Wall clock time and date at job start Sun Mar 29 2020 23:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86807 * 120.00006 * 2 1 4 4 H 1.48504 * 109.47210 * 240.00255 * 3 2 1 5 5 H 1.48501 * 109.46628 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46900 * 119.99881 * 3 2 1 7 7 C 1.40052 * 120.00300 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00042 * 179.97438 * 7 2 1 9 9 C 1.46370 * 119.99698 * 359.97438 * 7 2 1 10 10 O 1.21693 * 120.00321 * 5.63782 * 9 7 2 11 11 N 1.34775 * 119.99894 * 185.64689 * 9 7 2 12 12 C 1.46924 * 120.63085 * 174.74098 * 11 9 7 13 13 C 1.53194 * 108.77790 * 233.58200 * 12 11 9 14 14 C 1.53043 * 109.31001 * 305.36595 * 13 12 11 15 15 C 1.53039 * 109.53950 * 61.36362 * 14 13 12 16 16 H 1.09003 * 109.50160 * 58.61835 * 15 14 13 17 17 C 1.50697 * 109.49965 * 178.68115 * 15 14 13 18 18 C 1.38233 * 120.00542 * 239.99504 * 17 15 14 19 19 C 1.38235 * 120.00364 * 179.97438 * 18 17 15 20 20 C 1.38234 * 119.99705 * 0.02562 * 19 18 17 21 21 C 1.38229 * 120.00297 * 0.25842 * 20 19 18 22 22 C 1.38237 * 119.99773 * 359.48788 * 21 20 19 23 23 C 1.46924 * 120.63157 * 354.71145 * 11 9 7 24 24 H 0.97003 * 119.99973 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.58816 * 113.79484 * 12 11 9 26 26 H 1.09000 * 109.58801 * 353.36930 * 12 11 9 27 27 H 1.08995 * 109.50208 * 185.41283 * 13 12 11 28 28 H 1.09001 * 109.52046 * 65.32786 * 13 12 11 29 29 H 1.08995 * 109.45918 * 301.33850 * 14 13 12 30 30 H 1.09004 * 109.45865 * 181.37862 * 14 13 12 31 31 H 1.08004 * 119.99466 * 0.02562 * 18 17 15 32 32 H 1.07994 * 119.99851 * 180.02562 * 19 18 17 33 33 H 1.08000 * 119.99513 * 179.97438 * 20 19 18 34 34 H 1.08003 * 120.00418 * 179.72500 * 21 20 19 35 35 H 1.08007 * 119.99994 * 180.25527 * 22 21 20 36 36 H 1.09001 * 109.58664 * 6.63050 * 23 11 9 37 37 H 1.09000 * 109.58594 * 246.20365 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6965 -1.2126 5 1 1.2756 2.7464 0.0006 6 1 3.0944 1.6964 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0626 -2.4830 -0.1036 11 7 1.9442 -3.6448 0.1138 12 6 1.2183 -4.9169 0.2310 13 6 1.7172 -5.6564 1.4764 14 6 3.2385 -5.8054 1.4011 15 6 3.8875 -4.4198 1.3697 16 1 3.6014 -3.8636 2.2623 17 6 5.3867 -4.5674 1.3282 18 6 6.1624 -4.0298 2.3381 19 6 7.5376 -4.1656 2.3003 20 6 8.1370 -4.8387 1.2522 21 6 7.3618 -5.3713 0.2393 22 6 5.9862 -5.2400 0.2798 23 6 3.4132 -3.6663 0.1230 24 1 -0.4850 0.8401 0.0004 25 1 1.4030 -5.5258 -0.6540 26 1 0.1503 -4.7208 0.3257 27 1 1.2568 -6.6433 1.5224 28 1 1.4509 -5.0888 2.3681 29 1 3.5054 -6.3521 0.4968 30 1 3.5934 -6.3528 2.2743 31 1 5.6940 -3.5042 3.1572 32 1 8.1435 -3.7459 3.0896 33 1 9.2114 -4.9445 1.2225 34 1 7.8304 -5.8934 -0.5819 35 1 5.3802 -5.6597 -0.5096 36 1 3.7935 -2.6451 0.1465 37 1 3.7768 -4.1733 -0.7708 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334371684.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:50:48 Heat of formation + Delta-G solvation = -41.659999 kcal Electronic energy + Delta-G solvation = -19221.873372 eV Core-core repulsion = 16348.442188 eV Total energy + Delta-G solvation = -2873.431184 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.88715 -39.59847 -37.58838 -34.75535 -33.86651 -33.03133 -31.70634 -29.80353 -28.47205 -25.83617 -24.60620 -23.48998 -22.71031 -21.32059 -20.33393 -18.51251 -17.85610 -17.52080 -16.45735 -16.09618 -15.97907 -15.77872 -15.26151 -15.09744 -14.56585 -14.39411 -14.24814 -14.06395 -13.58592 -13.48303 -13.38823 -12.96561 -12.74406 -12.53055 -12.36434 -12.15893 -12.03916 -11.88204 -11.62415 -11.42933 -11.27297 -10.93318 -9.84640 -9.72843 -9.53469 -9.03856 -8.30383 -6.85153 0.53646 0.59305 1.37271 1.40720 1.52153 2.22207 2.44405 2.81729 2.98401 3.56015 3.75546 3.90026 4.04020 4.16480 4.23994 4.24626 4.34011 4.39685 4.44156 4.66463 4.67831 4.73246 4.81404 4.94077 4.98533 5.06348 5.11301 5.19141 5.21900 5.27185 5.38800 5.44932 5.65776 5.70727 5.77264 5.85072 6.12455 6.21739 6.41373 6.86570 7.40524 8.45396 8.65861 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.018556 B = 0.006586 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.593356 B = 4250.272143 C = 5394.914178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.030 3.970 3 Si 0.991 3.009 4 H -0.254 1.254 5 H -0.272 1.272 6 H -0.254 1.254 7 C -0.570 4.570 8 H 0.090 0.910 9 C 0.541 3.459 10 O -0.633 6.633 11 N -0.645 5.645 12 C 0.114 3.886 13 C -0.123 4.123 14 C -0.095 4.095 15 C -0.057 4.057 16 H 0.061 0.939 17 C -0.078 4.078 18 C -0.132 4.132 19 C -0.124 4.124 20 C -0.131 4.131 21 C -0.123 4.123 22 C -0.123 4.123 23 C 0.134 3.866 24 H 0.274 0.726 25 H 0.061 0.939 26 H 0.047 0.953 27 H 0.095 0.905 28 H 0.044 0.956 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.119 0.881 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.126 0.874 36 H 0.073 0.927 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.878 -10.122 3.433 19.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.178 1.178 5 H -0.197 1.197 6 H -0.177 1.177 7 C -0.606 4.606 8 H 0.108 0.892 9 C 0.347 3.653 10 O -0.521 6.521 11 N -0.381 5.381 12 C -0.010 4.010 13 C -0.161 4.161 14 C -0.133 4.133 15 C -0.077 4.077 16 H 0.079 0.921 17 C -0.079 4.079 18 C -0.150 4.150 19 C -0.142 4.142 20 C -0.148 4.148 21 C -0.141 4.141 22 C -0.141 4.141 23 C 0.010 3.990 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.113 0.887 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.137 0.863 32 H 0.157 0.843 33 H 0.162 0.838 34 H 0.160 0.840 35 H 0.144 0.856 36 H 0.091 0.909 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 16.038 -10.050 3.370 19.225 hybrid contribution -0.345 0.870 0.004 0.936 sum 15.693 -9.180 3.374 18.491 Atomic orbital electron populations 1.70178 1.09492 1.28951 1.36537 1.26960 0.95480 1.04822 0.91203 0.85169 0.78376 0.75049 0.80367 1.17818 1.19707 1.17747 1.21456 0.94608 0.89955 1.54617 0.89238 1.18634 0.86520 0.84226 0.75938 1.90532 1.16657 1.87445 1.57418 1.48051 1.06310 1.05771 1.77942 1.21323 0.96422 0.85221 0.97997 1.21853 0.96944 1.00569 0.96731 1.21481 0.93624 0.95088 1.03069 1.20462 0.91287 0.97538 0.98409 0.92092 1.19785 0.94144 0.98277 0.95685 1.21267 0.94688 1.00264 0.98829 1.21390 0.94241 0.99175 0.99381 1.21459 1.00986 0.98127 0.94266 1.21426 0.93377 0.99858 0.99394 1.21173 0.95565 0.99439 0.97961 1.21563 0.79861 1.00989 0.96555 0.91586 0.92081 0.93419 0.88699 0.93731 0.90553 0.90465 0.86276 0.84309 0.83836 0.84009 0.85582 0.90868 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.32 11.84 21.84 0.26 -51.06 16 2 C 0.03 1.73 5.50 85.31 0.47 2.20 16 3 Si 0.99 41.71 29.56 68.60 2.03 43.74 16 4 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 6 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 7 C -0.57 -33.09 8.88 24.83 0.22 -32.87 16 8 H 0.09 4.70 5.64 -2.91 -0.02 4.69 16 9 C 0.54 32.52 7.61 86.36 0.66 33.17 16 10 O -0.63 -43.76 14.48 -4.33 -0.06 -43.83 16 11 N -0.64 -30.50 2.97 -823.99 -2.45 -32.94 16 12 C 0.11 4.58 6.42 86.36 0.55 5.14 16 13 C -0.12 -3.79 6.08 30.67 0.19 -3.60 16 14 C -0.10 -2.52 4.96 30.62 0.15 -2.37 16 15 C -0.06 -1.77 2.51 -11.46 -0.03 -1.80 16 16 H 0.06 2.11 7.88 -2.39 -0.02 2.09 16 17 C -0.08 -2.08 4.79 -19.87 -0.10 -2.17 16 18 C -0.13 -3.28 9.67 22.27 0.22 -3.07 16 19 C -0.12 -2.52 10.05 22.27 0.22 -2.30 16 20 C -0.13 -2.39 10.05 22.27 0.22 -2.16 16 21 C -0.12 -2.38 10.05 22.27 0.22 -2.15 16 22 C -0.12 -2.86 8.67 22.27 0.19 -2.67 16 23 C 0.13 5.08 5.52 86.36 0.48 5.56 16 24 H 0.27 15.52 8.29 -92.71 -0.77 14.75 16 25 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.05 2.24 7.04 -2.39 -0.02 2.23 16 27 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.08 1.81 7.44 -2.39 -0.02 1.79 16 30 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.12 2.88 7.95 -2.91 -0.02 2.85 16 32 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 33 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.13 2.71 7.09 -2.91 -0.02 2.69 16 36 H 0.07 3.06 5.30 -2.39 -0.01 3.04 16 37 H 0.06 2.06 7.23 -2.39 -0.02 2.04 16 Total: -1.00 -76.84 301.51 4.51 -72.34 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 1.06 Total: 20.85 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 3.67 Total: -9.09 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -2.19 Total: -84.00 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -0.06 Total: -43.83 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -76.84 4.51 -72.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334371684.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.676 kcal (2) G-P(sol) polarization free energy of solvation -76.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds