Wall clock time and date at job start Mon Mar 30 2020 00:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 119.99841 * 2 1 4 4 N 1.46499 * 109.47323 * 125.00064 * 3 2 1 5 5 C 1.46502 * 119.99805 * 264.36034 * 4 3 2 6 6 C 1.50701 * 109.46875 * 270.00035 * 5 4 3 7 7 H 1.08001 * 119.99759 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00073 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00050 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99824 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.47189 * 90.00029 * 10 8 6 12 12 H 1.48502 * 109.46912 * 209.99892 * 10 8 6 13 13 H 1.48497 * 109.46951 * 329.99671 * 10 8 6 14 14 C 1.34769 * 120.00243 * 84.35401 * 4 3 2 15 15 O 1.21549 * 120.00303 * 185.90600 * 14 4 3 16 16 C 1.47849 * 119.99816 * 5.90748 * 14 4 3 17 17 C 1.39592 * 120.14407 * 54.20623 * 16 14 4 18 18 C 1.37943 * 119.85383 * 179.72005 * 17 16 14 19 19 C 1.38382 * 120.14218 * 0.27871 * 18 17 16 20 20 C 1.38342 * 120.29376 * 359.97438 * 19 18 17 21 21 C 1.37981 * 120.14505 * 0.02562 * 20 19 18 22 22 C 1.50694 * 120.07182 * 179.97438 * 21 20 19 23 23 H 1.07999 * 120.00145 * 180.02562 * 1 2 3 24 24 H 1.07996 * 120.00352 * 0.02562 * 1 2 3 25 25 H 1.07996 * 120.00279 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.46773 * 4.99394 * 3 2 1 27 27 H 1.09004 * 109.47049 * 245.00103 * 3 2 1 28 28 H 1.08998 * 109.47347 * 29.99364 * 5 4 3 29 29 H 1.08990 * 109.47321 * 149.99822 * 5 4 3 30 30 H 0.96999 * 119.99812 * 179.97438 * 9 8 6 31 31 H 1.08007 * 120.07538 * 359.97438 * 17 16 14 32 32 H 1.07994 * 119.92700 * 180.24934 * 18 17 16 33 33 H 1.07994 * 119.85084 * 179.97438 * 19 18 17 34 34 H 1.07993 * 119.92355 * 180.02562 * 20 19 18 35 35 H 1.09001 * 109.47207 * 85.88924 * 22 21 20 36 36 H 1.09003 * 109.47144 * 205.88694 * 22 21 20 37 37 H 1.08998 * 109.47301 * 325.88271 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.6012 1.9763 2.3872 6 6 2.9981 3.4297 2.3516 7 1 3.4935 3.8329 1.4807 8 6 2.7297 4.2443 3.4311 9 7 3.0765 5.5125 3.4002 10 14 1.8734 3.5465 4.9376 11 1 2.8896 3.0353 5.8922 12 1 1.0733 4.6135 5.5908 13 1 0.9767 2.4362 4.5274 14 6 4.2105 0.7640 1.0170 15 8 4.9406 0.6908 1.9860 16 6 4.6572 0.2298 -0.2872 17 6 4.6419 1.0443 -1.4208 18 6 5.0654 0.5414 -2.6334 19 6 5.4995 -0.7691 -2.7288 20 6 5.5123 -1.5832 -1.6104 21 6 5.0912 -1.0926 -0.3914 22 6 5.1052 -1.9809 0.8257 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5400 0.9352 -0.0004 25 1 1.8500 -0.9352 0.0004 26 1 1.3585 2.1316 0.0895 27 1 2.6212 1.4027 -0.9314 28 1 1.5215 1.8976 2.5141 29 1 3.1018 1.4833 3.2204 30 1 2.8873 6.0856 4.1595 31 1 4.3030 2.0672 -1.3477 32 1 5.0579 1.1717 -3.5103 33 1 5.8297 -1.1580 -3.6807 34 1 5.8526 -2.6049 -1.6916 35 1 6.0920 -1.9488 1.2876 36 1 4.3587 -1.6318 1.5391 37 1 4.8751 -3.0048 0.5310 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292482035.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:23 Heat of formation + Delta-G solvation = -5.883513 kcal Electronic energy + Delta-G solvation = -19330.909220 eV Core-core repulsion = 16459.029420 eV Total energy + Delta-G solvation = -2871.879799 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.46315 -39.31384 -37.35280 -35.12045 -33.89169 -33.62629 -32.39064 -30.05019 -28.00069 -27.02498 -25.28461 -23.63347 -22.39874 -21.24312 -20.11873 -19.12940 -18.25112 -17.57199 -16.82775 -16.66588 -16.26307 -15.96895 -15.40979 -15.01106 -14.77055 -14.60870 -14.25599 -14.19907 -14.02720 -13.63288 -13.21379 -13.20188 -13.04470 -12.76598 -12.56054 -12.44687 -12.28212 -11.99595 -11.95757 -11.77034 -10.86962 -10.78510 -10.39861 -9.85806 -9.63895 -9.45865 -8.37633 -6.43341 0.09510 0.40972 1.25928 1.31060 1.33906 1.42752 1.77286 2.27839 2.33531 2.79998 2.96351 3.57313 3.89818 3.91770 4.02362 4.16033 4.18608 4.38624 4.41883 4.54033 4.68173 4.70214 4.73742 4.77099 4.80611 4.89222 5.01415 5.02392 5.23035 5.39875 5.44409 5.47030 5.53011 5.58492 5.67163 5.86440 6.02107 6.19501 6.56396 6.57859 7.14766 7.29450 8.79123 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.022576 B = 0.006337 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.974005 B = 4417.751339 C = 4637.591487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.182 4.182 3 C 0.126 3.874 4 N -0.589 5.589 5 C 0.227 3.773 6 C -0.539 4.539 7 H 0.030 0.970 8 C 0.015 3.985 9 N -0.942 5.942 10 Si 0.945 3.055 11 H -0.275 1.275 12 H -0.271 1.271 13 H -0.241 1.241 14 C 0.549 3.451 15 O -0.586 6.586 16 C -0.141 4.141 17 C -0.102 4.102 18 C -0.124 4.124 19 C -0.091 4.091 20 C -0.120 4.120 21 C -0.058 4.058 22 C -0.112 4.112 23 H 0.120 0.880 24 H 0.103 0.897 25 H 0.106 0.894 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.048 0.952 29 H 0.019 0.981 30 H 0.270 0.730 31 H 0.116 0.884 32 H 0.154 0.846 33 H 0.164 0.836 34 H 0.158 0.842 35 H 0.069 0.931 36 H 0.038 0.962 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.002 -16.681 -13.966 21.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.201 4.201 3 C 0.004 3.996 4 N -0.318 5.318 5 C 0.105 3.895 6 C -0.578 4.578 7 H 0.049 0.951 8 C -0.183 4.183 9 N -0.582 5.582 10 Si 0.768 3.232 11 H -0.201 1.201 12 H -0.196 1.196 13 H -0.164 1.164 14 C 0.338 3.662 15 O -0.467 6.467 16 C -0.144 4.144 17 C -0.121 4.121 18 C -0.142 4.142 19 C -0.109 4.109 20 C -0.138 4.138 21 C -0.059 4.059 22 C -0.169 4.169 23 H 0.139 0.861 24 H 0.121 0.879 25 H 0.124 0.876 26 H 0.100 0.900 27 H 0.116 0.884 28 H 0.066 0.934 29 H 0.037 0.963 30 H 0.079 0.921 31 H 0.134 0.866 32 H 0.172 0.828 33 H 0.182 0.818 34 H 0.176 0.824 35 H 0.088 0.912 36 H 0.057 0.943 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.664 -16.524 -13.351 21.309 hybrid contribution -0.084 0.777 1.176 1.412 sum -1.748 -15.747 -12.175 19.981 Atomic orbital electron populations 1.24068 0.95054 1.03192 0.97830 1.23205 0.96824 0.97704 1.02338 1.21001 0.92470 0.96726 0.89395 1.47911 1.14505 1.54178 1.15181 1.19338 0.95841 0.91070 0.83284 1.21521 1.39279 0.94173 1.02819 0.95145 1.25805 0.95995 0.94879 1.01647 1.70037 1.48668 1.06670 1.32778 0.85750 0.79342 0.79235 0.78888 1.20109 1.19580 1.16377 1.18957 0.81253 0.77138 0.88805 1.90691 1.55136 1.59695 1.41220 1.19823 1.05766 0.96334 0.92448 1.21302 0.99117 0.99156 0.92487 1.21390 0.98975 0.96953 0.96880 1.21714 0.96440 0.93056 0.99705 1.21314 0.99913 1.01733 0.90850 1.20100 0.96492 0.92171 0.97096 1.20803 1.02213 0.99330 0.94528 0.86144 0.87879 0.87564 0.89972 0.88420 0.93402 0.96284 0.92123 0.86637 0.82798 0.81805 0.82394 0.91223 0.94332 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 14.32 67.78 0.97 -2.80 16 2 C -0.18 -5.08 9.80 25.65 0.25 -4.82 16 3 C 0.13 4.30 5.61 85.63 0.48 4.78 16 4 N -0.59 -26.05 2.45 -833.94 -2.05 -28.10 16 5 C 0.23 11.62 4.25 85.63 0.36 11.99 16 6 C -0.54 -32.61 9.94 25.60 0.25 -32.35 16 7 H 0.03 2.04 8.06 -2.91 -0.02 2.02 16 8 C 0.02 0.92 5.47 84.65 0.46 1.38 16 9 N -0.94 -60.14 13.96 21.45 0.30 -59.84 16 10 Si 0.95 45.32 27.47 68.60 1.88 47.21 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 H -0.24 -10.48 6.54 99.48 0.65 -9.83 16 14 C 0.55 24.79 6.00 86.79 0.52 25.31 16 15 O -0.59 -31.55 15.56 -3.87 -0.06 -31.61 16 16 C -0.14 -4.91 4.98 -20.09 -0.10 -5.01 16 17 C -0.10 -3.04 7.61 22.53 0.17 -2.87 16 18 C -0.12 -2.61 10.03 22.23 0.22 -2.39 16 19 C -0.09 -1.57 10.04 22.33 0.22 -1.35 16 20 C -0.12 -2.40 9.71 22.23 0.22 -2.19 16 21 C -0.06 -1.64 5.91 -19.61 -0.12 -1.76 16 22 C -0.11 -3.09 9.24 71.23 0.66 -2.43 16 23 H 0.12 2.17 8.06 -2.91 -0.02 2.15 16 24 H 0.10 2.30 7.84 -2.91 -0.02 2.28 16 25 H 0.11 2.92 8.06 -2.91 -0.02 2.90 16 26 H 0.08 2.87 7.68 -2.39 -0.02 2.85 16 27 H 0.10 3.02 4.48 -2.38 -0.01 3.01 16 28 H 0.05 2.28 7.13 -2.39 -0.02 2.26 16 29 H 0.02 1.05 6.77 -2.39 -0.02 1.03 16 30 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 31 H 0.12 3.68 7.31 -2.91 -0.02 3.66 16 32 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 33 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 34 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.04 1.29 6.64 -2.39 -0.02 1.27 16 37 H 0.10 1.92 8.11 -2.39 -0.02 1.91 16 Total: -1.00 -78.21 313.86 5.65 -72.56 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.99 Total: 14.29 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: 4.58 Total: -14.51 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -1.75 Total: -87.94 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.06 Total: -31.61 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.21 kcal Total: -78.21 5.65 -72.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292482035.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.677 kcal (2) G-P(sol) polarization free energy of solvation -78.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds