Wall clock time and date at job start Sun Mar 29 2020 23:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 120.00350 * 2 1 4 4 H 1.48500 * 109.46773 * 240.00079 * 3 2 1 5 5 H 1.48495 * 109.46898 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46874 * 120.00301 * 3 2 1 7 7 C 1.38801 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00291 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00051 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00116 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47242 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47170 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.47317 * 179.97438 * 12 11 10 14 14 C 1.46896 * 111.00139 * 175.84157 * 13 12 11 15 15 H 1.08996 * 109.46960 * 12.64040 * 14 13 12 16 16 C 1.52998 * 109.47449 * 132.64667 * 14 13 12 17 17 C 1.52999 * 109.46960 * 295.00045 * 16 14 13 18 18 O 1.42898 * 109.47241 * 179.97438 * 17 16 14 19 19 C 1.53003 * 109.47083 * 252.64651 * 14 13 12 20 20 C 1.53002 * 117.49764 * 12.87024 * 19 14 13 21 21 C 1.53005 * 117.49776 * 304.21200 * 19 14 13 22 22 H 0.97006 * 119.99704 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47523 * 60.00195 * 10 9 7 24 24 H 1.08997 * 109.47001 * 299.99943 * 10 9 7 25 25 H 1.09005 * 109.46889 * 60.00157 * 11 10 9 26 26 H 1.08997 * 109.46943 * 299.99815 * 11 10 9 27 27 H 1.09003 * 109.47419 * 60.00139 * 12 11 10 28 28 H 1.08995 * 109.47435 * 300.00323 * 12 11 10 29 29 H 1.00899 * 110.99774 * 299.79978 * 13 12 11 30 30 H 1.09005 * 109.46791 * 54.99406 * 16 14 13 31 31 H 1.08993 * 109.47515 * 174.99939 * 16 14 13 32 32 H 1.08993 * 109.47016 * 299.99724 * 17 16 14 33 33 H 1.09002 * 109.47306 * 59.99833 * 17 16 14 34 34 H 0.96701 * 114.00011 * 179.97438 * 18 17 16 35 35 H 1.09001 * 115.55123 * 158.54268 * 19 14 13 36 36 H 1.09004 * 117.50026 * 0.02562 * 20 19 14 37 37 H 1.09008 * 117.49972 * 145.02318 * 20 19 14 38 38 H 1.08998 * 117.49937 * 214.97892 * 21 19 14 39 39 H 1.09000 * 117.49921 * 359.97438 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1042 1.6962 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 16 1.1291 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9790 -5.3243 -0.0012 12 6 3.1510 -6.3078 -0.0018 13 7 2.6358 -7.6836 -0.0018 14 6 3.7320 -8.6562 -0.1019 15 1 4.6824 -8.1516 0.0714 16 6 3.5381 -9.7530 0.9471 17 6 3.6608 -9.1474 2.3468 18 8 3.4791 -10.1716 3.3265 19 6 3.7336 -9.2810 -1.4986 20 6 2.8725 -8.6127 -2.5723 21 6 2.4442 -9.9545 -1.9727 22 1 -0.4850 0.8401 0.0004 23 1 3.1243 -3.7315 0.8895 24 1 3.1242 -3.7315 -0.8905 25 1 1.3706 -5.4840 -0.8915 26 1 1.3702 -5.4847 0.8886 27 1 3.7597 -6.1483 0.8882 28 1 3.7595 -6.1474 -0.8917 29 1 2.0709 -7.8581 0.8158 30 1 2.5500 -10.1980 0.8291 31 1 4.3004 -10.5208 0.8153 32 1 4.6488 -8.7025 2.4647 33 1 2.8984 -8.3796 2.4786 34 1 3.5444 -9.8589 4.2392 35 1 4.6783 -9.7237 -1.8145 36 1 2.3052 -7.7278 -2.2838 37 1 3.2505 -8.6162 -3.5948 38 1 2.5406 -10.8400 -2.6009 39 1 1.5949 -9.9529 -1.2895 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308937221.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:06 Heat of formation + Delta-G solvation = -47.098930 kcal Electronic energy + Delta-G solvation = -16990.546599 eV Core-core repulsion = 14252.323516 eV Total energy + Delta-G solvation = -2738.223083 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.10911 -36.97680 -35.47081 -33.15152 -32.42413 -30.36439 -26.48678 -25.60297 -24.21429 -22.66961 -21.72977 -21.06951 -19.58411 -17.79639 -17.42876 -16.42868 -15.93487 -15.18803 -14.86767 -14.80572 -14.63651 -14.12845 -13.86039 -13.46252 -13.01270 -12.59295 -12.30971 -11.93592 -11.74802 -11.53806 -11.39300 -11.30121 -11.05203 -11.00644 -10.80765 -10.61581 -10.43681 -10.27355 -10.21588 -9.92418 -9.50893 -9.04908 -8.46658 -8.29789 -6.52206 -6.22293 -3.92566 3.21526 3.23159 3.27831 3.55033 3.67255 4.02971 4.11822 4.23565 4.64897 4.73719 4.91183 4.99120 5.03934 5.12770 5.13561 5.23751 5.29811 5.41568 5.42621 5.52046 5.55147 5.69070 5.73959 5.80449 5.88167 5.93456 6.00828 6.09828 6.21403 6.32996 6.46626 6.60200 6.75176 7.02969 7.29485 7.33963 7.60416 8.36639 9.23810 10.85842 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.027303 B = 0.003500 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.298727 B = 7997.724843 C = 8557.096823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.071 0.929 9 S -0.132 6.132 10 C -0.112 4.112 11 C -0.094 4.094 12 C 0.064 3.936 13 N -0.685 5.685 14 C 0.119 3.881 15 H 0.061 0.939 16 C -0.127 4.127 17 C 0.071 3.929 18 O -0.574 6.574 19 C -0.154 4.154 20 C -0.160 4.160 21 C -0.171 4.171 22 H 0.268 0.732 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.026 0.974 28 H 0.072 0.928 29 H 0.341 0.659 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.046 0.954 34 H 0.380 0.620 35 H 0.097 0.903 36 H 0.115 0.885 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.775 -18.695 1.470 20.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.744 3.256 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.666 4.666 8 H 0.089 0.911 9 S 0.096 5.904 10 C -0.262 4.262 11 C -0.133 4.133 12 C -0.066 4.066 13 N -0.317 5.317 14 C 0.009 3.991 15 H 0.079 0.921 16 C -0.165 4.165 17 C -0.007 4.007 18 O -0.380 6.380 19 C -0.173 4.173 20 C -0.197 4.197 21 C -0.208 4.208 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.045 0.955 28 H 0.091 0.909 29 H 0.161 0.839 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.227 0.773 35 H 0.116 0.884 36 H 0.133 0.867 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.280 -19.128 0.261 20.134 hybrid contribution 2.410 1.750 1.375 3.281 sum 8.690 -17.377 1.637 19.498 Atomic orbital electron populations 1.70014 1.05919 1.27420 1.47178 1.25007 0.95070 0.99055 0.94605 0.86232 0.79249 0.81261 0.78834 1.19925 1.20804 1.19970 1.22656 0.94476 0.90880 1.58594 0.91063 1.84633 1.09537 0.99350 1.96848 1.23223 1.02833 0.97436 1.02666 1.21234 0.96976 0.92058 1.03058 1.22115 0.97099 0.87088 1.00339 1.60447 1.21893 1.02420 1.46961 1.20914 0.93851 0.91603 0.92724 0.92120 1.21828 1.04084 0.98891 0.91691 1.22265 0.99429 0.89999 0.89042 1.86458 1.95684 1.37245 1.18592 1.22274 0.95068 1.04961 0.94950 1.22935 1.03196 0.97648 0.95962 1.22777 0.98194 0.96026 1.03817 0.92255 0.92452 0.92141 0.90737 0.91933 0.95529 0.90907 0.83940 0.90278 0.90557 0.93774 0.93566 0.77285 0.88445 0.86720 0.90147 0.89933 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.07 13.22 55.49 0.73 -25.34 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.52 -14.91 9.50 30.94 0.29 -14.62 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.13 -3.46 21.44 -107.50 -2.30 -5.76 16 10 C -0.11 -2.25 5.67 37.16 0.21 -2.03 16 11 C -0.09 -1.50 5.51 -26.73 -0.15 -1.65 16 12 C 0.06 0.81 5.24 -3.82 -0.02 0.79 16 13 N -0.68 -7.46 4.57 -106.73 -0.49 -7.95 16 14 C 0.12 1.15 2.58 -67.71 -0.17 0.98 16 15 H 0.06 0.60 7.59 -51.93 -0.39 0.21 16 16 C -0.13 -1.15 4.80 -26.73 -0.13 -1.28 16 17 C 0.07 0.62 6.90 37.16 0.26 0.88 16 18 O -0.57 -5.34 13.66 -35.23 -0.48 -5.82 16 19 C -0.15 -1.51 5.80 -90.61 -0.53 -2.03 16 20 C -0.16 -1.74 9.86 -26.69 -0.26 -2.00 16 21 C -0.17 -1.69 9.73 -26.69 -0.26 -1.95 16 22 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 23 H 0.06 1.13 8.14 -51.91 -0.42 0.71 16 24 H 0.06 1.21 8.14 -51.92 -0.42 0.78 16 25 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.34 3.58 6.73 -39.29 -0.26 3.32 16 30 H 0.08 0.77 7.76 -51.93 -0.40 0.37 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.40 6.77 -51.93 -0.35 0.05 16 34 H 0.38 1.92 9.12 45.56 0.42 2.34 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.11 1.45 6.91 -51.93 -0.36 1.09 16 37 H 0.08 0.82 8.14 -51.92 -0.42 0.39 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.98 7.93 -51.93 -0.41 0.57 16 LS Contribution 333.32 15.07 5.02 5.02 Total: -1.00 -31.48 333.32 -9.36 -40.84 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -5.96 Total: 3.46 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: -0.85 Total: -20.97 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.25 Total: -33.29 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.48 Total: -5.82 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -2.30 Total: -5.76 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.48 -9.36 -40.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308937221.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.259 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds