic orbital electron populations 1.23810 0.95768 1.01751 1.01117 1.23428 0.96316 0.99093 0.99399 1.20822 0.93024 0.95358 0.90378 1.47837 1.13421 1.54748 1.15213 1.19702 0.95457 0.93597 0.81679 1.21327 1.39629 0.91915 1.04072 0.90707 1.24838 0.95238 0.94684 0.98119 1.69894 1.47140 1.05055 1.31386 0.86864 0.80223 0.79038 0.83698 1.19854 1.21027 1.18994 1.18179 0.81999 0.78136 0.87555 1.90753 1.53782 1.57444 1.38895 1.20072 1.02561 0.94607 0.94259 1.21326 0.97684 0.99852 0.91612 1.21048 1.00474 0.95859 0.97501 1.21200 0.98954 0.94053 0.98316 1.20921 1.01538 1.00040 0.92139 1.19904 0.96038 0.93108 0.95532 1.20829 1.03649 0.97525 0.95217 0.88766 0.88263 0.87825 0.89142 0.89741 0.95070 0.94376 0.92527 0.85052 0.85727 0.86063 0.85871 0.90438 0.91163 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.37 14.32 29.02 0.42 -1.96 16 2 C -0.16 -2.36 9.80 -36.02 -0.35 -2.71 16 3 C 0.13 2.13 5.61 -5.19 -0.03 2.10 16 4 N -0.58 -12.29 2.45 -177.55 -0.44 -12.72 16 5 C 0.22 5.34 4.25 -5.19 -0.02 5.32 16 6 C -0.53 -15.25 9.94 -34.44 -0.34 -15.59 16 7 H 0.07 2.34 8.06 -52.49 -0.42 1.91 16 8 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 9 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 10 Si 0.87 21.66 27.47 -169.99 -4.67 16.99 16 11 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 14 C 0.55 11.83 6.00 -12.33 -0.07 11.76 16 15 O -0.53 -13.36 15.56 5.32 0.08 -13.27 16 16 C -0.11 -1.91 4.98 -104.97 -0.52 -2.43 16 17 C -0.09 -1.29 7.61 -39.18 -0.30 -1.59 16 18 C -0.13 -1.56 10.03 -39.64 -0.40 -1.96 16 19 C -0.11 -1.17 10.04 -39.49 -0.40 -1.57 16 20 C -0.13 -1.53 9.71 -39.64 -0.38 -1.91 16 21 C -0.04 -0.66 5.91 -104.23 -0.62 -1.28 16 22 C -0.12 -1.61 9.24 36.00 0.33 -1.28 16 23 H 0.09 1.02 8.06 -52.49 -0.42 0.60 16 24 H 0.10 1.22 7.84 -52.49 -0.41 0.81 16 25 H 0.10 1.47 8.06 -52.49 -0.42 1.05 16 26 H 0.09 1.53 7.68 -51.93 -0.40 1.13 16 27 H 0.08 1.27 4.48 -51.93 -0.23 1.03 16 28 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 29 H 0.04 1.01 6.77 -51.93 -0.35 0.66 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.13 1.98 7.31 -52.48 -0.38 1.59 16 32 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 34 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.07 1.13 6.64 -51.93 -0.34 0.79 16 37 H 0.06 0.69 8.11 -51.93 -0.42 0.27 16 LS Contribution 313.86 15.07 4.73 4.73 Total: -1.00 -33.36 313.86 -7.35 -40.71 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.04 Total: 1.45 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -2.79 Total: -11.05 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.34 Total: -39.55 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.08 Total: -13.27 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.36 -7.35 -40.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292482035.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.348 kcal (2) G-P(sol) polarization free energy of solvation -33.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds