Wall clock time and date at job start Sun Mar 29 2020 23:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86803 * 119.99617 * 2 1 4 4 H 1.48503 * 109.46777 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47172 * 299.99897 * 3 2 1 6 6 H 1.48499 * 109.47118 * 60.00316 * 3 2 1 7 7 C 1.40044 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99910 * 179.97438 * 7 2 1 9 9 C 1.46370 * 120.00272 * 0.02562 * 7 2 1 10 10 O 1.21687 * 120.00007 * 5.76733 * 9 7 2 11 11 N 1.34780 * 120.00021 * 185.76858 * 9 7 2 12 12 C 1.47205 * 120.81589 * 354.87467 * 11 9 7 13 13 C 1.53184 * 108.85701 * 126.33370 * 12 11 9 14 14 C 1.53038 * 109.31285 * 54.65350 * 13 12 11 15 15 C 1.53045 * 109.53757 * 298.63203 * 14 13 12 16 16 H 1.09000 * 109.49916 * 301.41463 * 15 14 13 17 17 C 1.50696 * 109.52609 * 181.33219 * 15 14 13 18 18 C 1.38232 * 120.00203 * 299.87611 * 17 15 14 19 19 C 1.38237 * 119.99943 * 179.80796 * 18 17 15 20 20 C 1.38232 * 120.00127 * 0.42218 * 19 18 17 21 21 C 1.38233 * 119.99817 * 359.80495 * 20 19 18 22 22 C 1.38232 * 120.00205 * 0.02562 * 21 20 19 23 23 C 1.46926 * 120.62785 * 174.72542 * 11 9 7 24 24 H 0.97000 * 120.00154 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.53145 * 6.52575 * 12 11 9 26 26 H 1.08998 * 109.67177 * 246.22859 * 12 11 9 27 27 H 1.09001 * 109.50226 * 294.69834 * 13 12 11 28 28 H 1.09004 * 109.49758 * 174.60268 * 13 12 11 29 29 H 1.09005 * 109.46309 * 178.61757 * 14 13 12 30 30 H 1.08997 * 109.46198 * 58.65304 * 14 13 12 31 31 H 1.08005 * 119.99964 * 359.97438 * 18 17 15 32 32 H 1.08003 * 120.00000 * 180.20418 * 19 18 17 33 33 H 1.08004 * 120.00027 * 179.79532 * 20 19 18 34 34 H 1.08007 * 119.99781 * 179.97438 * 21 20 19 35 35 H 1.07997 * 120.00384 * 179.97438 * 22 21 20 36 36 H 1.09004 * 109.58427 * 113.82656 * 23 11 9 37 37 H 1.08998 * 109.59126 * 353.53752 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3465 -0.0006 5 1 1.8819 2.3965 -1.2125 6 1 1.8819 2.3965 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4804 0.0005 10 8 0.0630 -2.4832 -0.1058 11 7 1.9439 -3.6447 0.1184 12 6 3.4157 -3.6705 0.1355 13 6 3.8831 -4.4231 1.3852 14 6 3.2312 -5.8073 1.4159 15 6 1.7098 -5.6552 1.4845 16 1 1.4410 -5.0853 2.3740 17 6 1.0697 -7.0179 1.5477 18 6 1.2659 -7.9221 0.5206 19 6 0.6819 -9.1736 0.5805 20 6 -0.1054 -9.5178 1.6633 21 6 -0.3054 -8.6120 2.6882 22 6 0.2814 -7.3618 2.6300 23 6 1.2177 -4.9165 0.2359 24 1 -0.4850 0.8400 0.0004 25 1 3.7978 -2.6500 0.1591 26 1 3.7841 -4.1781 -0.7560 27 1 3.5938 -3.8649 2.2756 28 1 4.9674 -4.5321 1.3599 29 1 3.5812 -6.3543 2.2914 30 1 3.5009 -6.3559 0.5134 31 1 1.8777 -7.6516 -0.3274 32 1 0.8379 -9.8812 -0.2204 33 1 -0.5644 -10.4945 1.7085 34 1 -0.9209 -8.8808 3.5340 35 1 0.1248 -6.6539 3.4304 36 1 1.4050 -5.5271 -0.6474 37 1 0.1492 -4.7204 0.3248 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334371685.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:50:51 Heat of formation + Delta-G solvation = -21.775406 kcal Electronic energy + Delta-G solvation = -19103.664110 eV Core-core repulsion = 16231.095187 eV Total energy + Delta-G solvation = -2872.568924 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.64226 -38.05906 -35.79591 -32.78478 -32.55785 -30.98951 -30.80190 -28.82088 -26.38234 -24.20399 -23.30430 -22.49648 -21.20799 -20.04506 -18.67842 -16.93239 -16.31734 -15.73452 -15.13058 -14.92550 -14.39559 -14.10826 -13.83187 -13.68028 -13.42684 -13.09031 -12.94340 -12.58796 -12.25204 -11.97262 -11.56358 -11.31223 -11.21468 -11.09076 -10.97145 -10.63348 -10.52228 -10.34782 -10.20888 -10.03314 -9.75684 -8.86433 -8.81493 -8.56506 -7.56674 -7.18805 -6.19631 -4.64100 1.47921 1.50552 3.12403 3.20663 3.24622 3.89321 4.08657 4.52463 4.56633 4.92207 4.97400 5.07242 5.21021 5.28419 5.31806 5.51731 5.59055 5.64836 5.74706 5.78637 5.88473 6.04102 6.11099 6.11807 6.19346 6.25782 6.37857 6.49824 6.56479 6.57702 6.59274 6.65155 6.78174 6.90464 7.11914 7.46273 7.63856 8.14961 8.36694 9.02603 9.44945 10.58152 10.76796 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.035294 B = 0.004871 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.149137 B = 5747.157698 C = 6145.620615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.906 3.094 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.074 0.926 9 C 0.559 3.441 10 O -0.578 6.578 11 N -0.642 5.642 12 C 0.120 3.880 13 C -0.135 4.135 14 C -0.103 4.103 15 C -0.066 4.066 16 H 0.079 0.921 17 C -0.062 4.062 18 C -0.114 4.114 19 C -0.121 4.121 20 C -0.132 4.132 21 C -0.121 4.121 22 C -0.117 4.117 23 C 0.133 3.867 24 H 0.268 0.732 25 H 0.093 0.907 26 H 0.041 0.959 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.042 0.958 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.591 -13.939 3.714 15.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.092 0.908 9 C 0.365 3.635 10 O -0.460 6.460 11 N -0.380 5.380 12 C -0.004 4.004 13 C -0.174 4.174 14 C -0.140 4.140 15 C -0.086 4.086 16 H 0.097 0.903 17 C -0.062 4.062 18 C -0.132 4.132 19 C -0.139 4.139 20 C -0.150 4.150 21 C -0.139 4.139 22 C -0.135 4.135 23 C 0.008 3.992 24 H 0.078 0.922 25 H 0.111 0.889 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.060 0.940 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.731 -13.798 3.636 15.032 hybrid contribution 0.483 0.682 0.070 0.838 sum 5.213 -13.116 3.706 14.592 Atomic orbital electron populations 1.70029 1.07072 1.27168 1.35451 1.25733 0.94598 1.00293 0.92591 0.86345 0.80511 0.81867 0.78229 1.18732 1.20156 1.20179 1.21015 0.93610 0.89232 1.54218 0.90833 1.18262 0.86877 0.82203 0.76124 1.90592 1.14521 1.86101 1.54818 1.48255 1.04710 1.05852 1.79157 1.21475 0.82516 1.01419 0.95035 1.21954 0.99152 0.96027 1.00233 1.21507 0.94013 0.97262 1.01261 1.20637 0.95080 0.91794 1.01051 0.90306 1.19950 0.96594 0.95601 0.94073 1.21041 1.00200 0.93479 0.98499 1.21105 0.97983 0.96620 0.98198 1.21068 0.99734 0.99466 0.94775 1.21101 0.99952 0.94030 0.98789 1.21131 0.97511 0.96563 0.98265 1.21118 0.98489 0.85784 0.93791 0.92163 0.88914 0.94123 0.91619 0.91871 0.92606 0.92195 0.86094 0.86403 0.86563 0.86399 0.86153 0.94017 0.89914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.07 11.84 55.55 0.66 -22.41 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 3 Si 0.91 20.00 29.56 -169.99 -5.02 14.97 16 4 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.54 -15.23 8.88 -35.64 -0.32 -15.55 16 8 H 0.07 1.87 5.66 -52.49 -0.30 1.58 16 9 C 0.56 16.04 7.62 -12.99 -0.10 15.95 16 10 O -0.58 -18.91 14.48 5.20 0.08 -18.83 16 11 N -0.64 -14.72 2.98 -174.21 -0.52 -15.24 16 12 C 0.12 2.22 6.36 -3.56 -0.02 2.20 16 13 C -0.14 -2.06 6.08 -26.62 -0.16 -2.22 16 14 C -0.10 -1.47 4.96 -26.69 -0.13 -1.60 16 15 C -0.07 -1.08 2.51 -91.65 -0.23 -1.31 16 16 H 0.08 1.40 7.88 -51.93 -0.41 0.99 16 17 C -0.06 -0.91 4.79 -104.63 -0.50 -1.41 16 18 C -0.11 -1.53 8.67 -39.58 -0.34 -1.88 16 19 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 20 C -0.13 -1.51 10.05 -39.59 -0.40 -1.91 16 21 C -0.12 -1.46 10.05 -39.59 -0.40 -1.85 16 22 C -0.12 -1.61 9.67 -39.58 -0.38 -1.99 16 23 C 0.13 2.67 5.58 -3.71 -0.02 2.65 16 24 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 25 H 0.09 1.81 5.33 -51.93 -0.28 1.53 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.81 7.45 -51.93 -0.39 0.42 16 31 H 0.12 1.53 7.09 -52.48 -0.37 1.15 16 32 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 33 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 34 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 35 H 0.12 1.56 7.95 -52.49 -0.42 1.14 16 36 H 0.04 0.78 7.22 -51.93 -0.37 0.41 16 37 H 0.08 1.92 7.03 -51.93 -0.37 1.56 16 LS Contribution 301.58 15.07 4.54 4.54 Total: -1.00 -33.64 301.58 -8.76 -42.39 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -4.99 Total: 2.99 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -3.50 Total: -8.42 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.14 Total: -37.65 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.08 Total: -18.83 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.64 -8.76 -42.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334371685.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.619 kcal (2) G-P(sol) polarization free energy of solvation -33.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds