Wall clock time and date at job start Sun Mar 29 2020 23:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86808 * 119.99881 * 2 1 4 4 H 1.48495 * 109.47228 * 240.00244 * 3 2 1 5 5 H 1.48500 * 109.46948 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46818 * 119.99979 * 3 2 1 7 7 C 1.40227 * 120.00501 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00234 * 197.86852 * 7 2 1 9 9 C 1.41111 * 119.99666 * 17.85883 * 7 2 1 10 10 C 1.40881 * 120.10299 * 204.63431 * 9 7 2 11 11 C 1.36320 * 119.89411 * 180.02562 * 10 9 7 12 12 C 1.40017 * 120.10465 * 0.02562 * 11 10 9 13 13 C 1.47642 * 119.89501 * 179.97438 * 12 11 10 14 14 O 1.21584 * 120.00178 * 0.02562 * 13 12 11 15 15 N 1.34781 * 119.99554 * 180.02562 * 13 12 11 16 16 C 1.46501 * 119.99496 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.46927 * 179.97438 * 16 15 13 18 18 C 1.53783 * 113.61687 * 274.13641 * 17 16 15 19 19 C 1.53955 * 87.02003 * 220.04850 * 18 17 16 20 20 C 1.53781 * 113.61232 * 176.52783 * 17 16 15 21 21 C 1.40016 * 120.20767 * 0.25865 * 12 11 10 22 22 C 1.36316 * 120.10714 * 359.43285 * 21 12 11 23 23 H 0.96998 * 120.00197 * 0.02562 * 1 2 3 24 24 H 1.08001 * 120.05574 * 0.02562 * 10 9 7 25 25 H 1.08000 * 119.95146 * 179.97438 * 11 10 9 26 26 H 0.96994 * 120.00274 * 359.97438 * 15 13 12 27 27 H 1.09000 * 109.47124 * 300.00220 * 16 15 13 28 28 H 1.08998 * 109.47160 * 60.00091 * 16 15 13 29 29 H 1.09000 * 112.84658 * 45.34006 * 17 16 15 30 30 H 1.08998 * 113.61004 * 334.57115 * 18 17 16 31 31 H 1.09001 * 113.60855 * 105.47084 * 18 17 16 32 32 H 1.08997 * 113.53867 * 270.81503 * 19 18 17 33 33 H 1.08994 * 113.74154 * 139.94168 * 19 18 17 34 34 H 1.08997 * 113.61447 * 254.52893 * 20 17 16 35 35 H 1.08993 * 113.61819 * 25.35315 * 20 17 16 36 36 H 1.08000 * 119.94532 * 179.72883 * 21 12 11 37 37 H 1.07995 * 120.05570 * 180.25331 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0941 1.6966 -1.2125 5 1 1.2754 2.7465 0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0076 -1.2143 -0.0005 8 1 3.0485 -1.2370 0.2864 9 6 1.3531 -2.4068 -0.3759 10 6 1.8268 -3.6494 0.0893 11 6 1.1915 -4.7987 -0.2763 12 6 0.0703 -4.7457 -1.1133 13 6 -0.6138 -5.9935 -1.5069 14 8 -0.2037 -7.0648 -1.1040 15 7 -1.6930 -5.9448 -2.3129 16 6 -2.3715 -7.1830 -2.7039 17 6 -3.5560 -6.8501 -3.6132 18 6 -4.8462 -6.5148 -2.8465 19 6 -5.5988 -7.3201 -3.9213 20 6 -4.2881 -8.0912 -4.1503 21 6 -0.4006 -3.5136 -1.5829 22 6 0.2243 -2.3585 -1.2176 23 1 -0.4850 0.8400 -0.0004 24 1 2.6918 -3.6913 0.7346 25 1 1.5541 -5.7518 0.0794 26 1 -2.0204 -5.0902 -2.6340 27 1 -1.6728 -7.8272 -3.2377 28 1 -2.7313 -7.6971 -1.8127 29 1 -3.3054 -6.1228 -4.3855 30 1 -4.8926 -6.9619 -1.8535 31 1 -5.0897 -5.4524 -2.8453 32 1 -5.9080 -6.7207 -4.7775 33 1 -6.4045 -7.9371 -3.5234 34 1 -4.0819 -8.2996 -5.2001 35 1 -4.1806 -8.9705 -3.5153 36 1 -1.2632 -3.4780 -2.2319 37 1 -0.1421 -1.4083 -1.5771 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332438551.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:18 Heat of formation + Delta-G solvation = -16.889559 kcal Electronic energy + Delta-G solvation = -18261.817990 eV Core-core repulsion = 15389.460933 eV Total energy + Delta-G solvation = -2872.357057 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.46734 -38.48206 -37.01311 -33.87556 -33.84397 -30.38418 -29.43604 -28.10617 -25.80185 -25.63022 -22.95304 -21.64266 -20.86745 -19.92156 -19.15969 -17.52152 -16.90595 -15.90580 -15.51670 -15.11683 -14.62211 -14.42330 -13.98366 -13.67692 -13.19783 -13.00658 -12.73672 -12.56833 -12.16419 -11.98980 -11.85619 -11.64235 -11.34696 -11.26176 -10.98141 -10.69973 -10.63615 -10.47982 -10.32797 -10.05235 -9.54944 -9.33895 -8.92391 -8.53010 -7.71087 -7.53083 -7.02913 -4.59609 2.25479 2.92833 2.94390 2.98733 3.04533 3.74119 3.81758 3.89807 4.49341 4.56749 4.59134 4.63895 4.76721 5.26662 5.41831 5.57522 5.58398 5.62954 5.72804 5.78279 5.88414 5.91135 6.05643 6.15350 6.19012 6.33293 6.38482 6.77673 6.83383 6.98048 7.09200 7.14661 7.44443 7.66890 7.80609 7.86671 8.08014 8.28793 8.40488 8.63799 8.76268 9.11928 9.89139 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.031118 B = 0.003985 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.587941 B = 7024.412215 C = 7768.138400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.444 4.444 8 H 0.084 0.916 9 C 0.129 3.871 10 C -0.239 4.239 11 C -0.022 4.022 12 C -0.284 4.284 13 C 0.570 3.430 14 O -0.578 6.578 15 N -0.741 5.741 16 C 0.134 3.866 17 C -0.124 4.124 18 C -0.137 4.137 19 C -0.143 4.143 20 C -0.132 4.132 21 C -0.063 4.063 22 C -0.179 4.179 23 H 0.287 0.713 24 H 0.098 0.902 25 H 0.101 0.899 26 H 0.397 0.603 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.140 -4.809 -6.758 11.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.146 4.146 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.472 4.472 8 H 0.102 0.898 9 C 0.126 3.874 10 C -0.259 4.259 11 C -0.042 4.042 12 C -0.289 4.289 13 C 0.365 3.635 14 O -0.460 6.460 15 N -0.394 5.394 16 C 0.009 3.991 17 C -0.143 4.143 18 C -0.174 4.174 19 C -0.180 4.180 20 C -0.169 4.169 21 C -0.082 4.082 22 C -0.198 4.198 23 H 0.098 0.902 24 H 0.116 0.884 25 H 0.119 0.881 26 H 0.232 0.768 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.080 -5.418 -6.459 11.677 hybrid contribution 0.074 1.230 -0.120 1.238 sum -8.006 -4.188 -6.579 11.177 Atomic orbital electron populations 1.69734 1.07910 1.30127 1.31779 1.26092 0.94804 1.01851 0.91889 0.86264 0.80208 0.79462 0.80341 1.18478 1.20058 1.18673 1.19818 0.98421 0.91232 1.37710 0.89755 1.17778 0.90373 0.92148 0.87143 1.20716 1.04623 0.92653 1.07878 1.20368 0.92931 0.97139 0.93713 1.18924 1.04510 0.91108 1.14328 1.18599 0.78730 0.89585 0.76617 1.90625 1.66656 1.31755 1.56974 1.45896 1.31708 1.09054 1.52697 1.21189 0.92873 0.87565 0.97426 1.22813 0.93953 0.99001 0.98534 1.23024 0.95554 1.00607 0.98243 1.22839 0.96740 0.99102 0.99329 1.22865 0.95875 0.96962 1.01246 1.20473 0.97367 0.92587 0.97755 1.20972 0.99968 0.96883 1.01961 0.90195 0.88397 0.88127 0.76822 0.92174 0.92100 0.88758 0.89892 0.91335 0.90300 0.91531 0.91397 0.89856 0.89359 0.86215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.52 10.95 55.56 0.61 -17.91 16 2 C 0.07 1.75 5.14 -17.31 -0.09 1.66 16 3 Si 0.91 17.27 29.60 -169.99 -5.03 12.24 16 4 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 5 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 6 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 7 C -0.44 -11.10 9.04 -37.75 -0.34 -11.44 16 8 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 9 C 0.13 3.30 5.58 -106.80 -0.60 2.71 16 10 C -0.24 -5.86 9.73 -39.27 -0.38 -6.24 16 11 C -0.02 -0.53 9.52 -39.61 -0.38 -0.91 16 12 C -0.28 -6.61 5.89 -104.73 -0.62 -7.22 16 13 C 0.57 12.44 7.76 -12.42 -0.10 12.34 16 14 O -0.58 -14.14 16.32 5.29 0.09 -14.06 16 15 N -0.74 -12.67 5.50 -61.31 -0.34 -13.01 16 16 C 0.13 1.91 5.50 -4.04 -0.02 1.89 16 17 C -0.12 -1.34 3.75 -89.81 -0.34 -1.68 16 18 C -0.14 -1.38 7.65 -25.83 -0.20 -1.58 16 19 C -0.14 -1.21 8.09 -25.82 -0.21 -1.42 16 20 C -0.13 -1.19 7.65 -25.92 -0.20 -1.39 16 21 C -0.06 -1.40 9.47 -39.61 -0.38 -1.78 16 22 C -0.18 -4.40 8.64 -39.27 -0.34 -4.74 16 23 H 0.29 6.20 8.29 -40.82 -0.34 5.86 16 24 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 25 H 0.10 2.34 7.63 -52.49 -0.40 1.94 16 26 H 0.40 6.07 6.47 -40.82 -0.26 5.81 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.92 7.87 -51.93 -0.41 0.51 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.08 0.88 7.92 -51.93 -0.41 0.47 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.75 8.10 -51.93 -0.42 0.32 16 36 H 0.09 1.67 6.37 -52.49 -0.33 1.34 16 37 H 0.12 2.97 6.16 -52.49 -0.32 2.65 16 LS Contribution 310.73 15.07 4.68 4.68 Total: -1.00 -28.27 310.73 -9.24 -37.51 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -5.07 Total: 10.34 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: -4.18 Total: -19.80 kcal Atomic # 7 Polarization: -31.19 SS G_CDS: 0.27 Total: -30.91 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.09 Total: -14.06 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.27 -9.24 -37.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332438551.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.616 kcal (2) G-P(sol) polarization free energy of solvation -28.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds