Wall clock time and date at job start Sun Mar 29 2020 23:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86808 * 119.99881 * 2 1 4 4 H 1.48495 * 109.47228 * 240.00244 * 3 2 1 5 5 H 1.48500 * 109.46948 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46818 * 119.99979 * 3 2 1 7 7 C 1.40227 * 120.00501 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00234 * 197.86852 * 7 2 1 9 9 C 1.41111 * 119.99666 * 17.85883 * 7 2 1 10 10 C 1.40881 * 120.10299 * 204.63431 * 9 7 2 11 11 C 1.36320 * 119.89411 * 180.02562 * 10 9 7 12 12 C 1.40017 * 120.10465 * 0.02562 * 11 10 9 13 13 C 1.47642 * 119.89501 * 179.97438 * 12 11 10 14 14 O 1.21584 * 120.00178 * 0.02562 * 13 12 11 15 15 N 1.34781 * 119.99554 * 180.02562 * 13 12 11 16 16 C 1.46501 * 119.99496 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.46927 * 179.97438 * 16 15 13 18 18 C 1.53783 * 113.61687 * 274.13641 * 17 16 15 19 19 C 1.53955 * 87.02003 * 220.04850 * 18 17 16 20 20 C 1.53781 * 113.61232 * 176.52783 * 17 16 15 21 21 C 1.40016 * 120.20767 * 0.25865 * 12 11 10 22 22 C 1.36316 * 120.10714 * 359.43285 * 21 12 11 23 23 H 0.96998 * 120.00197 * 0.02562 * 1 2 3 24 24 H 1.08001 * 120.05574 * 0.02562 * 10 9 7 25 25 H 1.08000 * 119.95146 * 179.97438 * 11 10 9 26 26 H 0.96994 * 120.00274 * 359.97438 * 15 13 12 27 27 H 1.09000 * 109.47124 * 300.00220 * 16 15 13 28 28 H 1.08998 * 109.47160 * 60.00091 * 16 15 13 29 29 H 1.09000 * 112.84658 * 45.34006 * 17 16 15 30 30 H 1.08998 * 113.61004 * 334.57115 * 18 17 16 31 31 H 1.09001 * 113.60855 * 105.47084 * 18 17 16 32 32 H 1.08997 * 113.53867 * 270.81503 * 19 18 17 33 33 H 1.08994 * 113.74154 * 139.94168 * 19 18 17 34 34 H 1.08997 * 113.61447 * 254.52893 * 20 17 16 35 35 H 1.08993 * 113.61819 * 25.35315 * 20 17 16 36 36 H 1.08000 * 119.94532 * 179.72883 * 21 12 11 37 37 H 1.07995 * 120.05570 * 180.25331 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0941 1.6966 -1.2125 5 1 1.2754 2.7465 0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0076 -1.2143 -0.0005 8 1 3.0485 -1.2370 0.2864 9 6 1.3531 -2.4068 -0.3759 10 6 1.8268 -3.6494 0.0893 11 6 1.1915 -4.7987 -0.2763 12 6 0.0703 -4.7457 -1.1133 13 6 -0.6138 -5.9935 -1.5069 14 8 -0.2037 -7.0648 -1.1040 15 7 -1.6930 -5.9448 -2.3129 16 6 -2.3715 -7.1830 -2.7039 17 6 -3.5560 -6.8501 -3.6132 18 6 -4.8462 -6.5148 -2.8465 19 6 -5.5988 -7.3201 -3.9213 20 6 -4.2881 -8.0912 -4.1503 21 6 -0.4006 -3.5136 -1.5829 22 6 0.2243 -2.3585 -1.2176 23 1 -0.4850 0.8400 -0.0004 24 1 2.6918 -3.6913 0.7346 25 1 1.5541 -5.7518 0.0794 26 1 -2.0204 -5.0902 -2.6340 27 1 -1.6728 -7.8272 -3.2377 28 1 -2.7313 -7.6971 -1.8127 29 1 -3.3054 -6.1228 -4.3855 30 1 -4.8926 -6.9619 -1.8535 31 1 -5.0897 -5.4524 -2.8453 32 1 -5.9080 -6.7207 -4.7775 33 1 -6.4045 -7.9371 -3.5234 34 1 -4.0819 -8.2996 -5.2001 35 1 -4.1806 -8.9705 -3.5153 36 1 -1.2632 -3.4780 -2.2319 37 1 -0.1421 -1.4083 -1.5771 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332438551.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:17 Heat of formation + Delta-G solvation = -31.864198 kcal Electronic energy + Delta-G solvation = -18262.467340 eV Core-core repulsion = 15389.460933 eV Total energy + Delta-G solvation = -2873.006406 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.89441 -39.68142 -38.76922 -35.67209 -35.35321 -32.15695 -31.30459 -29.41578 -27.40980 -26.46937 -24.20637 -23.21470 -22.67516 -21.37718 -20.21300 -19.36787 -18.47958 -17.31613 -16.97032 -16.45199 -15.94246 -15.77020 -15.59764 -15.08788 -14.94659 -14.42708 -14.33569 -13.89305 -13.66876 -13.32076 -13.20794 -12.87358 -12.84383 -12.68758 -12.54140 -12.35158 -11.79311 -11.51293 -11.37022 -11.31345 -11.14432 -11.10690 -10.65063 -10.04411 -9.57781 -9.40554 -8.79306 -6.48545 0.44250 1.14623 1.39384 1.44941 1.52726 2.12374 2.18327 2.41536 2.78756 3.66693 3.70381 3.72400 3.82351 3.99927 4.25197 4.31521 4.36521 4.44127 4.55665 4.74556 4.88295 4.88742 4.91953 4.99488 5.03136 5.11719 5.13019 5.15722 5.29764 5.32839 5.55144 5.58713 5.65925 5.82173 5.94463 5.99073 6.22452 6.53496 6.72306 6.76922 6.88834 7.44637 8.15834 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.031118 B = 0.003985 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.587941 B = 7024.412215 C = 7768.138400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.039 3.961 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.259 1.259 7 C -0.475 4.475 8 H 0.085 0.915 9 C 0.102 3.898 10 C -0.254 4.254 11 C -0.034 4.034 12 C -0.296 4.296 13 C 0.568 3.432 14 O -0.610 6.610 15 N -0.723 5.723 16 C 0.132 3.868 17 C -0.122 4.122 18 C -0.142 4.142 19 C -0.133 4.133 20 C -0.128 4.128 21 C -0.053 4.053 22 C -0.198 4.198 23 H 0.297 0.703 24 H 0.104 0.896 25 H 0.101 0.899 26 H 0.407 0.593 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.124 0.876 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.364 -4.006 -7.961 12.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.181 4.181 3 Si 0.808 3.192 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.183 1.183 7 C -0.502 4.502 8 H 0.104 0.896 9 C 0.099 3.901 10 C -0.273 4.273 11 C -0.053 4.053 12 C -0.300 4.300 13 C 0.362 3.638 14 O -0.495 6.495 15 N -0.374 5.374 16 C 0.009 3.991 17 C -0.141 4.141 18 C -0.179 4.179 19 C -0.170 4.170 20 C -0.166 4.166 21 C -0.072 4.072 22 C -0.217 4.217 23 H 0.109 0.891 24 H 0.122 0.878 25 H 0.120 0.880 26 H 0.244 0.756 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.122 0.878 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.142 0.858 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.346 -4.623 -7.685 12.953 hybrid contribution 0.398 0.911 0.257 1.027 sum -8.948 -3.712 -7.428 12.207 Atomic orbital electron populations 1.69752 1.09234 1.31729 1.31359 1.26925 0.95550 1.04802 0.90776 0.85152 0.78855 0.74942 0.80279 1.18219 1.18711 1.18339 1.20107 0.98809 0.92270 1.39013 0.89643 1.18132 0.91267 0.92828 0.87905 1.20856 1.05219 0.92755 1.08482 1.20514 0.93544 0.97030 0.94193 1.19206 1.04444 0.92268 1.14078 1.18456 0.79695 0.88488 0.77194 1.90604 1.67881 1.32518 1.58463 1.45780 1.30092 1.10755 1.50815 1.21382 0.93807 0.86161 0.97784 1.22847 0.92511 1.00486 0.98222 1.23053 0.95520 1.01023 0.98344 1.22814 0.96549 0.98713 0.98968 1.22879 0.95661 0.96193 1.01859 1.20723 0.97774 0.91446 0.97248 1.21019 1.00539 0.97412 1.02764 0.89124 0.87789 0.88046 0.75578 0.92758 0.92923 0.87804 0.90744 0.91133 0.89131 0.90660 0.90208 0.89914 0.85841 0.86723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.97 10.95 21.87 0.24 -37.73 16 2 C 0.04 1.79 5.14 85.35 0.44 2.23 16 3 Si 0.99 34.61 29.60 68.60 2.03 36.64 16 4 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 5 H -0.26 -8.60 7.11 99.48 0.71 -7.90 16 6 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 7 C -0.47 -24.06 9.04 23.46 0.21 -23.84 16 8 H 0.09 4.14 7.91 -2.92 -0.02 4.12 16 9 C 0.10 5.33 5.58 -21.28 -0.12 5.21 16 10 C -0.25 -12.76 9.73 22.47 0.22 -12.55 16 11 C -0.03 -1.65 9.52 22.25 0.21 -1.43 16 12 C -0.30 -13.76 5.89 -19.93 -0.12 -13.88 16 13 C 0.57 24.61 7.76 86.73 0.67 25.29 16 14 O -0.61 -30.04 16.32 -3.98 -0.06 -30.10 16 15 N -0.72 -23.81 5.50 -466.15 -2.57 -26.38 16 16 C 0.13 3.63 5.50 86.38 0.47 4.10 16 17 C -0.12 -2.36 3.75 -10.27 -0.04 -2.40 16 18 C -0.14 -2.57 7.65 31.18 0.24 -2.33 16 19 C -0.13 -1.88 8.09 31.18 0.25 -1.63 16 20 C -0.13 -2.00 7.65 31.12 0.24 -1.76 16 21 C -0.05 -2.34 9.47 22.25 0.21 -2.13 16 22 C -0.20 -9.82 8.64 22.47 0.19 -9.63 16 23 H 0.30 12.58 8.29 -92.71 -0.77 11.81 16 24 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 25 H 0.10 4.85 7.63 -2.91 -0.02 4.83 16 26 H 0.41 11.62 6.47 -92.71 -0.60 11.02 16 27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.05 1.55 7.87 -2.39 -0.02 1.53 16 29 H 0.10 1.85 8.14 -2.39 -0.02 1.84 16 30 H 0.07 1.48 7.92 -2.39 -0.02 1.46 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 1.31 8.10 -2.39 -0.02 1.29 16 36 H 0.12 4.43 6.37 -2.91 -0.02 4.41 16 37 H 0.11 5.73 6.16 -2.91 -0.02 5.71 16 Total: -1.00 -61.01 310.73 3.20 -57.81 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: 0.47 Total: 34.52 kcal Atomic # 6 Polarization: -37.84 SS G_CDS: 3.09 Total: -34.75 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: -2.33 Total: -64.11 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.06 Total: -30.10 kcal Atomic # 14 Polarization: 34.61 SS G_CDS: 2.03 Total: 36.64 kcal Total: -61.01 3.20 -57.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332438551.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.942 kcal (2) G-P(sol) polarization free energy of solvation -61.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds