Wall clock time and date at job start Sun Mar 29 2020 23:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 179.97438 * 10 9 7 12 12 C 1.46906 * 110.99793 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47183 * 180.02562 * 12 11 10 14 14 C 1.39867 * 126.04206 * 90.02160 * 13 12 11 15 15 N 1.30835 * 108.20326 * 179.97438 * 14 13 12 16 16 N 1.40087 * 108.20780 * 359.97438 * 15 14 13 17 17 C 1.46501 * 126.03943 * 180.02562 * 16 15 14 18 18 C 1.52998 * 109.46936 * 305.02591 * 17 16 15 19 19 F 1.39897 * 109.47026 * 174.99906 * 18 17 16 20 20 F 1.39901 * 109.47268 * 295.00339 * 18 17 16 21 21 C 1.34951 * 107.92162 * 359.76274 * 16 15 14 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 24 24 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 27 27 H 1.00898 * 110.99877 * 56.04956 * 11 10 9 28 28 H 1.08995 * 109.47087 * 299.99901 * 12 11 10 29 29 H 1.09002 * 109.46903 * 59.99922 * 12 11 10 30 30 H 1.08005 * 125.89978 * 359.96316 * 14 13 12 31 31 H 1.08997 * 109.47101 * 65.02577 * 17 16 15 32 32 H 1.08994 * 109.47083 * 185.02768 * 17 16 15 33 33 H 1.09004 * 109.47379 * 54.99974 * 18 17 16 34 34 H 1.07997 * 126.12594 * 180.23775 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 2.4354 -6.0759 0.0018 13 6 1.6474 -7.3605 0.0018 14 6 1.2179 -8.0624 -1.1292 15 7 0.5668 -9.1242 -0.7284 16 7 0.5619 -9.1317 0.6724 17 6 -0.0598 -10.1466 1.5267 18 6 -1.5356 -10.2946 1.1513 19 9 -2.1012 -11.3414 1.8870 20 9 -2.2116 -9.1040 1.4388 21 6 1.2362 -8.0422 1.0960 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8902 25 1 2.8720 -3.6043 -0.8894 26 1 2.8720 -3.6043 0.8905 27 1 0.8742 -4.9846 -0.7800 28 1 3.0633 -6.0353 -0.8882 29 1 3.0633 -6.0344 0.8918 30 1 1.3932 -7.7772 -2.1560 31 1 0.4483 -11.1006 1.3862 32 1 0.0209 -9.8421 2.5702 33 1 -1.6197 -10.5120 0.0865 34 1 1.4132 -7.7627 2.1240 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292857347.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:40 Heat of formation + Delta-G solvation = -32.732747 kcal Electronic energy + Delta-G solvation = -18332.931456 eV Core-core repulsion = 14937.950607 eV Total energy + Delta-G solvation = -3394.980848 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.35159 -47.35106 -41.31851 -36.07933 -34.21812 -32.92692 -30.96157 -29.73779 -28.26304 -25.09607 -24.00535 -23.04019 -21.12790 -20.58713 -20.12028 -18.15792 -17.80963 -17.05933 -16.30923 -16.25548 -15.24910 -15.08808 -14.45257 -14.36791 -14.16127 -13.78338 -13.70974 -13.67750 -13.30610 -12.99745 -12.69497 -12.18951 -12.10087 -11.93222 -11.51437 -11.06120 -10.89260 -10.60478 -10.53037 -9.95678 -9.59164 -9.39982 -9.15806 -8.52806 -8.32266 -7.72996 -5.96895 -3.99682 1.68475 2.09337 2.72352 3.18930 3.35071 3.39460 3.41701 3.81601 3.98362 4.27474 4.46807 4.56095 4.71601 4.87799 4.96028 5.05476 5.37408 5.38856 5.44293 5.69425 5.92438 6.17387 6.37611 6.44274 6.53375 6.77362 7.01785 7.50984 7.53593 7.77252 7.86624 8.01008 8.12916 8.46591 9.07732 9.63904 11.14468 Molecular weight = 259.12amu Principal moments of inertia in cm(-1) A = 0.035188 B = 0.003161 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.536182 B = 8855.751254 C = 9366.029739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.065 3.935 11 N -0.689 5.689 12 C 0.134 3.866 13 C -0.220 4.220 14 C 0.066 3.934 15 N -0.306 5.306 16 N -0.386 5.386 17 C 0.094 3.906 18 C 0.253 3.747 19 F -0.199 7.199 20 F -0.195 7.195 21 C 0.081 3.919 22 H 0.261 0.739 23 H 0.013 0.987 24 H 0.025 0.975 25 H 0.015 0.985 26 H 0.058 0.942 27 H 0.337 0.663 28 H 0.032 0.968 29 H 0.072 0.928 30 H 0.184 0.816 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.223 -22.586 1.948 22.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.063 4.063 11 N -0.320 5.320 12 C 0.003 3.997 13 C -0.231 4.231 14 C -0.121 4.121 15 N -0.126 5.126 16 N -0.169 5.169 17 C -0.030 4.030 18 C 0.199 3.801 19 F -0.180 7.180 20 F -0.176 7.176 21 C -0.063 4.063 22 H 0.071 0.929 23 H 0.032 0.968 24 H 0.043 0.957 25 H 0.034 0.966 26 H 0.076 0.924 27 H 0.154 0.846 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.201 0.799 31 H 0.131 0.869 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.260 -23.606 2.400 23.730 hybrid contribution 1.057 1.716 -0.519 2.081 sum 1.317 -21.891 1.881 22.011 Atomic orbital electron populations 1.69963 1.06036 1.26684 1.50568 1.25006 0.94834 0.99197 0.95338 0.86652 0.79559 0.83157 0.78573 1.20301 1.21295 1.20231 1.21153 0.92944 0.91063 1.50967 0.92801 1.19060 0.94035 0.90408 0.97713 1.22165 0.96974 0.88523 0.98603 1.60645 1.19651 1.01691 1.49998 1.20149 0.92742 0.86294 1.00479 1.20146 1.10539 1.00881 0.91554 1.23865 0.96036 0.92159 1.00082 1.77249 1.24346 1.22979 0.88013 1.48106 1.44001 1.19939 1.04837 1.22549 0.91440 0.93687 0.95284 1.22131 0.88230 0.72724 0.97042 1.93009 1.86508 1.58086 1.80447 1.93059 1.82024 1.47408 1.95117 1.22368 0.95798 0.87641 1.00541 0.92942 0.96836 0.95696 0.96648 0.92386 0.84580 0.95002 0.90925 0.79898 0.86869 0.86309 0.85996 0.80639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.18 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.66 5.23 -27.88 -0.15 0.52 16 10 C 0.07 1.36 5.62 -3.82 -0.02 1.34 16 11 N -0.69 -12.19 6.49 -115.05 -0.75 -12.94 16 12 C 0.13 1.86 6.17 -4.97 -0.03 1.83 16 13 C -0.22 -2.79 5.61 -105.05 -0.59 -3.38 16 14 C 0.07 0.79 11.96 -17.37 -0.21 0.59 16 15 N -0.31 -3.77 12.34 30.62 0.38 -3.39 16 16 N -0.39 -4.12 3.66 -61.37 -0.22 -4.34 16 17 C 0.09 0.67 6.70 -4.04 -0.03 0.64 16 18 C 0.25 2.15 5.42 37.16 0.20 2.35 16 19 F -0.20 -1.74 17.34 2.25 0.04 -1.70 16 20 F -0.19 -2.34 17.32 2.25 0.04 -2.31 16 21 C 0.08 0.92 11.36 -17.22 -0.20 0.73 16 22 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.34 5.93 8.72 -39.29 -0.34 5.59 16 28 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.18 1.78 8.06 -52.48 -0.42 1.36 16 31 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.12 0.61 8.07 -51.93 -0.42 0.20 16 33 H 0.12 0.95 8.05 -51.93 -0.42 0.53 16 34 H 0.18 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 307.96 15.07 4.64 4.64 Total: -1.00 -32.98 307.96 -6.11 -39.09 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -4.53 Total: -0.30 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -1.43 Total: -9.03 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.14 Total: -47.12 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.08 Total: -4.01 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.98 -6.11 -39.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292857347.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.358 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds