Wall clock time and date at job start Sun Mar 29 2020 23:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 179.97438 * 10 9 7 12 12 C 1.46906 * 110.99793 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47183 * 180.02562 * 12 11 10 14 14 C 1.39867 * 126.04206 * 90.02160 * 13 12 11 15 15 N 1.30835 * 108.20326 * 179.97438 * 14 13 12 16 16 N 1.40087 * 108.20780 * 359.97438 * 15 14 13 17 17 C 1.46501 * 126.03943 * 180.02562 * 16 15 14 18 18 C 1.52998 * 109.46936 * 305.02591 * 17 16 15 19 19 F 1.39897 * 109.47026 * 174.99906 * 18 17 16 20 20 F 1.39901 * 109.47268 * 295.00339 * 18 17 16 21 21 C 1.34951 * 107.92162 * 359.76274 * 16 15 14 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 24 24 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 27 27 H 1.00898 * 110.99877 * 56.04956 * 11 10 9 28 28 H 1.08995 * 109.47087 * 299.99901 * 12 11 10 29 29 H 1.09002 * 109.46903 * 59.99922 * 12 11 10 30 30 H 1.08005 * 125.89978 * 359.96316 * 14 13 12 31 31 H 1.08997 * 109.47101 * 65.02577 * 17 16 15 32 32 H 1.08994 * 109.47083 * 185.02768 * 17 16 15 33 33 H 1.09004 * 109.47379 * 54.99974 * 18 17 16 34 34 H 1.07997 * 126.12594 * 180.23775 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 2.4354 -6.0759 0.0018 13 6 1.6474 -7.3605 0.0018 14 6 1.2179 -8.0624 -1.1292 15 7 0.5668 -9.1242 -0.7284 16 7 0.5619 -9.1317 0.6724 17 6 -0.0598 -10.1466 1.5267 18 6 -1.5356 -10.2946 1.1513 19 9 -2.1012 -11.3414 1.8870 20 9 -2.2116 -9.1040 1.4388 21 6 1.2362 -8.0422 1.0960 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8902 25 1 2.8720 -3.6043 -0.8894 26 1 2.8720 -3.6043 0.8905 27 1 0.8742 -4.9846 -0.7800 28 1 3.0633 -6.0353 -0.8882 29 1 3.0633 -6.0344 0.8918 30 1 1.3932 -7.7772 -2.1560 31 1 0.4483 -11.1006 1.3862 32 1 0.0209 -9.8421 2.5702 33 1 -1.6197 -10.5120 0.0865 34 1 1.4132 -7.7627 2.1240 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292857347.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:39 Heat of formation + Delta-G solvation = -55.034155 kcal Electronic energy + Delta-G solvation = -18333.898517 eV Core-core repulsion = 14937.950607 eV Total energy + Delta-G solvation = -3395.947910 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.09539 -48.11741 -42.17859 -37.51637 -35.34306 -34.66065 -32.35431 -30.82194 -29.57997 -26.65789 -24.92297 -24.42791 -22.40373 -21.89786 -21.11432 -18.89283 -18.55047 -18.46763 -17.82371 -17.08918 -16.67114 -16.38540 -15.97236 -15.33201 -15.06179 -14.99405 -14.88069 -14.47808 -14.27273 -14.16354 -14.05337 -13.44619 -13.40527 -13.23931 -12.84974 -12.76188 -12.42173 -12.23358 -11.87961 -11.55483 -11.36260 -11.23919 -10.53451 -10.43427 -9.51068 -9.11165 -8.17508 -6.29255 0.83279 1.36613 1.42224 1.45711 1.53553 1.78551 2.43169 2.54353 3.15777 3.17949 3.40949 3.60339 3.66410 3.82493 4.00070 4.24367 4.31539 4.38145 4.47671 4.63183 4.69023 4.79562 4.88944 5.13244 5.25127 5.48392 5.63321 5.72356 5.82609 5.97038 6.19366 6.36570 6.59601 6.64971 6.88992 7.40128 8.94448 Molecular weight = 259.12amu Principal moments of inertia in cm(-1) A = 0.035188 B = 0.003161 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.536182 B = 8855.751254 C = 9366.029739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.031 3.969 10 C 0.084 3.916 11 N -0.696 5.696 12 C 0.140 3.860 13 C -0.242 4.242 14 C 0.058 3.942 15 N -0.324 5.324 16 N -0.384 5.384 17 C 0.091 3.909 18 C 0.253 3.747 19 F -0.200 7.200 20 F -0.218 7.218 21 C 0.084 3.916 22 H 0.263 0.737 23 H -0.012 1.012 24 H -0.008 1.008 25 H 0.021 0.979 26 H 0.061 0.939 27 H 0.335 0.665 28 H 0.041 0.959 29 H 0.080 0.920 30 H 0.198 0.802 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.127 0.873 34 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.656 -23.186 2.392 23.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.081 0.919 9 C -0.007 4.007 10 C -0.045 4.045 11 N -0.327 5.327 12 C 0.011 3.989 13 C -0.254 4.254 14 C -0.129 4.129 15 N -0.145 5.145 16 N -0.166 5.166 17 C -0.031 4.031 18 C 0.198 3.802 19 F -0.181 7.181 20 F -0.199 7.199 21 C -0.062 4.062 22 H 0.072 0.928 23 H 0.007 0.993 24 H 0.010 0.990 25 H 0.039 0.961 26 H 0.080 0.920 27 H 0.152 0.848 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.215 0.785 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.145 0.855 34 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 1.699 -24.247 2.843 24.473 hybrid contribution 0.550 1.794 -0.629 1.979 sum 2.249 -22.454 2.214 22.674 Atomic orbital electron populations 1.70111 1.07916 1.27822 1.51524 1.26005 0.95750 1.03471 0.94690 0.85468 0.78210 0.77898 0.79259 1.19061 1.20993 1.19033 1.21626 0.93640 0.92239 1.50785 0.91890 1.18926 0.94391 0.92513 0.94846 1.21774 0.95470 0.88242 0.98971 1.60579 1.20335 1.01619 1.50141 1.20113 0.92289 0.85307 1.01211 1.20085 1.11985 1.00861 0.92438 1.24159 0.95794 0.92060 1.00855 1.77207 1.24795 1.23326 0.89163 1.48347 1.43428 1.20261 1.04592 1.22857 0.90185 0.94251 0.95810 1.22296 0.88803 0.71748 0.97337 1.93005 1.86635 1.57972 1.80500 1.93015 1.82715 1.48927 1.95273 1.22757 0.94794 0.87319 1.01304 0.92809 0.99339 0.98973 0.96093 0.92037 0.84758 0.94132 0.90185 0.78508 0.84162 0.84043 0.85549 0.78434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.79 13.29 21.45 0.28 -57.51 16 2 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 3 Si 0.97 44.37 29.54 68.60 2.03 46.40 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.54 -31.23 9.11 25.60 0.23 -31.00 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.03 1.66 5.23 29.85 0.16 1.81 16 10 C 0.08 3.49 5.62 86.30 0.49 3.98 16 11 N -0.70 -24.33 6.49 -517.91 -3.36 -27.69 16 12 C 0.14 3.71 6.17 85.56 0.53 4.24 16 13 C -0.24 -5.80 5.61 -20.14 -0.11 -5.91 16 14 C 0.06 1.34 11.96 85.24 1.02 2.36 16 15 N -0.32 -7.58 12.34 -57.02 -0.70 -8.28 16 16 N -0.38 -7.44 3.66 -348.07 -1.27 -8.72 16 17 C 0.09 1.07 6.70 86.38 0.58 1.65 16 18 C 0.25 3.93 5.42 71.98 0.39 4.33 16 19 F -0.20 -3.20 17.34 44.97 0.78 -2.42 16 20 F -0.22 -5.10 17.32 44.97 0.78 -4.32 16 21 C 0.08 1.74 11.36 83.54 0.95 2.69 16 22 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 23 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 24 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 25 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.34 11.86 8.72 -89.70 -0.78 11.08 16 28 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.20 3.67 8.06 -2.91 -0.02 3.64 16 31 H 0.14 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.14 1.04 8.07 -2.39 -0.02 1.02 16 33 H 0.13 1.84 8.05 -2.38 -0.02 1.82 16 34 H 0.20 3.03 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -71.06 307.96 3.54 -67.51 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.32 Total: 10.52 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 4.69 Total: -15.48 kcal Atomic # 7 Polarization: -97.14 SS G_CDS: -5.05 Total: -102.19 kcal Atomic # 9 Polarization: -8.31 SS G_CDS: 1.56 Total: -6.75 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -71.06 3.54 -67.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292857347.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.479 kcal (2) G-P(sol) polarization free energy of solvation -71.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds