Wall clock time and date at job start Mon Mar 30 2020 00:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 115.56171 * 2 1 4 4 C 1.52999 * 117.49959 * 214.31238 * 2 1 3 5 5 C 1.53000 * 60.00023 * 252.50911 * 4 2 1 6 6 H 1.08999 * 117.50133 * 252.50727 * 5 4 2 7 7 C 1.50709 * 117.49729 * 107.48889 * 5 4 2 8 8 O 1.21282 * 119.99796 * 291.37406 * 7 5 4 9 9 N 1.34777 * 120.00050 * 111.38332 * 7 5 4 10 10 C 1.39934 * 119.99934 * 174.86953 * 9 7 5 11 11 C 1.39293 * 119.94642 * 146.37409 * 10 9 7 12 12 C 1.38486 * 120.42888 * 179.97438 * 11 10 9 13 13 C 1.37689 * 120.32230 * 0.02562 * 12 11 10 14 14 C 1.40744 * 119.88041 * 0.02562 * 13 12 11 15 15 C 1.41407 * 120.20483 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00263 * 151.76067 * 15 14 13 17 17 C 1.39931 * 120.00272 * 331.75634 * 15 14 13 18 18 N 1.30829 * 120.00279 * 349.01518 * 17 15 14 19 19 Si 1.86805 * 120.00173 * 169.00708 * 17 15 14 20 20 H 1.48498 * 109.47125 * 90.00044 * 19 17 15 21 21 H 1.48503 * 109.47269 * 210.00437 * 19 17 15 22 22 H 1.48500 * 109.47053 * 330.00414 * 19 17 15 23 23 C 1.38235 * 119.94913 * 326.09665 * 10 9 7 24 24 H 1.09003 * 109.47348 * 274.31243 * 1 2 3 25 25 H 1.09001 * 109.47140 * 34.31185 * 1 2 3 26 26 H 1.09003 * 109.47082 * 154.31187 * 1 2 3 27 27 H 1.09000 * 109.47546 * 205.68732 * 3 2 1 28 28 H 1.08994 * 109.47592 * 325.68968 * 3 2 1 29 29 H 1.09000 * 109.47421 * 85.68813 * 3 2 1 30 30 H 1.09004 * 117.49509 * 359.97438 * 4 2 1 31 31 H 1.08998 * 117.50048 * 145.02043 * 4 2 1 32 32 H 0.97002 * 119.99779 * 354.86305 * 9 7 5 33 33 H 1.07999 * 119.78535 * 359.97438 * 11 10 9 34 34 H 1.07997 * 119.84008 * 180.02562 * 12 11 10 35 35 H 1.07997 * 120.05933 * 180.02562 * 13 12 11 36 36 H 0.96996 * 120.00255 * 179.97438 * 18 17 15 37 37 H 1.08001 * 120.16042 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3802 0.0000 4 6 2.2365 -1.1210 -0.7650 5 6 2.2365 -1.1210 0.7650 6 1 3.1715 -0.8752 1.2683 7 6 1.3720 -2.1407 1.4608 8 8 0.1638 -2.0533 1.4012 9 7 1.9415 -3.1496 2.1494 10 6 1.1432 -4.0336 2.8838 11 6 1.5138 -5.3712 3.0015 12 6 0.7315 -6.2546 3.7264 13 6 -0.4226 -5.8199 4.3387 14 6 -0.8102 -4.4714 4.2275 15 6 -1.9944 -4.0177 4.8532 16 1 -2.0775 -2.9886 5.1702 17 6 -3.0587 -4.9020 5.0615 18 7 -3.0508 -6.0805 4.4935 19 14 -4.4907 -4.3998 6.1508 20 1 -5.5307 -3.7343 5.3257 21 1 -5.0681 -5.6060 6.7967 22 1 -4.0118 -3.4600 7.1960 23 6 -0.0089 -3.5769 3.4962 24 1 -0.3634 0.0773 1.0248 25 1 -0.3633 0.8488 -0.5793 26 1 -0.3633 -0.9261 -0.4455 27 1 3.1824 1.3084 -0.4454 28 1 1.5812 2.0742 -0.5792 29 1 2.2772 1.7413 1.0247 30 1 1.6112 -1.8587 -1.2680 31 1 3.1715 -0.8751 -1.2683 32 1 2.9048 -3.2630 2.1358 33 1 2.4171 -5.7216 2.5244 34 1 1.0280 -7.2895 3.8118 35 1 -1.0293 -6.5123 4.9033 36 1 -3.7883 -6.6936 4.6383 37 1 -0.2945 -2.5390 3.4096 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313432936.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:20 Heat of formation + Delta-G solvation = 1.327960 kcal Electronic energy + Delta-G solvation = -18800.803686 eV Core-core repulsion = 15929.236600 eV Total energy + Delta-G solvation = -2871.567086 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.11373 -37.96507 -36.49851 -34.34949 -32.96582 -29.78172 -29.66997 -28.01002 -27.36531 -25.27521 -24.05782 -21.30154 -20.79461 -19.70096 -18.89018 -17.52179 -16.74726 -15.52374 -15.05591 -14.86307 -14.54513 -14.16214 -14.04614 -13.60640 -13.15464 -12.98296 -12.75407 -12.44379 -12.09425 -11.94434 -11.79427 -11.62501 -11.27811 -11.17396 -11.05455 -10.61900 -10.47865 -10.15975 -10.02951 -9.76362 -9.69741 -9.32870 -9.02582 -8.75783 -7.38415 -6.84781 -6.63021 -4.31406 2.57878 2.86118 3.11932 3.16697 3.20586 3.30237 3.58356 3.89979 4.01177 4.65842 4.70790 4.75197 4.87970 5.09486 5.28200 5.54673 5.61863 5.65962 5.75065 5.90416 5.94377 6.04531 6.12942 6.27189 6.29161 6.41500 6.67914 6.85778 7.05568 7.09407 7.11453 7.30849 7.60974 7.76963 8.01217 8.12721 8.23508 8.32409 8.68536 8.81518 8.98689 9.02463 10.30263 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.023924 B = 0.005238 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.100089 B = 5343.966124 C = 6242.312214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.094 4.094 3 C -0.115 4.115 4 C -0.150 4.150 5 C -0.186 4.186 6 H 0.119 0.881 7 C 0.531 3.469 8 O -0.509 6.509 9 N -0.667 5.667 10 C 0.150 3.850 11 C -0.260 4.260 12 C -0.094 4.094 13 C -0.168 4.168 14 C 0.119 3.881 15 C -0.458 4.458 16 H 0.076 0.924 17 C 0.074 3.926 18 N -0.802 5.802 19 Si 0.911 3.089 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.208 4.208 24 H 0.070 0.930 25 H 0.046 0.954 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.397 0.603 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.279 0.721 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.363 8.216 -6.320 13.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.094 4.094 3 C -0.172 4.172 4 C -0.188 4.188 5 C -0.207 4.207 6 H 0.137 0.863 7 C 0.317 3.683 8 O -0.383 6.383 9 N -0.310 5.310 10 C 0.059 3.941 11 C -0.281 4.281 12 C -0.114 4.114 13 C -0.188 4.188 14 C 0.116 3.884 15 C -0.488 4.488 16 H 0.094 0.906 17 C -0.143 4.143 18 N -0.428 5.428 19 Si 0.735 3.265 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.186 1.186 23 C -0.229 4.229 24 H 0.089 0.911 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.231 0.769 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.139 0.861 36 H 0.089 0.911 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.335 8.110 -6.391 13.270 hybrid contribution -0.021 -0.097 0.412 0.424 sum 8.314 8.013 -5.979 13.003 Atomic orbital electron populations 1.21371 0.90493 1.01344 1.02930 1.21564 0.96144 0.90328 1.01413 1.21386 0.99723 0.93973 1.02133 1.23207 1.02646 1.01768 0.91146 1.22387 1.01859 1.00919 0.95553 0.86281 1.19653 0.88373 0.81499 0.78739 1.90765 1.14196 1.73641 1.59715 1.43452 1.09871 1.29044 1.48677 1.17449 0.93447 0.88533 0.94703 1.20064 1.03619 0.91955 1.12451 1.20482 0.95558 0.96855 0.98460 1.21401 0.96116 0.97397 1.03852 1.17508 0.91294 0.91341 0.88306 1.19532 0.98012 0.97194 1.34054 0.90619 1.25875 0.99723 0.94303 0.94369 1.69803 1.31129 1.07248 1.34618 0.86278 0.80638 0.79000 0.80563 1.19537 1.20185 1.18576 1.20973 0.98069 1.00088 1.03773 0.91110 0.93547 0.91518 0.92482 0.91737 0.92007 0.88269 0.88134 0.76904 0.89347 0.89060 0.86101 0.91059 0.87581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.52 8.09 37.16 0.30 -1.22 16 2 C -0.09 -1.16 2.70 -154.51 -0.42 -1.58 16 3 C -0.12 -1.09 9.85 37.15 0.37 -0.72 16 4 C -0.15 -1.72 9.52 -26.73 -0.25 -1.97 16 5 C -0.19 -2.45 5.91 -91.77 -0.54 -2.99 16 6 H 0.12 1.28 8.14 -51.93 -0.42 0.85 16 7 C 0.53 9.71 7.33 -10.98 -0.08 9.63 16 8 O -0.51 -11.40 10.82 5.56 0.06 -11.34 16 9 N -0.67 -12.23 5.34 -9.91 -0.05 -12.29 16 10 C 0.15 3.48 6.26 -83.77 -0.52 2.95 16 11 C -0.26 -5.83 9.97 -39.10 -0.39 -6.22 16 12 C -0.09 -2.25 10.02 -39.69 -0.40 -2.65 16 13 C -0.17 -4.48 8.66 -38.84 -0.34 -4.82 16 14 C 0.12 3.31 5.55 -106.85 -0.59 2.72 16 15 C -0.46 -12.76 9.06 -37.74 -0.34 -13.10 16 16 H 0.08 2.05 7.87 -52.49 -0.41 1.64 16 17 C 0.07 1.93 5.25 -17.34 -0.09 1.83 16 18 N -0.80 -21.52 10.82 55.55 0.60 -20.92 16 19 Si 0.91 19.47 29.57 -169.99 -5.03 14.44 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 23 C -0.21 -5.47 8.39 -38.69 -0.32 -5.79 16 24 H 0.07 1.19 7.26 -51.93 -0.38 0.81 16 25 H 0.05 0.56 7.92 -51.93 -0.41 0.15 16 26 H 0.07 1.09 7.01 -51.93 -0.36 0.73 16 27 H 0.06 0.45 7.90 -51.93 -0.41 0.04 16 28 H 0.06 0.55 7.92 -51.93 -0.41 0.14 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.10 1.25 8.05 -51.93 -0.42 0.83 16 31 H 0.10 0.88 8.05 -51.93 -0.42 0.46 16 32 H 0.40 5.68 8.82 -40.82 -0.36 5.32 16 33 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.12 3.31 6.18 -52.49 -0.32 2.99 16 36 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 37 H 0.11 2.87 6.44 -52.49 -0.34 2.53 16 LS Contribution 308.56 15.07 4.65 4.65 Total: -1.00 -30.79 308.56 -8.47 -39.26 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -5.07 Total: 10.11 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -3.63 Total: -23.93 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.55 Total: -33.20 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.06 Total: -11.34 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.79 -8.47 -39.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313432936.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.586 kcal (2) G-P(sol) polarization free energy of solvation -30.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds