Wall clock time and date at job start Sun Mar 29 2020 23:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86807 * 120.00098 * 2 1 4 4 H 1.48495 * 109.47431 * 275.31488 * 3 2 1 5 5 H 1.48507 * 109.46392 * 35.31218 * 3 2 1 6 6 H 1.48499 * 109.46954 * 155.30883 * 3 2 1 7 7 C 1.39929 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00277 * 346.71072 * 7 2 1 9 9 C 1.41411 * 119.99956 * 166.71676 * 7 2 1 10 10 C 1.40781 * 120.21048 * 331.35144 * 9 7 2 11 11 C 1.37639 * 119.88711 * 180.02562 * 10 9 7 12 12 C 1.38538 * 120.31894 * 359.74112 * 11 10 9 13 13 C 1.39242 * 120.43059 * 0.51948 * 12 11 10 14 14 N 1.39936 * 119.94935 * 179.76091 * 13 12 11 15 15 C 1.34778 * 119.99975 * 326.47864 * 14 13 12 16 16 O 1.21286 * 119.99612 * 355.09456 * 15 14 13 17 17 C 1.50700 * 120.00260 * 175.09067 * 15 14 13 18 18 C 1.54959 * 110.92217 * 66.54246 * 17 15 14 19 19 C 1.54259 * 104.16107 * 156.29745 * 18 17 15 20 20 C 1.53870 * 106.63875 * 336.44636 * 19 18 17 21 21 C 1.54260 * 106.60022 * 359.97438 * 20 19 18 22 22 C 1.38284 * 120.10412 * 359.48339 * 13 12 11 23 23 H 0.97001 * 119.99738 * 359.97438 * 1 2 3 24 24 H 1.08004 * 120.05570 * 0.04330 * 10 9 7 25 25 H 1.07999 * 119.84138 * 180.02562 * 11 10 9 26 26 H 1.07999 * 119.77998 * 180.25392 * 12 11 10 27 27 H 0.97002 * 120.00139 * 146.48705 * 14 13 12 28 28 H 1.09002 * 110.66871 * 303.23932 * 17 15 14 29 29 H 1.09003 * 110.48138 * 37.64003 * 18 17 15 30 30 H 1.09006 * 110.53234 * 274.97745 * 18 17 15 31 31 H 1.09002 * 110.03352 * 217.13783 * 19 18 17 32 32 H 1.09002 * 110.03464 * 95.75587 * 19 18 17 33 33 H 1.09005 * 110.03424 * 119.26574 * 20 19 18 34 34 H 1.09006 * 110.03013 * 240.63992 * 20 19 18 35 35 H 1.09003 * 110.48935 * 142.29243 * 21 20 19 36 36 H 1.09003 * 110.48676 * 264.79848 * 21 20 19 37 37 H 1.07996 * 120.16102 * 180.23537 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.3776 2.1114 -1.3940 5 1 1.5003 2.6176 0.8094 6 1 3.5915 1.4104 0.5848 7 6 2.0079 -1.2118 -0.0005 8 1 1.4897 -2.1347 0.2140 9 6 3.3937 -1.2281 -0.2819 10 6 3.9594 -0.2424 -1.1128 11 6 5.3089 -0.2648 -1.3827 12 6 6.1151 -1.2501 -0.8362 13 6 5.5686 -2.2346 -0.0171 14 7 6.3915 -3.2279 0.5255 15 6 7.4514 -3.6808 -0.1730 16 8 7.6412 -3.2929 -1.3064 17 6 8.4008 -4.6689 0.4542 18 6 7.7002 -6.0288 0.7016 19 6 8.8577 -7.0478 0.7419 20 6 10.0240 -6.4209 -0.0419 21 6 9.5350 -5.0424 -0.5322 22 6 4.2150 -2.2289 0.2657 23 1 -0.4850 0.8401 0.0004 24 1 3.3356 0.5303 -1.5374 25 1 5.7422 0.4919 -2.0198 26 1 7.1736 -1.2570 -1.0505 27 1 6.1989 -3.5907 1.4043 28 1 8.8113 -4.2719 1.3826 29 1 7.0167 -6.2599 -0.1153 30 1 7.1687 -6.0174 1.6533 31 1 8.5500 -7.9811 0.2704 32 1 9.1574 -7.2319 1.7736 33 1 10.8895 -6.3000 0.6096 34 1 10.2829 -7.0505 -0.8932 35 1 10.3416 -4.3110 -0.4807 36 1 9.1505 -5.1138 -1.5496 37 1 3.7909 -2.9898 0.9040 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313432047.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:05 Heat of formation + Delta-G solvation = -35.054207 kcal Electronic energy + Delta-G solvation = -18683.403374 eV Core-core repulsion = 15810.258639 eV Total energy + Delta-G solvation = -2873.144736 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.15241 -38.01522 -36.84750 -34.47211 -33.21553 -30.36740 -29.90374 -28.82748 -28.12379 -25.11527 -22.93973 -21.14496 -20.86556 -20.32177 -19.39684 -17.78304 -17.16995 -16.01510 -15.91193 -15.38044 -14.88070 -14.58287 -14.23957 -13.73612 -13.46989 -13.30835 -12.69931 -12.60195 -12.16825 -12.00818 -11.63107 -11.43397 -11.34715 -11.25322 -11.01489 -10.88986 -10.67941 -10.60590 -10.58300 -10.12528 -9.66975 -9.46875 -9.35759 -8.91453 -7.67886 -7.12411 -6.91541 -4.49956 2.35239 2.64144 3.08367 3.15889 3.24427 3.34439 3.52474 4.00169 4.34498 4.44770 4.54152 4.63683 5.12917 5.19620 5.28944 5.36765 5.41412 5.43921 5.49654 5.67360 5.75750 5.88525 6.03733 6.05195 6.13146 6.23805 6.33939 6.40586 6.55600 6.73486 6.81189 7.15508 7.34515 7.48966 7.66510 7.85491 7.93514 8.14564 8.35116 8.55958 8.66204 8.81834 10.11094 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.044994 B = 0.004372 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.157050 B = 6403.410060 C = 6828.526270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.082 3.918 3 Si 0.915 3.085 4 H -0.272 1.272 5 H -0.294 1.294 6 H -0.241 1.241 7 C -0.447 4.447 8 H 0.090 0.910 9 C 0.106 3.894 10 C -0.242 4.242 11 C -0.068 4.068 12 C -0.231 4.231 13 C 0.167 3.833 14 N -0.669 5.669 15 C 0.514 3.486 16 O -0.521 6.521 17 C -0.115 4.115 18 C -0.115 4.115 19 C -0.123 4.123 20 C -0.125 4.125 21 C -0.105 4.105 22 C -0.233 4.233 23 H 0.285 0.715 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.402 0.598 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.525 -8.692 3.893 17.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.136 4.136 3 Si 0.742 3.258 4 H -0.199 1.199 5 H -0.223 1.223 6 H -0.164 1.164 7 C -0.476 4.476 8 H 0.108 0.892 9 C 0.102 3.898 10 C -0.262 4.262 11 C -0.087 4.087 12 C -0.252 4.252 13 C 0.075 3.925 14 N -0.312 5.312 15 C 0.301 3.699 16 O -0.397 6.397 17 C -0.137 4.137 18 C -0.153 4.153 19 C -0.160 4.160 20 C -0.163 4.163 21 C -0.143 4.143 22 C -0.255 4.255 23 H 0.095 0.905 24 H 0.116 0.884 25 H 0.115 0.885 26 H 0.125 0.875 27 H 0.236 0.764 28 H 0.118 0.882 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 14.427 -8.354 3.101 16.957 hybrid contribution -0.002 0.585 0.437 0.730 sum 14.424 -7.769 3.538 16.761 Atomic orbital electron populations 1.69661 1.08007 1.30164 1.36079 1.26153 0.94810 1.01715 0.90884 0.86284 0.81227 0.79559 0.78682 1.19857 1.22252 1.16396 1.19455 0.91423 0.95627 1.41053 0.89232 1.17490 0.93058 0.90373 0.88876 1.20993 0.95020 1.03866 1.06277 1.20476 0.93604 0.96803 0.97809 1.20337 0.99030 0.98133 1.07725 1.17531 0.89452 0.88257 0.97229 1.43565 1.27872 1.39117 1.20693 1.20536 0.81488 0.81770 0.86146 1.90704 1.73119 1.57951 1.17891 1.22342 0.95950 0.94953 1.00406 1.22373 0.97832 0.92696 1.02410 1.22115 0.95073 0.98411 1.00430 1.22157 0.97957 0.96407 0.99785 1.22217 0.96523 0.96057 0.99487 1.20688 0.90414 1.05159 1.09196 0.90490 0.88383 0.88478 0.87486 0.76377 0.88164 0.90895 0.90879 0.91614 0.91658 0.91834 0.91660 0.91331 0.90105 0.87899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.92 13.93 55.55 0.77 -21.14 16 2 C 0.08 2.18 5.47 -17.35 -0.09 2.09 16 3 Si 0.91 21.08 24.37 -169.99 -4.14 16.94 16 4 H -0.27 -6.13 6.77 56.52 0.38 -5.74 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.24 -5.65 6.48 56.52 0.37 -5.28 16 7 C -0.45 -12.16 9.61 -37.74 -0.36 -12.52 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 9 C 0.11 2.71 5.19 -106.85 -0.55 2.16 16 10 C -0.24 -6.01 6.92 -38.84 -0.27 -6.28 16 11 C -0.07 -1.57 10.02 -39.69 -0.40 -1.96 16 12 C -0.23 -5.25 8.66 -39.10 -0.34 -5.59 16 13 C 0.17 3.61 6.27 -83.77 -0.52 3.09 16 14 N -0.67 -11.25 5.34 -9.91 -0.05 -11.30 16 15 C 0.51 8.39 6.89 -10.98 -0.08 8.32 16 16 O -0.52 -10.63 13.40 5.55 0.07 -10.55 16 17 C -0.12 -1.31 3.28 -89.74 -0.29 -1.61 16 18 C -0.12 -1.12 6.28 -25.04 -0.16 -1.27 16 19 C -0.12 -0.99 6.80 -25.62 -0.17 -1.17 16 20 C -0.13 -1.06 6.80 -25.62 -0.17 -1.24 16 21 C -0.10 -1.16 5.90 -25.08 -0.15 -1.30 16 22 C -0.23 -5.40 9.70 -38.68 -0.38 -5.78 16 23 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 24 H 0.10 2.41 4.20 -52.48 -0.22 2.19 16 25 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 26 H 0.11 2.39 6.40 -52.49 -0.34 2.05 16 27 H 0.40 5.33 8.82 -40.82 -0.36 4.97 16 28 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.07 0.81 8.05 -51.93 -0.42 0.39 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 1.06 7.45 -51.93 -0.39 0.67 16 37 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 LS Contribution 299.53 15.07 4.51 4.51 Total: -1.00 -30.27 299.53 -7.91 -38.18 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -5.14 Total: 6.43 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -3.94 Total: -23.06 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.72 Total: -32.45 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.07 Total: -10.55 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.14 Total: 16.94 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.27 -7.91 -38.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313432047.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.126 kcal (2) G-P(sol) polarization free energy of solvation -30.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds