Wall clock time and date at job start Sun Mar 29 2020 23:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99789 * 2 1 4 4 H 1.48496 * 109.46940 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47083 * 299.99754 * 3 2 1 6 6 H 1.48501 * 109.47149 * 59.99640 * 3 2 1 7 7 C 1.37877 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99470 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00199 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.46815 * 179.97438 * 9 7 2 11 11 C 1.46447 * 110.99996 * 293.95719 * 10 9 7 12 12 C 1.50477 * 111.40973 * 291.49978 * 11 10 9 13 13 C 1.38651 * 119.06225 * 158.84859 * 12 11 10 14 14 C 1.37973 * 120.33890 * 179.60978 * 13 12 11 15 15 C 1.38763 * 120.00580 * 0.02562 * 14 13 12 16 16 O 1.35905 * 120.15789 * 180.13135 * 15 14 13 17 17 C 1.38688 * 119.68646 * 0.17516 * 15 14 13 18 18 C 1.38149 * 120.03203 * 359.91416 * 17 15 14 19 19 C 1.50779 * 119.71992 * 179.83510 * 18 17 15 20 20 C 1.52748 * 117.92034 * 312.73805 * 19 18 17 21 21 C 1.52666 * 118.05149 * 21.89099 * 19 18 17 22 22 C 1.47343 * 111.00069 * 169.95078 * 10 9 7 23 23 H 0.97002 * 120.00366 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46889 * 60.00366 * 9 7 2 25 25 H 1.08994 * 109.47780 * 300.00192 * 9 7 2 26 26 H 1.09002 * 109.08940 * 171.00530 * 11 10 9 27 27 H 1.08997 * 109.09548 * 51.99478 * 11 10 9 28 28 H 1.07997 * 119.82750 * 359.62233 * 13 12 11 29 29 H 1.07993 * 119.99607 * 180.02562 * 14 13 12 30 30 H 0.96695 * 114.00239 * 89.99750 * 16 15 14 31 31 H 1.07994 * 119.98473 * 179.97438 * 17 15 14 32 32 H 1.08994 * 117.50787 * 0.56714 * 20 19 18 33 33 H 1.09000 * 117.50449 * 215.49245 * 20 19 18 34 34 H 1.08999 * 117.50525 * 144.71073 * 21 19 18 35 35 H 1.09001 * 117.53093 * 359.64516 * 21 19 18 36 36 H 1.09005 * 109.82069 * 297.47035 * 22 10 9 37 37 H 1.08993 * 109.82883 * 176.54202 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0017 10 7 2.2057 -3.6157 0.0015 11 6 2.9678 -3.6544 -1.2485 12 6 2.0930 -4.0304 -2.4137 13 6 2.5002 -3.6977 -3.6966 14 6 1.7225 -4.0368 -4.7847 15 6 0.5257 -4.7138 -4.5982 16 8 -0.2415 -5.0517 -5.6679 17 6 0.1157 -5.0432 -3.3149 18 6 0.8980 -4.6993 -2.2294 19 6 0.4436 -5.0577 -0.8371 20 6 -1.0023 -4.7474 -0.4545 21 6 -0.5619 -6.1957 -0.6807 22 6 1.5196 -4.8971 0.2426 23 1 -0.4851 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6247 -2.5564 0.8919 26 1 3.7702 -4.3861 -1.1544 27 1 3.4025 -2.6718 -1.4317 28 1 3.4311 -3.1706 -3.8450 29 1 2.0453 -3.7752 -5.7815 30 1 -0.0370 -5.9205 -6.0398 31 1 -0.8151 -5.5698 -3.1642 32 1 -1.6367 -4.2897 -1.2135 33 1 -1.1954 -4.4343 0.5715 34 1 -0.4657 -6.8354 0.1966 35 1 -0.9075 -6.6910 -1.5881 36 1 1.0550 -4.8878 1.2286 37 1 2.2346 -5.7173 0.1777 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334693908.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:30 Heat of formation + Delta-G solvation = -7.603175 kcal Electronic energy + Delta-G solvation = -19736.694335 eV Core-core repulsion = 16864.739966 eV Total energy + Delta-G solvation = -2871.954369 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.73577 -39.48075 -37.32788 -36.86507 -34.62436 -31.58600 -31.28193 -29.59209 -27.85606 -25.66198 -24.21523 -23.59214 -23.08007 -21.96356 -20.27667 -18.70720 -18.51254 -17.13865 -17.06419 -16.80417 -16.08508 -15.86685 -15.56757 -15.21200 -15.04019 -14.57124 -14.31565 -13.97062 -13.39261 -13.23477 -13.03307 -12.91769 -12.74066 -12.56013 -12.49229 -12.38698 -12.17322 -11.87069 -11.63955 -11.30832 -11.17968 -11.02884 -10.57710 -9.66042 -9.20507 -8.98509 -8.17085 -6.25905 0.27646 0.36188 1.39398 1.39960 1.53037 2.40793 2.53039 3.01149 3.15988 3.23129 3.44712 3.63649 3.75459 3.86996 3.99527 4.07933 4.15872 4.40125 4.51267 4.61245 4.69616 4.73242 4.77289 4.83389 4.97295 5.00837 5.01569 5.15332 5.20434 5.31674 5.35075 5.43853 5.48181 5.67130 5.69968 5.92067 6.09587 6.38072 6.64661 6.86446 6.91411 7.42814 8.93584 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.018665 B = 0.007539 C = 0.006512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.791252 B = 3712.896886 C = 4298.701916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.261 1.261 5 H -0.283 1.283 6 H -0.279 1.279 7 C -0.522 4.522 8 H 0.062 0.938 9 C 0.219 3.781 10 N -0.538 5.538 11 C 0.101 3.899 12 C -0.122 4.122 13 C -0.104 4.104 14 C -0.155 4.155 15 C 0.095 3.905 16 O -0.506 6.506 17 C -0.156 4.156 18 C -0.033 4.033 19 C -0.136 4.136 20 C -0.170 4.170 21 C -0.131 4.131 22 C 0.091 3.909 23 H 0.261 0.739 24 H -0.022 1.022 25 H -0.006 1.006 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.142 0.858 29 H 0.147 0.853 30 H 0.408 0.592 31 H 0.134 0.866 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.582 -13.872 -7.207 15.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.184 1.184 5 H -0.209 1.209 6 H -0.205 1.205 7 C -0.561 4.561 8 H 0.080 0.920 9 C 0.093 3.907 10 N -0.258 5.258 11 C -0.028 4.028 12 C -0.124 4.124 13 C -0.122 4.122 14 C -0.173 4.173 15 C 0.051 3.949 16 O -0.319 6.319 17 C -0.174 4.174 18 C -0.033 4.033 19 C -0.138 4.138 20 C -0.207 4.207 21 C -0.168 4.168 22 C -0.038 4.038 23 H 0.070 0.930 24 H -0.004 1.004 25 H 0.012 0.988 26 H 0.114 0.886 27 H 0.093 0.907 28 H 0.159 0.841 29 H 0.165 0.835 30 H 0.267 0.733 31 H 0.152 0.848 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.139 0.861 35 H 0.126 0.874 36 H 0.092 0.908 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.543 -13.128 -6.690 14.953 hybrid contribution -0.509 0.746 -0.686 1.134 sum 2.034 -12.382 -7.377 14.556 Atomic orbital electron populations 1.70108 1.07647 1.27432 1.52114 1.25851 0.95659 1.02946 0.95118 0.85436 0.79245 0.79069 0.77517 1.18448 1.20852 1.20497 1.21576 0.93603 0.91446 1.49462 0.91971 1.19226 0.89901 0.87964 0.93625 1.62424 1.27532 1.03405 1.32425 1.20918 0.95051 1.01796 0.84989 1.20724 0.96677 0.98133 0.96852 1.21165 1.00711 0.99148 0.91215 1.21525 0.94218 1.01314 1.00250 1.18406 0.90838 0.99153 0.86499 1.84781 1.60153 1.41954 1.44975 1.21263 1.00829 1.03501 0.91824 1.18804 0.93998 0.97280 0.93242 1.20904 0.92758 1.06168 0.93963 1.22924 0.95744 1.00141 1.01874 1.23119 0.99409 0.89896 1.04412 1.21989 0.93817 0.92138 0.95815 0.93029 1.00443 0.98781 0.88635 0.90673 0.84069 0.83526 0.73295 0.84845 0.90552 0.89323 0.86126 0.87397 0.90777 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.96 45.13 29.54 68.60 2.03 47.15 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 7 C -0.52 -29.91 8.39 25.60 0.21 -29.69 16 8 H 0.06 3.47 7.14 -2.91 -0.02 3.45 16 9 C 0.22 11.69 3.78 85.55 0.32 12.01 16 10 N -0.54 -23.15 4.96 -905.28 -4.49 -27.64 16 11 C 0.10 3.87 5.40 85.57 0.46 4.33 16 12 C -0.12 -4.51 5.16 -19.85 -0.10 -4.61 16 13 C -0.10 -3.36 9.66 22.31 0.22 -3.15 16 14 C -0.15 -4.55 9.98 22.33 0.22 -4.33 16 15 C 0.10 2.87 6.71 22.50 0.15 3.02 16 16 O -0.51 -12.59 13.51 -92.48 -1.25 -13.84 16 17 C -0.16 -5.03 8.91 22.36 0.20 -4.83 16 18 C -0.03 -1.18 4.89 -19.87 -0.10 -1.28 16 19 C -0.14 -4.63 1.36 -53.01 -0.07 -4.70 16 20 C -0.17 -5.82 9.02 30.53 0.28 -5.55 16 21 C -0.13 -3.36 9.56 30.50 0.29 -3.07 16 22 C 0.09 3.17 5.73 86.31 0.49 3.67 16 23 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 24 H -0.02 -1.30 5.96 -2.39 -0.01 -1.31 16 25 H -0.01 -0.35 8.08 -2.39 -0.02 -0.37 16 26 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 27 H 0.07 3.16 6.60 -2.39 -0.02 3.14 16 28 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 29 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 30 H 0.41 5.40 9.06 -74.06 -0.67 4.72 16 31 H 0.13 3.85 6.47 -2.91 -0.02 3.83 16 32 H 0.08 2.82 8.04 -2.39 -0.02 2.80 16 33 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 34 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.11 2.41 6.68 -2.39 -0.02 2.39 16 36 H 0.07 2.57 8.04 -2.38 -0.02 2.55 16 37 H 0.09 2.78 8.12 -2.39 -0.02 2.76 16 Total: -1.00 -69.88 299.67 0.03 -69.85 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.41 Total: 19.11 kcal Atomic # 6 Polarization: -40.64 SS G_CDS: 3.04 Total: -37.60 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -4.20 Total: -84.68 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -1.25 Total: -13.84 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -69.88 0.03 -69.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334693908.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.246 kcal (2) G-P(sol) polarization free energy of solvation -69.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds