Wall clock time and date at job start Sun Mar 29 2020 23:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99789 * 2 1 4 4 H 1.48496 * 109.46940 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47083 * 299.99754 * 3 2 1 6 6 H 1.48501 * 109.47149 * 59.99640 * 3 2 1 7 7 C 1.37877 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99470 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00199 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.46815 * 179.97438 * 9 7 2 11 11 C 1.46447 * 110.99996 * 293.95719 * 10 9 7 12 12 C 1.50477 * 111.40973 * 291.49978 * 11 10 9 13 13 C 1.38651 * 119.06225 * 158.84859 * 12 11 10 14 14 C 1.37973 * 120.33890 * 179.60978 * 13 12 11 15 15 C 1.38763 * 120.00580 * 0.02562 * 14 13 12 16 16 O 1.35905 * 120.15789 * 180.13135 * 15 14 13 17 17 C 1.38688 * 119.68646 * 0.17516 * 15 14 13 18 18 C 1.38149 * 120.03203 * 359.91416 * 17 15 14 19 19 C 1.50779 * 119.71992 * 179.83510 * 18 17 15 20 20 C 1.52748 * 117.92034 * 312.73805 * 19 18 17 21 21 C 1.52666 * 118.05149 * 21.89099 * 19 18 17 22 22 C 1.47343 * 111.00069 * 169.95078 * 10 9 7 23 23 H 0.97002 * 120.00366 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46889 * 60.00366 * 9 7 2 25 25 H 1.08994 * 109.47780 * 300.00192 * 9 7 2 26 26 H 1.09002 * 109.08940 * 171.00530 * 11 10 9 27 27 H 1.08997 * 109.09548 * 51.99478 * 11 10 9 28 28 H 1.07997 * 119.82750 * 359.62233 * 13 12 11 29 29 H 1.07993 * 119.99607 * 180.02562 * 14 13 12 30 30 H 0.96695 * 114.00239 * 89.99750 * 16 15 14 31 31 H 1.07994 * 119.98473 * 179.97438 * 17 15 14 32 32 H 1.08994 * 117.50787 * 0.56714 * 20 19 18 33 33 H 1.09000 * 117.50449 * 215.49245 * 20 19 18 34 34 H 1.08999 * 117.50525 * 144.71073 * 21 19 18 35 35 H 1.09001 * 117.53093 * 359.64516 * 21 19 18 36 36 H 1.09005 * 109.82069 * 297.47035 * 22 10 9 37 37 H 1.08993 * 109.82883 * 176.54202 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0017 10 7 2.2057 -3.6157 0.0015 11 6 2.9678 -3.6544 -1.2485 12 6 2.0930 -4.0304 -2.4137 13 6 2.5002 -3.6977 -3.6966 14 6 1.7225 -4.0368 -4.7847 15 6 0.5257 -4.7138 -4.5982 16 8 -0.2415 -5.0517 -5.6679 17 6 0.1157 -5.0432 -3.3149 18 6 0.8980 -4.6993 -2.2294 19 6 0.4436 -5.0577 -0.8371 20 6 -1.0023 -4.7474 -0.4545 21 6 -0.5619 -6.1957 -0.6807 22 6 1.5196 -4.8971 0.2426 23 1 -0.4851 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6247 -2.5564 0.8919 26 1 3.7702 -4.3861 -1.1544 27 1 3.4025 -2.6718 -1.4317 28 1 3.4311 -3.1706 -3.8450 29 1 2.0453 -3.7752 -5.7815 30 1 -0.0370 -5.9205 -6.0398 31 1 -0.8151 -5.5698 -3.1642 32 1 -1.6367 -4.2897 -1.2135 33 1 -1.1954 -4.4343 0.5715 34 1 -0.4657 -6.8354 0.1966 35 1 -0.9075 -6.6910 -1.5881 36 1 1.0550 -4.8878 1.2286 37 1 2.2346 -5.7173 0.1777 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334693908.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:31 Heat of formation + Delta-G solvation = 14.443397 kcal Electronic energy + Delta-G solvation = -19735.738324 eV Core-core repulsion = 16864.739966 eV Total energy + Delta-G solvation = -2870.998358 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.40459 -38.23883 -36.05258 -35.38716 -32.52066 -30.32711 -29.86415 -27.76242 -26.34281 -23.81963 -22.93210 -22.27215 -21.62977 -20.48219 -18.96335 -17.45653 -16.51462 -15.77826 -15.68335 -15.12186 -14.66609 -14.37900 -14.05635 -13.81003 -13.52577 -13.22082 -12.74860 -12.18315 -11.99363 -11.80067 -11.70576 -11.29353 -11.14657 -11.08303 -10.79713 -10.72141 -10.52165 -10.37525 -10.05155 -9.89309 -9.66673 -9.14889 -8.40813 -8.38793 -7.91206 -7.29286 -5.98781 -3.99671 1.54138 1.62964 3.32434 3.39902 3.43874 3.77147 4.24971 4.40516 4.45616 4.85798 5.01117 5.05599 5.13593 5.30157 5.31316 5.37118 5.41560 5.69089 5.76550 5.86410 6.02040 6.04844 6.14023 6.15618 6.23631 6.28330 6.41414 6.43122 6.51135 6.68667 6.72040 7.02758 7.14045 7.29256 7.49947 7.80399 7.81271 8.09223 8.21086 8.55763 9.07400 9.63755 11.11881 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.018665 B = 0.007539 C = 0.006512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.791252 B = 3712.896886 C = 4298.701916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.062 0.938 9 C 0.192 3.808 10 N -0.526 5.526 11 C 0.097 3.903 12 C -0.092 4.092 13 C -0.099 4.099 14 C -0.150 4.150 15 C 0.090 3.910 16 O -0.500 6.500 17 C -0.144 4.144 18 C -0.017 4.017 19 C -0.118 4.118 20 C -0.148 4.148 21 C -0.174 4.174 22 C 0.091 3.909 23 H 0.259 0.741 24 H 0.006 0.994 25 H 0.027 0.973 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.382 0.618 31 H 0.122 0.878 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.740 -12.802 -6.133 14.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.547 4.547 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.247 5.247 11 C -0.032 4.032 12 C -0.094 4.094 13 C -0.117 4.117 14 C -0.169 4.169 15 C 0.046 3.954 16 O -0.309 6.309 17 C -0.162 4.162 18 C -0.017 4.017 19 C -0.119 4.119 20 C -0.185 4.185 21 C -0.212 4.212 22 C -0.038 4.038 23 H 0.069 0.931 24 H 0.024 0.976 25 H 0.045 0.955 26 H 0.087 0.913 27 H 0.115 0.885 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.236 0.764 31 H 0.140 0.860 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.682 -12.015 -5.604 13.364 hybrid contribution -0.214 0.487 -0.957 1.095 sum 1.468 -11.528 -6.561 13.346 Atomic orbital electron populations 1.69971 1.05985 1.26487 1.51026 1.24958 0.94823 0.99146 0.95537 0.86512 0.80114 0.83751 0.77476 1.19671 1.21192 1.21051 1.21211 0.93407 0.90148 1.49974 0.91992 1.19755 0.90147 0.86703 0.96642 1.62560 1.28236 1.03012 1.30851 1.20985 0.94633 1.02163 0.85371 1.20678 0.95920 0.96375 0.96402 1.20922 0.99849 0.99405 0.91541 1.21246 0.94428 1.01787 0.99403 1.18297 0.90972 0.99984 0.86179 1.84851 1.60433 1.39863 1.45769 1.21100 1.00459 1.02982 0.91703 1.18597 0.93780 0.96915 0.92440 1.20895 0.93039 1.03541 0.94468 1.23009 0.95588 0.96893 1.03020 1.23020 1.03697 0.91577 1.02868 1.21913 0.93018 0.93258 0.95580 0.93093 0.97622 0.95539 0.91270 0.88453 0.85646 0.85992 0.76390 0.85996 0.88909 0.88187 0.88618 0.89164 0.90604 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.51 -14.24 8.39 -34.44 -0.29 -14.53 16 8 H 0.06 1.71 7.14 -52.49 -0.37 1.33 16 9 C 0.19 4.95 3.78 -4.97 -0.02 4.93 16 10 N -0.53 -11.19 4.96 -237.49 -1.18 -12.37 16 11 C 0.10 1.87 5.40 -5.33 -0.03 1.84 16 12 C -0.09 -1.71 5.16 -104.60 -0.54 -2.25 16 13 C -0.10 -1.64 9.66 -39.53 -0.38 -2.03 16 14 C -0.15 -2.35 9.98 -39.48 -0.39 -2.74 16 15 C 0.09 1.43 6.71 -39.22 -0.26 1.17 16 16 O -0.50 -6.89 13.51 -19.44 -0.26 -7.15 16 17 C -0.14 -2.41 8.91 -39.45 -0.35 -2.76 16 18 C -0.02 -0.31 4.89 -104.64 -0.51 -0.82 16 19 C -0.12 -2.02 1.36 -155.78 -0.21 -2.23 16 20 C -0.15 -2.50 9.02 -26.83 -0.24 -2.74 16 21 C -0.17 -2.40 9.56 -26.87 -0.26 -2.66 16 22 C 0.09 1.62 5.73 -3.44 -0.02 1.60 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.01 0.17 5.96 -51.93 -0.31 -0.14 16 25 H 0.03 0.74 8.08 -51.93 -0.42 0.32 16 26 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.10 2.01 6.60 -51.93 -0.34 1.67 16 28 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.38 3.14 9.06 45.56 0.41 3.55 16 31 H 0.12 1.86 6.47 -52.49 -0.34 1.52 16 32 H 0.09 1.64 8.04 -51.93 -0.42 1.23 16 33 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.14 6.68 -51.93 -0.35 0.80 16 36 H 0.08 1.31 8.04 -51.93 -0.42 0.89 16 37 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 LS Contribution 299.67 15.07 4.52 4.52 Total: -1.00 -31.90 299.67 -9.04 -40.94 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -4.23 Total: 5.06 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -3.61 Total: -21.71 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: -0.44 Total: -38.44 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.26 Total: -7.15 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.90 -9.04 -40.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334693908.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.385 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds