Wall clock time and date at job start Sun Mar 29 2020 23:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86803 * 119.99617 * 2 1 4 4 H 1.48503 * 109.46777 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47172 * 299.99897 * 3 2 1 6 6 H 1.48499 * 109.47118 * 60.00316 * 3 2 1 7 7 C 1.40044 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99910 * 179.97438 * 7 2 1 9 9 C 1.46370 * 120.00272 * 0.02562 * 7 2 1 10 10 O 1.21687 * 120.00007 * 5.76733 * 9 7 2 11 11 N 1.34780 * 120.00021 * 185.76858 * 9 7 2 12 12 C 1.47205 * 120.81589 * 354.87467 * 11 9 7 13 13 C 1.53184 * 108.85701 * 126.33370 * 12 11 9 14 14 C 1.53038 * 109.31285 * 54.65350 * 13 12 11 15 15 C 1.53045 * 109.53757 * 298.63203 * 14 13 12 16 16 H 1.09000 * 109.49916 * 301.41463 * 15 14 13 17 17 C 1.50696 * 109.52609 * 181.33219 * 15 14 13 18 18 C 1.38232 * 120.00203 * 299.87611 * 17 15 14 19 19 C 1.38237 * 119.99943 * 179.80796 * 18 17 15 20 20 C 1.38232 * 120.00127 * 0.42218 * 19 18 17 21 21 C 1.38233 * 119.99817 * 359.80495 * 20 19 18 22 22 C 1.38232 * 120.00205 * 0.02562 * 21 20 19 23 23 C 1.46926 * 120.62785 * 174.72542 * 11 9 7 24 24 H 0.97000 * 120.00154 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.53145 * 6.52575 * 12 11 9 26 26 H 1.08998 * 109.67177 * 246.22859 * 12 11 9 27 27 H 1.09001 * 109.50226 * 294.69834 * 13 12 11 28 28 H 1.09004 * 109.49758 * 174.60268 * 13 12 11 29 29 H 1.09005 * 109.46309 * 178.61757 * 14 13 12 30 30 H 1.08997 * 109.46198 * 58.65304 * 14 13 12 31 31 H 1.08005 * 119.99964 * 359.97438 * 18 17 15 32 32 H 1.08003 * 120.00000 * 180.20418 * 19 18 17 33 33 H 1.08004 * 120.00027 * 179.79532 * 20 19 18 34 34 H 1.08007 * 119.99781 * 179.97438 * 21 20 19 35 35 H 1.07997 * 120.00384 * 179.97438 * 22 21 20 36 36 H 1.09004 * 109.58427 * 113.82656 * 23 11 9 37 37 H 1.08998 * 109.59126 * 353.53752 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3465 -0.0006 5 1 1.8819 2.3965 -1.2125 6 1 1.8819 2.3965 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4804 0.0005 10 8 0.0630 -2.4832 -0.1058 11 7 1.9439 -3.6447 0.1184 12 6 3.4157 -3.6705 0.1355 13 6 3.8831 -4.4231 1.3852 14 6 3.2312 -5.8073 1.4159 15 6 1.7098 -5.6552 1.4845 16 1 1.4410 -5.0853 2.3740 17 6 1.0697 -7.0179 1.5477 18 6 1.2659 -7.9221 0.5206 19 6 0.6819 -9.1736 0.5805 20 6 -0.1054 -9.5178 1.6633 21 6 -0.3054 -8.6120 2.6882 22 6 0.2814 -7.3618 2.6300 23 6 1.2177 -4.9165 0.2359 24 1 -0.4850 0.8400 0.0004 25 1 3.7978 -2.6500 0.1591 26 1 3.7841 -4.1781 -0.7560 27 1 3.5938 -3.8649 2.2756 28 1 4.9674 -4.5321 1.3599 29 1 3.5812 -6.3543 2.2914 30 1 3.5009 -6.3559 0.5134 31 1 1.8777 -7.6516 -0.3274 32 1 0.8379 -9.8812 -0.2204 33 1 -0.5644 -10.4945 1.7085 34 1 -0.9209 -8.8808 3.5340 35 1 0.1248 -6.6539 3.4304 36 1 1.4050 -5.5271 -0.6474 37 1 0.1492 -4.7204 0.3248 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334371685.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:50:50 Heat of formation + Delta-G solvation = -42.259694 kcal Electronic energy + Delta-G solvation = -19104.552376 eV Core-core repulsion = 16231.095187 eV Total energy + Delta-G solvation = -2873.457189 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.90692 -39.60139 -37.59251 -34.69318 -34.23348 -32.51997 -31.77096 -30.16412 -28.34853 -25.83402 -24.63785 -23.52430 -22.52103 -21.61485 -20.27013 -18.50821 -17.84000 -17.56790 -16.35641 -16.25811 -16.01152 -15.70961 -15.29478 -15.04424 -14.63264 -14.43226 -14.21997 -14.13000 -13.61320 -13.42402 -13.37114 -12.96258 -12.78337 -12.71279 -12.34054 -12.04496 -11.99202 -11.85291 -11.67608 -11.42489 -11.28644 -10.95260 -9.80148 -9.79012 -9.61147 -9.04229 -8.29570 -6.84167 0.47641 0.52926 1.39455 1.39996 1.57843 2.23423 2.45482 2.80620 2.93803 3.56391 3.74858 3.84912 4.02656 4.17261 4.19593 4.23320 4.30480 4.36098 4.40470 4.66001 4.67366 4.69060 4.81615 4.95280 4.98955 5.07764 5.11516 5.14789 5.21048 5.22035 5.41179 5.48115 5.60924 5.64351 5.76114 5.80702 6.13869 6.16918 6.40036 6.87649 7.42912 8.46465 8.67289 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.035294 B = 0.004871 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.149137 B = 5747.157698 C = 6145.620615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.027 3.973 3 Si 0.997 3.003 4 H -0.243 1.243 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.568 4.568 8 H 0.096 0.904 9 C 0.539 3.461 10 O -0.636 6.636 11 N -0.646 5.646 12 C 0.113 3.887 13 C -0.127 4.127 14 C -0.096 4.096 15 C -0.053 4.053 16 H 0.054 0.946 17 C -0.082 4.082 18 C -0.124 4.124 19 C -0.122 4.122 20 C -0.130 4.130 21 C -0.124 4.124 22 C -0.137 4.137 23 C 0.135 3.865 24 H 0.273 0.727 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.102 0.898 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.127 0.873 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.140 0.860 35 H 0.116 0.884 36 H 0.058 0.942 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.036 -15.371 3.848 17.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.188 4.188 3 Si 0.816 3.184 4 H -0.165 1.165 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.604 4.604 8 H 0.114 0.886 9 C 0.345 3.655 10 O -0.524 6.524 11 N -0.382 5.382 12 C -0.010 4.010 13 C -0.165 4.165 14 C -0.133 4.133 15 C -0.073 4.073 16 H 0.072 0.928 17 C -0.082 4.082 18 C -0.142 4.142 19 C -0.140 4.140 20 C -0.148 4.148 21 C -0.142 4.142 22 C -0.155 4.155 23 C 0.011 3.989 24 H 0.083 0.917 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.120 0.880 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.145 0.855 32 H 0.163 0.837 33 H 0.165 0.835 34 H 0.158 0.842 35 H 0.134 0.866 36 H 0.076 0.924 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.235 -15.287 3.780 17.330 hybrid contribution -0.326 0.991 0.014 1.043 sum 6.909 -14.297 3.794 16.325 Atomic orbital electron populations 1.70214 1.09675 1.28810 1.36805 1.27036 0.95486 1.05063 0.91172 0.84981 0.79568 0.75364 0.78457 1.16549 1.19485 1.19413 1.21549 0.94877 0.89653 1.54323 0.88590 1.18729 0.86529 0.84305 0.75938 1.90536 1.16924 1.87465 1.57428 1.48149 1.06827 1.05308 1.77878 1.21736 0.79521 1.01796 0.97914 1.21904 1.01428 0.95727 0.97450 1.21490 0.91760 0.97025 1.03032 1.20420 0.97140 0.92195 0.97547 0.92780 1.19848 0.97970 0.94949 0.95472 1.21183 1.00778 0.94058 0.98216 1.21460 0.97159 0.96327 0.99035 1.21484 0.98856 1.00490 0.93944 1.21405 0.99627 0.93280 0.99878 1.21268 0.98177 0.97692 0.98340 1.21170 0.95891 0.85203 0.96626 0.91683 0.90077 0.91837 0.93296 0.88010 0.90511 0.90542 0.85488 0.83703 0.83523 0.84171 0.86602 0.92421 0.94397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -51.65 11.84 21.83 0.26 -51.39 16 2 C 0.03 1.53 5.50 85.30 0.47 2.00 16 3 Si 1.00 41.22 29.56 68.60 2.03 43.25 16 4 H -0.24 -9.12 7.11 99.48 0.71 -8.41 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 6 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.57 -32.55 8.88 24.83 0.22 -32.33 16 8 H 0.10 4.88 5.66 -2.91 -0.02 4.86 16 9 C 0.54 32.45 7.62 86.36 0.66 33.11 16 10 O -0.64 -44.48 14.48 -4.31 -0.06 -44.54 16 11 N -0.65 -30.57 2.98 -823.29 -2.46 -33.02 16 12 C 0.11 4.09 6.36 86.31 0.55 4.64 16 13 C -0.13 -3.61 6.08 30.67 0.19 -3.42 16 14 C -0.10 -2.54 4.96 30.62 0.15 -2.39 16 15 C -0.05 -1.78 2.51 -11.46 -0.03 -1.81 16 16 H 0.05 2.03 7.88 -2.39 -0.02 2.01 16 17 C -0.08 -2.39 4.79 -19.87 -0.10 -2.49 16 18 C -0.12 -3.15 8.67 22.27 0.19 -2.96 16 19 C -0.12 -2.57 10.05 22.27 0.22 -2.34 16 20 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 21 C -0.12 -2.78 10.05 22.27 0.22 -2.56 16 22 C -0.14 -3.77 9.67 22.27 0.22 -3.55 16 23 C 0.13 5.67 5.58 86.36 0.48 6.16 16 24 H 0.27 15.45 8.29 -92.71 -0.77 14.68 16 25 H 0.08 3.10 5.33 -2.39 -0.01 3.09 16 26 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 29 H 0.08 1.77 8.14 -2.38 -0.02 1.76 16 30 H 0.08 1.81 7.45 -2.39 -0.02 1.79 16 31 H 0.13 2.97 7.09 -2.91 -0.02 2.95 16 32 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 33 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 35 H 0.12 3.15 7.95 -2.91 -0.02 3.13 16 36 H 0.06 2.20 7.22 -2.39 -0.02 2.18 16 37 H 0.04 1.91 7.03 -2.39 -0.02 1.89 16 Total: -1.00 -78.42 301.58 4.50 -73.92 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 1.06 Total: 22.09 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 3.67 Total: -10.31 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -2.20 Total: -84.41 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -0.06 Total: -44.54 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -78.42 4.50 -73.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334371685.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.664 kcal (2) G-P(sol) polarization free energy of solvation -78.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds