Wall clock time and date at job start Sun Mar 29 2020 23:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86807 * 120.00098 * 2 1 4 4 H 1.48495 * 109.47431 * 275.31488 * 3 2 1 5 5 H 1.48507 * 109.46392 * 35.31218 * 3 2 1 6 6 H 1.48499 * 109.46954 * 155.30883 * 3 2 1 7 7 C 1.39929 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00277 * 346.71072 * 7 2 1 9 9 C 1.41411 * 119.99956 * 166.71676 * 7 2 1 10 10 C 1.40781 * 120.21048 * 331.35144 * 9 7 2 11 11 C 1.37639 * 119.88711 * 180.02562 * 10 9 7 12 12 C 1.38538 * 120.31894 * 359.74112 * 11 10 9 13 13 C 1.39242 * 120.43059 * 0.51948 * 12 11 10 14 14 N 1.39936 * 119.94935 * 179.76091 * 13 12 11 15 15 C 1.34778 * 119.99975 * 326.47864 * 14 13 12 16 16 O 1.21286 * 119.99612 * 355.09456 * 15 14 13 17 17 C 1.50700 * 120.00260 * 175.09067 * 15 14 13 18 18 C 1.54959 * 110.92217 * 66.54246 * 17 15 14 19 19 C 1.54259 * 104.16107 * 156.29745 * 18 17 15 20 20 C 1.53870 * 106.63875 * 336.44636 * 19 18 17 21 21 C 1.54260 * 106.60022 * 359.97438 * 20 19 18 22 22 C 1.38284 * 120.10412 * 359.48339 * 13 12 11 23 23 H 0.97001 * 119.99738 * 359.97438 * 1 2 3 24 24 H 1.08004 * 120.05570 * 0.04330 * 10 9 7 25 25 H 1.07999 * 119.84138 * 180.02562 * 11 10 9 26 26 H 1.07999 * 119.77998 * 180.25392 * 12 11 10 27 27 H 0.97002 * 120.00139 * 146.48705 * 14 13 12 28 28 H 1.09002 * 110.66871 * 303.23932 * 17 15 14 29 29 H 1.09003 * 110.48138 * 37.64003 * 18 17 15 30 30 H 1.09006 * 110.53234 * 274.97745 * 18 17 15 31 31 H 1.09002 * 110.03352 * 217.13783 * 19 18 17 32 32 H 1.09002 * 110.03464 * 95.75587 * 19 18 17 33 33 H 1.09005 * 110.03424 * 119.26574 * 20 19 18 34 34 H 1.09006 * 110.03013 * 240.63992 * 20 19 18 35 35 H 1.09003 * 110.48935 * 142.29243 * 21 20 19 36 36 H 1.09003 * 110.48676 * 264.79848 * 21 20 19 37 37 H 1.07996 * 120.16102 * 180.23537 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.3776 2.1114 -1.3940 5 1 1.5003 2.6176 0.8094 6 1 3.5915 1.4104 0.5848 7 6 2.0079 -1.2118 -0.0005 8 1 1.4897 -2.1347 0.2140 9 6 3.3937 -1.2281 -0.2819 10 6 3.9594 -0.2424 -1.1128 11 6 5.3089 -0.2648 -1.3827 12 6 6.1151 -1.2501 -0.8362 13 6 5.5686 -2.2346 -0.0171 14 7 6.3915 -3.2279 0.5255 15 6 7.4514 -3.6808 -0.1730 16 8 7.6412 -3.2929 -1.3064 17 6 8.4008 -4.6689 0.4542 18 6 7.7002 -6.0288 0.7016 19 6 8.8577 -7.0478 0.7419 20 6 10.0240 -6.4209 -0.0419 21 6 9.5350 -5.0424 -0.5322 22 6 4.2150 -2.2289 0.2657 23 1 -0.4850 0.8401 0.0004 24 1 3.3356 0.5303 -1.5374 25 1 5.7422 0.4919 -2.0198 26 1 7.1736 -1.2570 -1.0505 27 1 6.1989 -3.5907 1.4043 28 1 8.8113 -4.2719 1.3826 29 1 7.0167 -6.2599 -0.1153 30 1 7.1687 -6.0174 1.6533 31 1 8.5500 -7.9811 0.2704 32 1 9.1574 -7.2319 1.7736 33 1 10.8895 -6.3000 0.6096 34 1 10.2829 -7.0505 -0.8932 35 1 10.3416 -4.3110 -0.4807 36 1 9.1505 -5.1138 -1.5496 37 1 3.7909 -2.9898 0.9040 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313432047.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:05 Heat of formation + Delta-G solvation = -53.309262 kcal Electronic energy + Delta-G solvation = -18684.194973 eV Core-core repulsion = 15810.258639 eV Total energy + Delta-G solvation = -2873.936334 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.51486 -39.52760 -38.02868 -36.13670 -35.06145 -32.23247 -31.23865 -29.64117 -29.40683 -27.05982 -24.30107 -22.91072 -22.31026 -21.08985 -20.68913 -19.55386 -18.43764 -17.83568 -17.15723 -16.70689 -16.45580 -16.00733 -15.66913 -15.32978 -14.63119 -14.48789 -14.26712 -14.22761 -13.90859 -13.52194 -13.04786 -12.89253 -12.62406 -12.49979 -12.09385 -12.05736 -12.01232 -11.89295 -11.72246 -11.56708 -11.24221 -11.19967 -11.00795 -10.56258 -9.58406 -8.89741 -8.87331 -6.54812 0.62948 0.76305 1.27470 1.41557 1.49796 1.68924 2.13064 2.18624 2.62181 3.44225 3.51040 3.62008 3.83725 4.18718 4.30945 4.46843 4.47999 4.51683 4.57037 4.58252 4.61952 4.80160 4.83448 4.93629 4.95666 5.00774 5.11978 5.21582 5.30060 5.32321 5.38994 5.51088 5.57902 5.67799 5.78621 5.90742 6.18704 6.33095 6.61134 6.68240 6.80159 7.24326 8.18495 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.044994 B = 0.004372 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.157050 B = 6403.410060 C = 6828.526270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.047 3.953 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.247 1.247 7 C -0.479 4.479 8 H 0.059 0.941 9 C 0.088 3.912 10 C -0.258 4.258 11 C -0.071 4.071 12 C -0.232 4.232 13 C 0.174 3.826 14 N -0.661 5.661 15 C 0.512 3.488 16 O -0.564 6.564 17 C -0.106 4.106 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.109 4.109 22 C -0.240 4.240 23 H 0.294 0.706 24 H 0.098 0.902 25 H 0.126 0.874 26 H 0.113 0.887 27 H 0.421 0.579 28 H 0.130 0.870 29 H 0.052 0.948 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.095 -9.125 4.962 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.167 4.167 3 Si 0.793 3.207 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.171 1.171 7 C -0.508 4.508 8 H 0.078 0.922 9 C 0.085 3.915 10 C -0.278 4.278 11 C -0.089 4.089 12 C -0.253 4.253 13 C 0.080 3.920 14 N -0.306 5.306 15 C 0.301 3.699 16 O -0.442 6.442 17 C -0.127 4.127 18 C -0.153 4.153 19 C -0.156 4.156 20 C -0.158 4.158 21 C -0.147 4.147 22 C -0.262 4.262 23 H 0.104 0.896 24 H 0.116 0.884 25 H 0.144 0.856 26 H 0.131 0.869 27 H 0.259 0.741 28 H 0.148 0.852 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 17.003 -8.822 4.199 19.610 hybrid contribution -0.652 0.590 0.066 0.882 sum 16.350 -8.232 4.265 18.796 Atomic orbital electron populations 1.69687 1.09048 1.31454 1.37628 1.26813 0.95427 1.04191 0.90301 0.85463 0.79712 0.76357 0.79206 1.18838 1.20703 1.17103 1.19453 0.92522 0.95176 1.43691 0.92234 1.17659 0.92739 0.91645 0.89443 1.21084 0.95915 1.04032 1.06742 1.20805 0.92963 0.97441 0.97725 1.20608 0.99370 0.98030 1.07297 1.17578 0.89416 0.88751 0.96212 1.43560 1.27410 1.38097 1.21555 1.21500 0.81216 0.81596 0.85571 1.90685 1.74022 1.59558 1.19964 1.22424 0.94822 0.94347 1.01115 1.22418 0.98256 0.91944 1.02664 1.22121 0.93970 0.97865 1.01662 1.22144 0.98708 0.94610 1.00306 1.22237 0.96427 0.97968 0.98031 1.20850 0.91100 1.04907 1.09326 0.89554 0.88398 0.85634 0.86896 0.74128 0.85190 0.92944 0.88853 0.91193 0.89596 0.90016 0.91392 0.91090 0.92911 0.86790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.99 13.93 21.82 0.30 -46.69 16 2 C 0.05 2.54 5.47 85.25 0.47 3.00 16 3 Si 0.97 43.38 24.37 68.60 1.67 45.06 16 4 H -0.26 -11.26 6.77 99.48 0.67 -10.59 16 5 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.25 -11.25 6.48 99.48 0.64 -10.60 16 7 C -0.48 -27.00 9.61 23.46 0.23 -26.78 16 8 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 9 C 0.09 4.59 5.19 -21.31 -0.11 4.48 16 10 C -0.26 -12.69 6.92 22.75 0.16 -12.53 16 11 C -0.07 -3.15 10.02 22.20 0.22 -2.92 16 12 C -0.23 -10.19 8.66 22.58 0.20 -9.99 16 13 C 0.17 7.31 6.27 38.10 0.24 7.54 16 14 N -0.66 -20.94 5.34 -303.65 -1.62 -22.56 16 15 C 0.51 15.83 6.89 87.66 0.60 16.44 16 16 O -0.56 -22.58 13.40 -3.05 -0.04 -22.62 16 17 C -0.11 -2.12 3.28 -10.23 -0.03 -2.15 16 18 C -0.11 -1.89 6.28 31.69 0.20 -1.69 16 19 C -0.12 -1.49 6.80 31.31 0.21 -1.28 16 20 C -0.12 -1.66 6.80 31.31 0.21 -1.44 16 21 C -0.11 -2.18 5.90 31.67 0.19 -2.00 16 22 C -0.24 -11.10 9.70 22.85 0.22 -10.88 16 23 H 0.29 14.57 8.30 -92.71 -0.77 13.80 16 24 H 0.10 4.75 4.20 -2.91 -0.01 4.74 16 25 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 26 H 0.11 4.85 6.40 -2.91 -0.02 4.83 16 27 H 0.42 10.05 8.82 -92.71 -0.82 9.23 16 28 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.05 1.08 8.05 -2.39 -0.02 1.06 16 30 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.05 1.36 7.45 -2.39 -0.02 1.34 16 37 H 0.11 4.89 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -66.81 299.53 3.48 -63.33 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.16 Total: 23.69 kcal Atomic # 6 Polarization: -43.20 SS G_CDS: 3.00 Total: -40.21 kcal Atomic # 7 Polarization: -67.94 SS G_CDS: -1.32 Total: -69.25 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.04 Total: -22.62 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.67 Total: 45.06 kcal Total: -66.81 3.48 -63.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313432047.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.021 kcal (2) G-P(sol) polarization free energy of solvation -66.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds