Wall clock time and date at job start Sun Mar 29 2020 23:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86800 * 120.00079 * 2 1 4 4 H 1.48506 * 109.47188 * 270.00194 * 3 2 1 5 5 H 1.48496 * 109.46933 * 30.00136 * 3 2 1 6 6 H 1.48497 * 109.46884 * 150.00068 * 3 2 1 7 7 C 1.39925 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99982 * 197.73741 * 7 2 1 9 9 C 1.41417 * 120.00086 * 17.46117 * 7 2 1 10 10 C 1.40779 * 120.20700 * 204.48320 * 9 7 2 11 11 C 1.37649 * 119.89022 * 179.76866 * 10 9 7 12 12 C 1.38517 * 120.32586 * 0.53127 * 11 10 9 13 13 C 1.39293 * 120.42502 * 359.69990 * 12 11 10 14 14 N 1.39680 * 119.95439 * 180.02562 * 13 12 11 15 15 C 1.46504 * 119.99807 * 0.02562 * 14 13 12 16 16 C 1.53000 * 109.46956 * 179.97438 * 15 14 13 17 17 H 1.08998 * 109.70612 * 59.41790 * 16 15 14 18 18 C 1.53507 * 109.70572 * 180.02562 * 16 15 14 19 19 C 1.53250 * 108.15632 * 182.08613 * 18 16 15 20 20 C 1.50442 * 109.44477 * 313.17384 * 19 18 16 21 21 C 1.30691 * 122.49238 * 17.50914 * 20 19 18 22 22 O 1.35127 * 123.34247 * 359.51524 * 21 20 19 23 23 C 1.38320 * 120.09348 * 0.04343 * 13 12 11 24 24 H 0.96996 * 119.99822 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.05308 * 359.97438 * 10 9 7 26 26 H 1.08000 * 119.83194 * 180.25678 * 11 10 9 27 27 H 1.08000 * 119.78575 * 179.72262 * 12 11 10 28 28 H 0.96996 * 120.00321 * 180.02562 * 14 13 12 29 29 H 1.08998 * 109.47248 * 300.00254 * 15 14 13 30 30 H 1.09001 * 109.46553 * 60.00395 * 15 14 13 31 31 H 1.09003 * 109.72271 * 301.75476 * 18 16 15 32 32 H 1.08997 * 109.72635 * 62.37724 * 18 16 15 33 33 H 1.09006 * 109.47609 * 73.16820 * 19 18 16 34 34 H 1.08998 * 109.47769 * 193.18293 * 19 18 16 35 35 H 1.08001 * 118.75353 * 197.47813 * 20 19 18 36 36 H 1.07996 * 118.32877 * 179.56763 * 21 20 19 37 37 H 1.08007 * 120.15772 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0465 -1.4001 5 1 1.4399 2.6526 0.7001 6 1 3.5399 1.4401 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0495 -1.2342 0.2844 9 6 1.3498 -2.4081 -0.3686 10 6 1.8259 -3.6496 0.0939 11 6 1.1774 -4.8097 -0.2644 12 6 0.0642 -4.7630 -1.0874 13 6 -0.4155 -3.5423 -1.5566 14 7 -1.5391 -3.5066 -2.3856 15 6 -2.2127 -4.7525 -2.7605 16 6 -3.4046 -4.4354 -3.6659 17 1 -3.0589 -3.9182 -4.5609 18 6 -4.1149 -5.7375 -4.0616 19 6 -5.2676 -5.3842 -5.0076 20 6 -6.0458 -4.2290 -4.4392 21 6 -5.5651 -3.4496 -3.5067 22 8 -4.3388 -3.6115 -2.9627 23 6 0.2196 -2.3655 -1.2032 24 1 -0.4850 0.8400 0.0004 25 1 2.6965 -3.6915 0.7315 26 1 1.5410 -5.7612 0.0943 27 1 -0.4353 -5.6789 -1.3668 28 1 -1.8735 -2.6571 -2.7130 29 1 -1.5135 -5.3978 -3.2923 30 1 -2.5642 -5.2600 -1.8621 31 1 -3.4130 -6.4001 -4.5681 32 1 -4.5065 -6.2283 -3.1706 33 1 -4.8659 -5.1072 -5.9824 34 1 -5.9251 -6.2465 -5.1172 35 1 -7.0393 -4.0361 -4.8164 36 1 -6.1796 -2.6354 -3.1522 37 1 -0.1512 -1.4184 -1.5667 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313430830.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:48 Heat of formation + Delta-G solvation = -27.016523 kcal Electronic energy + Delta-G solvation = -18560.231165 eV Core-core repulsion = 15687.434969 eV Total energy + Delta-G solvation = -2872.796195 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.14615 -39.53579 -36.69397 -35.18965 -34.86232 -32.95255 -31.33547 -29.94436 -27.38632 -27.11100 -24.72761 -23.84987 -22.63913 -21.64221 -19.91705 -19.06104 -18.10211 -17.36379 -17.02899 -16.59328 -16.45390 -16.14716 -15.32197 -15.01328 -14.80600 -14.60270 -14.35861 -14.03905 -13.84187 -13.68858 -13.42377 -13.14797 -12.84934 -12.73240 -12.45600 -12.09512 -11.83458 -11.71324 -11.60294 -11.34576 -11.25427 -11.08117 -10.51094 -9.33926 -9.24628 -8.60891 -7.90968 -6.31727 1.09252 1.33918 1.38311 1.38657 1.52100 1.59176 2.23643 2.42572 2.77691 2.84202 3.65926 3.79728 3.86943 3.95245 4.13400 4.27907 4.45213 4.53364 4.59845 4.65370 4.75793 4.79331 4.87480 4.97882 5.00169 5.17979 5.20788 5.30868 5.38724 5.45148 5.59831 5.63773 5.96090 6.11263 6.22247 6.26276 6.58305 6.67743 6.94290 7.04178 7.07032 7.24080 8.39546 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.024973 B = 0.004632 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.960644 B = 6043.875628 C = 6987.256272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.036 3.964 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.505 4.505 8 H 0.073 0.927 9 C 0.109 3.891 10 C -0.285 4.285 11 C -0.062 4.062 12 C -0.303 4.303 13 C 0.219 3.781 14 N -0.753 5.753 15 C 0.144 3.856 16 C 0.082 3.918 17 H 0.076 0.924 18 C -0.147 4.147 19 C -0.082 4.082 20 C -0.282 4.282 21 C 0.032 3.968 22 O -0.342 6.342 23 C -0.261 4.261 24 H 0.284 0.716 25 H 0.091 0.909 26 H 0.121 0.879 27 H 0.115 0.885 28 H 0.392 0.608 29 H 0.084 0.916 30 H 0.051 0.949 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.136 0.864 36 H 0.167 0.833 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.531 -7.147 -9.902 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.178 4.178 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.182 1.182 7 C -0.535 4.535 8 H 0.091 0.909 9 C 0.106 3.894 10 C -0.306 4.306 11 C -0.080 4.080 12 C -0.326 4.326 13 C 0.117 3.883 14 N -0.385 5.385 15 C 0.020 3.980 16 C 0.026 3.974 17 H 0.094 0.906 18 C -0.185 4.185 19 C -0.119 4.119 20 C -0.302 4.302 21 C -0.030 4.030 22 O -0.257 6.257 23 C -0.285 4.285 24 H 0.095 0.905 25 H 0.109 0.891 26 H 0.139 0.861 27 H 0.133 0.867 28 H 0.225 0.775 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.121 0.879 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.154 0.846 36 H 0.184 0.816 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.721 -7.141 -9.728 16.142 hybrid contribution 0.088 1.146 0.022 1.150 sum -10.633 -5.994 -9.706 15.595 Atomic orbital electron populations 1.69943 1.08989 1.30091 1.35987 1.26739 0.95449 1.04380 0.91259 0.85232 0.79103 0.76048 0.79437 1.18747 1.19285 1.18211 1.19830 0.98194 0.92672 1.42789 0.90919 1.17715 0.90930 0.92931 0.87849 1.21033 1.05645 0.93374 1.10504 1.20660 0.94563 0.96960 0.95836 1.20235 1.04484 0.95071 1.12810 1.17791 0.86729 0.93920 0.89817 1.44418 1.30414 1.08008 1.55622 1.21318 0.91588 0.87352 0.97791 1.22758 0.87893 0.92469 0.94313 0.90570 1.22205 0.99031 0.96066 1.01215 1.20416 0.96009 0.97262 0.98207 1.22797 1.03079 1.00237 1.04074 1.22403 0.85454 0.99039 0.96148 1.86003 1.22478 1.67133 1.50041 1.20660 1.03698 0.95409 1.08756 0.90511 0.89091 0.86147 0.86691 0.77475 0.89814 0.93061 0.87946 0.90877 0.90350 0.88866 0.84590 0.81630 0.88456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.37 10.95 21.82 0.24 -45.13 16 2 C 0.04 1.92 5.14 85.25 0.44 2.36 16 3 Si 0.98 40.00 29.59 68.60 2.03 42.03 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16 6 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 7 C -0.51 -28.85 9.05 23.46 0.21 -28.64 16 8 H 0.07 4.02 7.91 -2.91 -0.02 3.99 16 9 C 0.11 6.25 5.57 -21.31 -0.12 6.13 16 10 C -0.28 -14.93 9.79 22.75 0.22 -14.71 16 11 C -0.06 -2.83 10.01 22.20 0.22 -2.61 16 12 C -0.30 -13.65 9.32 22.59 0.21 -13.44 16 13 C 0.22 10.52 6.64 38.16 0.25 10.78 16 14 N -0.75 -29.72 5.64 -339.57 -1.91 -31.63 16 15 C 0.14 4.32 4.62 86.38 0.40 4.72 16 16 C 0.08 2.04 2.93 30.76 0.09 2.13 16 17 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 18 C -0.15 -2.71 5.54 30.85 0.17 -2.54 16 19 C -0.08 -1.32 6.23 29.85 0.19 -1.13 16 20 C -0.28 -5.25 9.97 25.88 0.26 -4.99 16 21 C 0.03 0.72 10.88 68.10 0.74 1.46 16 22 O -0.34 -9.94 9.86 -84.04 -0.83 -10.77 16 23 C -0.26 -14.49 8.53 22.86 0.19 -14.29 16 24 H 0.28 14.18 8.30 -92.71 -0.77 13.41 16 25 H 0.09 4.54 8.06 -2.91 -0.02 4.52 16 26 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 27 H 0.12 4.41 6.70 -2.91 -0.02 4.39 16 28 H 0.39 15.54 8.39 -92.71 -0.78 14.76 16 29 H 0.08 2.26 7.94 -2.39 -0.02 2.24 16 30 H 0.05 1.63 7.94 -2.39 -0.02 1.61 16 31 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 37 H 0.10 5.67 6.16 -2.91 -0.02 5.65 16 Total: -1.00 -65.19 307.88 3.29 -61.90 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: 0.28 Total: 38.36 kcal Atomic # 6 Polarization: -58.25 SS G_CDS: 3.48 Total: -54.77 kcal Atomic # 7 Polarization: -75.08 SS G_CDS: -1.68 Total: -76.76 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -0.83 Total: -10.77 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Total: -65.19 3.29 -61.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313430830.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.883 kcal (2) G-P(sol) polarization free energy of solvation -65.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds