Wall clock time and date at job start Sun Mar 29 2020 23:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 120.00350 * 2 1 4 4 H 1.48500 * 109.46773 * 240.00079 * 3 2 1 5 5 H 1.48495 * 109.46898 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46874 * 120.00301 * 3 2 1 7 7 C 1.38801 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00291 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00051 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00116 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47242 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47170 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.47317 * 179.97438 * 12 11 10 14 14 C 1.46896 * 111.00139 * 175.84157 * 13 12 11 15 15 H 1.08996 * 109.46960 * 12.64040 * 14 13 12 16 16 C 1.52998 * 109.47449 * 132.64667 * 14 13 12 17 17 C 1.52999 * 109.46960 * 295.00045 * 16 14 13 18 18 O 1.42898 * 109.47241 * 179.97438 * 17 16 14 19 19 C 1.53003 * 109.47083 * 252.64651 * 14 13 12 20 20 C 1.53002 * 117.49764 * 12.87024 * 19 14 13 21 21 C 1.53005 * 117.49776 * 304.21200 * 19 14 13 22 22 H 0.97006 * 119.99704 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47523 * 60.00195 * 10 9 7 24 24 H 1.08997 * 109.47001 * 299.99943 * 10 9 7 25 25 H 1.09005 * 109.46889 * 60.00157 * 11 10 9 26 26 H 1.08997 * 109.46943 * 299.99815 * 11 10 9 27 27 H 1.09003 * 109.47419 * 60.00139 * 12 11 10 28 28 H 1.08995 * 109.47435 * 300.00323 * 12 11 10 29 29 H 1.00899 * 110.99774 * 299.79978 * 13 12 11 30 30 H 1.09005 * 109.46791 * 54.99406 * 16 14 13 31 31 H 1.08993 * 109.47515 * 174.99939 * 16 14 13 32 32 H 1.08993 * 109.47016 * 299.99724 * 17 16 14 33 33 H 1.09002 * 109.47306 * 59.99833 * 17 16 14 34 34 H 0.96701 * 114.00011 * 179.97438 * 18 17 16 35 35 H 1.09001 * 115.55123 * 158.54268 * 19 14 13 36 36 H 1.09004 * 117.50026 * 0.02562 * 20 19 14 37 37 H 1.09008 * 117.49972 * 145.02318 * 20 19 14 38 38 H 1.08998 * 117.49937 * 214.97892 * 21 19 14 39 39 H 1.09000 * 117.49921 * 359.97438 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1042 1.6962 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 16 1.1291 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9790 -5.3243 -0.0012 12 6 3.1510 -6.3078 -0.0018 13 7 2.6358 -7.6836 -0.0018 14 6 3.7320 -8.6562 -0.1019 15 1 4.6824 -8.1516 0.0714 16 6 3.5381 -9.7530 0.9471 17 6 3.6608 -9.1474 2.3468 18 8 3.4791 -10.1716 3.3265 19 6 3.7336 -9.2810 -1.4986 20 6 2.8725 -8.6127 -2.5723 21 6 2.4442 -9.9545 -1.9727 22 1 -0.4850 0.8401 0.0004 23 1 3.1243 -3.7315 0.8895 24 1 3.1242 -3.7315 -0.8905 25 1 1.3706 -5.4840 -0.8915 26 1 1.3702 -5.4847 0.8886 27 1 3.7597 -6.1483 0.8882 28 1 3.7595 -6.1474 -0.8917 29 1 2.0709 -7.8581 0.8158 30 1 2.5500 -10.1980 0.8291 31 1 4.3004 -10.5208 0.8153 32 1 4.6488 -8.7025 2.4647 33 1 2.8984 -8.3796 2.4786 34 1 3.5444 -9.8589 4.2392 35 1 4.6783 -9.7237 -1.8145 36 1 2.3052 -7.7278 -2.2838 37 1 3.2505 -8.6162 -3.5948 38 1 2.5406 -10.8400 -2.6009 39 1 1.5949 -9.9529 -1.2895 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308937221.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:05 Heat of formation + Delta-G solvation = -68.188780 kcal Electronic energy + Delta-G solvation = -16991.461123 eV Core-core repulsion = 14252.323516 eV Total energy + Delta-G solvation = -2739.137607 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.92614 -37.66994 -36.50568 -34.61400 -34.16203 -31.38768 -27.89570 -27.23533 -25.41453 -23.45340 -22.54865 -22.29154 -20.41546 -19.51553 -18.49469 -17.25066 -16.90318 -16.89401 -16.17710 -16.10905 -15.72626 -15.32882 -14.89929 -14.70164 -14.30529 -13.85522 -13.52189 -13.15671 -13.04669 -12.91656 -12.74316 -12.44725 -12.42848 -12.29950 -12.12434 -11.85959 -11.74845 -11.32266 -11.13301 -11.03023 -10.92291 -10.68614 -10.31013 -9.35067 -8.66315 -8.37102 -6.13484 1.31324 1.40755 1.47715 1.75356 2.28922 2.94030 2.97068 3.12415 3.34846 3.37959 3.89670 4.00199 4.04497 4.17185 4.23887 4.30866 4.31563 4.36090 4.42371 4.48049 4.64806 4.69108 4.77032 4.80615 4.83197 4.96253 5.04273 5.16508 5.20023 5.25583 5.31722 5.39239 5.42525 5.59789 6.11400 6.17797 6.46641 6.82616 7.04933 8.72080 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.027303 B = 0.003500 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.298727 B = 7997.724843 C = 8557.096823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.016 3.984 3 Si 0.993 3.007 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.073 0.927 9 S -0.199 6.199 10 C -0.087 4.087 11 C -0.082 4.082 12 C 0.079 3.921 13 N -0.686 5.686 14 C 0.123 3.877 15 H 0.065 0.935 16 C -0.120 4.120 17 C 0.071 3.929 18 O -0.592 6.592 19 C -0.149 4.149 20 C -0.173 4.173 21 C -0.167 4.167 22 H 0.271 0.729 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.037 0.963 28 H 0.072 0.928 29 H 0.345 0.655 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.397 0.603 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.468 -19.181 1.748 21.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.189 4.189 3 Si 0.815 3.185 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.689 4.689 8 H 0.091 0.909 9 S 0.030 5.970 10 C -0.237 4.237 11 C -0.121 4.121 12 C -0.052 4.052 13 N -0.319 5.319 14 C 0.013 3.987 15 H 0.083 0.917 16 C -0.158 4.158 17 C -0.007 4.007 18 O -0.400 6.400 19 C -0.168 4.168 20 C -0.210 4.210 21 C -0.204 4.204 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.090 0.910 29 H 0.165 0.835 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.247 0.753 35 H 0.129 0.871 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.974 -19.629 0.554 21.194 hybrid contribution 1.877 1.798 1.298 2.905 sum 9.851 -17.831 1.852 20.455 Atomic orbital electron populations 1.70152 1.07713 1.28610 1.47924 1.26065 0.96015 1.03105 0.93722 0.85078 0.77955 0.76094 0.79372 1.18943 1.19968 1.18854 1.23025 0.94742 0.92100 1.58986 0.90932 1.84651 1.14181 1.01164 1.97035 1.23153 1.00047 0.97646 1.02808 1.21111 0.98089 0.90356 1.02575 1.21866 0.95384 0.87177 1.00780 1.60371 1.22503 1.01736 1.47322 1.20910 0.93418 0.91395 0.92959 0.91678 1.21735 1.03681 0.98573 0.91798 1.22257 0.99844 0.89832 0.88777 1.86411 1.95744 1.37923 1.19969 1.22376 0.95530 1.04373 0.94554 1.22872 1.04003 0.97451 0.96651 1.22787 0.98061 0.95913 1.03607 0.91959 0.91976 0.92074 0.91751 0.91935 0.94501 0.90996 0.83543 0.91088 0.90243 0.93013 0.93562 0.75320 0.87150 0.88673 0.89626 0.88736 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.08 13.22 21.65 0.29 -54.79 16 2 C 0.02 0.91 5.49 84.86 0.47 1.37 16 3 Si 0.99 43.89 29.55 68.60 2.03 45.91 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.54 -31.39 9.50 67.95 0.65 -30.74 16 8 H 0.07 4.04 7.80 -2.91 -0.02 4.01 16 9 S -0.20 -10.63 21.44 -56.49 -1.21 -11.85 16 10 C -0.09 -3.45 5.67 71.98 0.41 -3.04 16 11 C -0.08 -2.56 5.51 30.59 0.17 -2.39 16 12 C 0.08 1.86 5.24 86.30 0.45 2.31 16 13 N -0.69 -13.97 4.57 -491.58 -2.25 -16.21 16 14 C 0.12 2.14 2.58 44.92 0.12 2.25 16 15 H 0.07 1.12 7.59 -2.39 -0.02 1.10 16 16 C -0.12 -1.95 4.80 30.59 0.15 -1.80 16 17 C 0.07 1.10 6.90 71.98 0.50 1.60 16 18 O -0.59 -9.97 13.66 -148.98 -2.03 -12.01 16 19 C -0.15 -2.65 5.80 -10.79 -0.06 -2.72 16 20 C -0.17 -3.57 9.86 30.62 0.30 -3.27 16 21 C -0.17 -3.05 9.73 30.62 0.30 -2.75 16 22 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 23 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 24 H 0.06 2.41 8.14 -2.40 -0.02 2.39 16 25 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 26 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.34 6.73 6.73 -89.69 -0.60 6.13 16 30 H 0.07 1.28 7.76 -2.38 -0.02 1.27 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 0.71 6.77 -2.39 -0.02 0.70 16 34 H 0.40 3.33 9.12 -74.06 -0.68 2.65 16 35 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.09 2.37 6.91 -2.38 -0.02 2.35 16 37 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.09 1.73 7.93 -2.39 -0.02 1.71 16 Total: -1.00 -67.50 333.32 0.01 -67.49 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -0.25 Total: 20.62 kcal Atomic # 6 Polarization: -42.61 SS G_CDS: 3.44 Total: -39.17 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: -1.96 Total: -71.00 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: -2.03 Total: -12.01 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: -10.63 SS G_CDS: -1.21 Total: -11.85 kcal Total: -67.50 0.01 -67.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308937221.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.697 kcal (2) G-P(sol) polarization free energy of solvation -67.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds