Wall clock time and date at job start Sun Mar 29 2020 23:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86800 * 120.00079 * 2 1 4 4 H 1.48506 * 109.47188 * 270.00194 * 3 2 1 5 5 H 1.48496 * 109.46933 * 30.00136 * 3 2 1 6 6 H 1.48497 * 109.46884 * 150.00068 * 3 2 1 7 7 C 1.39925 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99982 * 197.73741 * 7 2 1 9 9 C 1.41417 * 120.00086 * 17.46117 * 7 2 1 10 10 C 1.40779 * 120.20700 * 204.48320 * 9 7 2 11 11 C 1.37649 * 119.89022 * 179.76866 * 10 9 7 12 12 C 1.38517 * 120.32586 * 0.53127 * 11 10 9 13 13 C 1.39293 * 120.42502 * 359.69990 * 12 11 10 14 14 N 1.39680 * 119.95439 * 180.02562 * 13 12 11 15 15 C 1.46504 * 119.99807 * 0.02562 * 14 13 12 16 16 C 1.53000 * 109.46956 * 179.97438 * 15 14 13 17 17 H 1.08998 * 109.70612 * 59.41790 * 16 15 14 18 18 C 1.53507 * 109.70572 * 180.02562 * 16 15 14 19 19 C 1.53250 * 108.15632 * 182.08613 * 18 16 15 20 20 C 1.50442 * 109.44477 * 313.17384 * 19 18 16 21 21 C 1.30691 * 122.49238 * 17.50914 * 20 19 18 22 22 O 1.35127 * 123.34247 * 359.51524 * 21 20 19 23 23 C 1.38320 * 120.09348 * 0.04343 * 13 12 11 24 24 H 0.96996 * 119.99822 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.05308 * 359.97438 * 10 9 7 26 26 H 1.08000 * 119.83194 * 180.25678 * 11 10 9 27 27 H 1.08000 * 119.78575 * 179.72262 * 12 11 10 28 28 H 0.96996 * 120.00321 * 180.02562 * 14 13 12 29 29 H 1.08998 * 109.47248 * 300.00254 * 15 14 13 30 30 H 1.09001 * 109.46553 * 60.00395 * 15 14 13 31 31 H 1.09003 * 109.72271 * 301.75476 * 18 16 15 32 32 H 1.08997 * 109.72635 * 62.37724 * 18 16 15 33 33 H 1.09006 * 109.47609 * 73.16820 * 19 18 16 34 34 H 1.08998 * 109.47769 * 193.18293 * 19 18 16 35 35 H 1.08001 * 118.75353 * 197.47813 * 20 19 18 36 36 H 1.07996 * 118.32877 * 179.56763 * 21 20 19 37 37 H 1.08007 * 120.15772 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0465 -1.4001 5 1 1.4399 2.6526 0.7001 6 1 3.5399 1.4401 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0495 -1.2342 0.2844 9 6 1.3498 -2.4081 -0.3686 10 6 1.8259 -3.6496 0.0939 11 6 1.1774 -4.8097 -0.2644 12 6 0.0642 -4.7630 -1.0874 13 6 -0.4155 -3.5423 -1.5566 14 7 -1.5391 -3.5066 -2.3856 15 6 -2.2127 -4.7525 -2.7605 16 6 -3.4046 -4.4354 -3.6659 17 1 -3.0589 -3.9182 -4.5609 18 6 -4.1149 -5.7375 -4.0616 19 6 -5.2676 -5.3842 -5.0076 20 6 -6.0458 -4.2290 -4.4392 21 6 -5.5651 -3.4496 -3.5067 22 8 -4.3388 -3.6115 -2.9627 23 6 0.2196 -2.3655 -1.2032 24 1 -0.4850 0.8400 0.0004 25 1 2.6965 -3.6915 0.7315 26 1 1.5410 -5.7612 0.0943 27 1 -0.4353 -5.6789 -1.3668 28 1 -1.8735 -2.6571 -2.7130 29 1 -1.5135 -5.3978 -3.2923 30 1 -2.5642 -5.2600 -1.8621 31 1 -3.4130 -6.4001 -4.5681 32 1 -4.5065 -6.2283 -3.1706 33 1 -4.8659 -5.1072 -5.9824 34 1 -5.9251 -6.2465 -5.1172 35 1 -7.0393 -4.0361 -4.8164 36 1 -6.1796 -2.6354 -3.1522 37 1 -0.1512 -1.4184 -1.5667 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313430830.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:48 Heat of formation + Delta-G solvation = -10.469095 kcal Electronic energy + Delta-G solvation = -18559.513615 eV Core-core repulsion = 15687.434969 eV Total energy + Delta-G solvation = -2872.078645 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.16874 -37.70972 -35.07384 -34.00356 -33.32996 -31.71226 -29.37964 -28.47070 -26.06873 -25.15564 -23.77344 -22.59119 -20.82628 -19.80788 -18.97753 -17.18993 -16.98648 -16.02765 -15.75602 -15.17611 -14.70032 -14.48821 -14.18450 -13.80233 -13.59784 -13.03153 -12.95246 -12.63888 -12.46955 -12.33280 -12.02680 -11.51872 -11.11383 -11.01813 -10.96949 -10.78188 -10.55621 -10.45970 -10.35553 -9.56586 -9.39829 -9.20396 -8.71926 -8.46220 -7.26041 -6.67281 -6.11074 -4.26273 2.23033 2.91205 3.13280 3.16974 3.27286 3.36902 3.41520 4.01900 4.19679 4.58789 4.75507 4.77885 4.88630 5.10260 5.16937 5.29493 5.49594 5.51764 5.70926 5.78805 5.90058 5.91559 6.10184 6.23887 6.31352 6.45141 6.62077 6.92321 7.15484 7.19174 7.42996 7.49589 7.58801 7.86076 8.01133 8.15505 8.22758 8.54183 8.76669 8.89276 9.06636 9.17276 10.31364 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.024973 B = 0.004632 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.960644 B = 6043.875628 C = 6987.256272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.078 3.922 3 Si 0.904 3.096 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.466 4.466 8 H 0.076 0.924 9 C 0.139 3.861 10 C -0.257 4.257 11 C -0.066 4.066 12 C -0.301 4.301 13 C 0.216 3.784 14 N -0.757 5.757 15 C 0.146 3.854 16 C 0.080 3.920 17 H 0.075 0.925 18 C -0.153 4.153 19 C -0.078 4.078 20 C -0.296 4.296 21 C 0.063 3.937 22 O -0.311 6.311 23 C -0.231 4.231 24 H 0.277 0.723 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.393 0.607 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.154 0.846 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.640 -6.143 -8.697 14.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.496 4.496 8 H 0.094 0.906 9 C 0.136 3.864 10 C -0.278 4.278 11 C -0.085 4.085 12 C -0.324 4.324 13 C 0.118 3.882 14 N -0.391 5.391 15 C 0.021 3.979 16 C 0.023 3.977 17 H 0.093 0.907 18 C -0.191 4.191 19 C -0.115 4.115 20 C -0.315 4.315 21 C 0.000 4.000 22 O -0.224 6.224 23 C -0.255 4.255 24 H 0.088 0.912 25 H 0.106 0.894 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.227 0.773 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.135 0.865 36 H 0.172 0.828 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.794 -6.107 -8.501 14.335 hybrid contribution -0.067 0.964 -0.300 1.012 sum -9.861 -5.143 -8.801 14.182 Atomic orbital electron populations 1.69876 1.07472 1.28753 1.35638 1.25874 0.94662 1.01054 0.92379 0.86383 0.80547 0.80967 0.79175 1.19425 1.20473 1.18704 1.19563 0.97994 0.91281 1.40744 0.90590 1.17320 0.90092 0.91834 0.87157 1.20857 1.04671 0.92973 1.09300 1.20272 0.95124 0.96243 0.96842 1.19867 1.04661 0.94342 1.13544 1.17646 0.86134 0.94374 0.90070 1.44283 1.31574 1.06312 1.56888 1.21096 0.90441 0.89068 0.97316 1.22812 0.88597 0.90986 0.95292 0.90749 1.22211 0.98481 0.97423 1.00955 1.20301 0.96127 0.96908 0.98191 1.22458 1.02469 1.01027 1.05590 1.22076 0.85949 0.97424 0.94597 1.86056 1.21224 1.66284 1.48845 1.20724 1.02575 0.95034 1.07119 0.91198 0.89410 0.89660 0.89745 0.77340 0.91492 0.92425 0.89944 0.90401 0.91397 0.90795 0.86478 0.82846 0.86525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.12 10.95 55.55 0.61 -20.51 16 2 C 0.08 2.01 5.14 -17.34 -0.09 1.92 16 3 Si 0.90 19.19 29.59 -169.99 -5.03 14.16 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.47 -12.80 9.05 -37.74 -0.34 -13.14 16 8 H 0.08 2.01 7.91 -52.49 -0.41 1.60 16 9 C 0.14 3.86 5.57 -106.85 -0.60 3.26 16 10 C -0.26 -6.63 9.79 -38.84 -0.38 -7.01 16 11 C -0.07 -1.55 10.01 -39.69 -0.40 -1.95 16 12 C -0.30 -6.98 9.32 -39.09 -0.36 -7.35 16 13 C 0.22 5.18 6.64 -83.86 -0.56 4.63 16 14 N -0.76 -14.98 5.64 -58.68 -0.33 -15.31 16 15 C 0.15 2.31 4.62 -4.04 -0.02 2.29 16 16 C 0.08 1.05 2.93 -26.47 -0.08 0.97 16 17 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 18 C -0.15 -1.61 5.54 -26.34 -0.15 -1.76 16 19 C -0.08 -0.75 6.23 -27.88 -0.17 -0.93 16 20 C -0.30 -3.11 9.97 -36.07 -0.36 -3.47 16 21 C 0.06 0.75 10.88 29.10 0.32 1.07 16 22 O -0.31 -4.60 9.86 -17.08 -0.17 -4.77 16 23 C -0.23 -6.18 8.53 -38.68 -0.33 -6.51 16 24 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 25 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 26 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 27 H 0.08 1.74 6.70 -52.49 -0.35 1.39 16 28 H 0.39 7.64 8.39 -40.82 -0.34 7.30 16 29 H 0.07 0.99 7.94 -51.93 -0.41 0.58 16 30 H 0.06 0.96 7.94 -51.93 -0.41 0.55 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.12 3.23 6.16 -52.48 -0.32 2.90 16 LS Contribution 307.88 15.07 4.64 4.64 Total: -1.00 -29.41 307.88 -8.99 -38.40 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -5.20 Total: 11.36 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: -3.51 Total: -27.97 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.28 Total: -35.83 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.17 Total: -4.77 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.41 -8.99 -38.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313430830.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.931 kcal (2) G-P(sol) polarization free energy of solvation -29.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds