Wall clock time and date at job start Mon Mar 30 2020 00:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38261 * 119.73810 * 2 1 4 4 C 1.37925 * 120.09881 * 179.97438 * 3 2 1 5 5 C 1.39499 * 119.76785 * 359.97438 * 4 3 2 6 6 C 1.47847 * 120.04260 * 180.02562 * 5 4 3 7 7 O 1.21552 * 120.00134 * 179.97438 * 6 5 4 8 8 N 1.34782 * 119.99781 * 359.97438 * 6 5 4 9 9 C 1.46496 * 119.99640 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.46948 * 180.02562 * 9 8 6 11 11 H 1.07996 * 119.99971 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00153 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00144 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99848 * 359.97438 * 12 10 9 15 15 H 1.48491 * 109.47309 * 89.99844 * 14 12 10 16 16 H 1.48497 * 109.47080 * 210.00177 * 14 12 10 17 17 H 1.48498 * 109.46959 * 329.99720 * 14 12 10 18 18 C 1.39771 * 119.91487 * 359.97438 * 5 4 3 19 19 C 1.37970 * 119.76230 * 0.02562 * 18 5 4 20 20 C 1.51402 * 109.76163 * 179.97438 * 19 18 5 21 21 C 1.54347 * 105.16807 * 17.18853 * 20 19 18 22 22 C 1.51356 * 130.41106 * 180.02562 * 18 5 4 23 23 H 1.08997 * 109.47230 * 270.02627 * 1 2 3 24 24 H 1.08995 * 109.46654 * 30.02949 * 1 2 3 25 25 H 1.09004 * 109.46684 * 150.02356 * 1 2 3 26 26 H 1.08005 * 119.94585 * 359.96759 * 3 2 1 27 27 H 1.07994 * 120.11902 * 179.97438 * 4 3 2 28 28 H 0.96997 * 120.00054 * 0.02562 * 8 6 5 29 29 H 1.09004 * 109.47524 * 299.99818 * 9 8 6 30 30 H 1.08995 * 109.47442 * 60.00402 * 9 8 6 31 31 H 0.96993 * 119.99667 * 180.02562 * 13 12 10 32 32 H 1.09007 * 110.30155 * 136.11080 * 20 19 18 33 33 H 1.08992 * 110.30627 * 258.26176 * 20 19 18 34 34 H 1.08996 * 110.83027 * 215.46077 * 21 20 19 35 35 H 1.09008 * 110.82633 * 91.89318 * 21 20 19 36 36 H 1.08997 * 110.30685 * 281.75520 * 22 18 5 37 37 H 1.09003 * 110.30476 * 43.90962 * 22 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.2005 0.0000 4 6 3.5721 1.2092 0.0005 5 6 4.2723 0.0027 0.0016 6 6 5.7507 0.0049 0.0028 7 8 6.3601 -1.0469 0.0042 8 7 6.4229 1.1732 0.0022 9 6 7.8878 1.1753 0.0040 10 6 8.3880 2.5969 0.0036 11 1 7.6850 3.4167 0.0018 12 6 9.7432 2.8510 0.0045 13 7 10.1797 4.0916 0.0036 14 14 10.9592 1.4330 0.0068 15 1 11.2826 1.0558 -1.3925 16 1 12.2012 1.8472 0.7075 17 1 10.3605 0.2686 0.7075 18 6 3.5743 -1.2083 0.0027 19 6 2.1946 -1.2036 0.0021 20 6 1.6779 -2.6267 0.0029 21 6 2.8776 -3.4918 0.4442 22 6 4.0829 -2.6339 0.0045 23 1 -0.3633 0.0005 1.0276 24 1 -0.3632 0.8897 -0.5143 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6477 2.1329 -0.0005 27 1 4.1081 2.1467 0.0001 28 1 5.9366 2.0125 0.0015 29 1 8.2510 0.6631 0.8950 30 1 8.2530 0.6612 -0.8850 31 1 11.1331 4.2702 0.0039 32 1 0.8560 -2.7303 0.7114 33 1 1.3537 -2.9120 -0.9978 34 1 2.8750 -4.4510 -0.0734 35 1 2.8766 -3.6333 1.5250 36 1 4.4065 -2.9213 -0.9959 37 1 4.9034 -2.7419 0.7139 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334800797.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:06:19 Heat of formation + Delta-G solvation = -29.174902 kcal Electronic energy + Delta-G solvation = -18680.332080 eV Core-core repulsion = 15807.442290 eV Total energy + Delta-G solvation = -2872.889790 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.47037 -38.44127 -35.85181 -34.28118 -33.08920 -32.24827 -29.07299 -28.41616 -27.97033 -26.37359 -22.85418 -21.99124 -21.29374 -20.45430 -19.50085 -17.48326 -16.32955 -16.08233 -15.57734 -14.89043 -14.71121 -14.48739 -14.38904 -13.78234 -13.68642 -13.29205 -12.86775 -12.78824 -12.40382 -12.36550 -12.27808 -11.93313 -11.67646 -11.26726 -11.13183 -11.11734 -10.95036 -10.85160 -10.76099 -9.96825 -9.49403 -9.19958 -8.78054 -8.59757 -8.50873 -8.09596 -6.21347 -4.23634 1.00294 1.38661 3.20616 3.27347 3.33765 3.42334 3.97593 4.06451 4.33785 4.37872 4.55503 4.80482 4.95561 5.00653 5.07302 5.14096 5.16207 5.26501 5.42652 5.48734 5.58699 5.68796 5.70113 5.75871 5.83859 5.94633 6.12203 6.18668 6.25342 6.37054 6.50462 6.60179 6.83013 6.95350 7.07412 7.22503 7.38784 8.14011 8.51143 8.74998 8.92360 9.38689 10.90626 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.032191 B = 0.004694 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.586824 B = 5963.524405 C = 6789.631575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.058 4.058 3 C -0.131 4.131 4 C -0.083 4.083 5 C -0.120 4.120 6 C 0.541 3.459 7 O -0.552 6.552 8 N -0.700 5.700 9 C 0.220 3.780 10 C -0.544 4.544 11 H 0.079 0.921 12 C 0.078 3.922 13 N -0.892 5.892 14 Si 0.877 3.123 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.261 1.261 18 C -0.032 4.032 19 C -0.114 4.114 20 C -0.076 4.076 21 C -0.123 4.123 22 C -0.080 4.080 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.128 0.872 27 H 0.132 0.868 28 H 0.395 0.605 29 H 0.026 0.974 30 H 0.022 0.978 31 H 0.268 0.732 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.655 -10.173 0.166 22.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.058 4.058 3 C -0.149 4.149 4 C -0.101 4.101 5 C -0.123 4.123 6 C 0.327 3.673 7 O -0.432 6.432 8 N -0.349 5.349 9 C 0.098 3.902 10 C -0.582 4.582 11 H 0.097 0.903 12 C -0.126 4.126 13 N -0.530 5.530 14 Si 0.703 3.297 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.185 1.185 18 C -0.033 4.033 19 C -0.114 4.114 20 C -0.113 4.113 21 C -0.161 4.161 22 C -0.117 4.117 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.146 0.854 27 H 0.149 0.851 28 H 0.230 0.770 29 H 0.044 0.956 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.996 -10.776 0.170 21.840 hybrid contribution 0.595 0.101 -0.051 0.606 sum -18.401 -10.675 0.118 21.274 Atomic orbital electron populations 1.20801 0.91314 1.02723 1.02294 1.19575 0.95849 0.91876 0.98489 1.20838 0.93863 0.97327 1.02874 1.21302 0.94394 0.97166 0.97272 1.19775 0.93615 0.92999 1.05959 1.18317 0.86665 0.84600 0.77675 1.90688 1.69825 1.31356 1.51376 1.46146 1.09440 1.07236 1.72029 1.19516 0.75456 0.98313 0.96879 1.21089 0.93271 0.90470 1.53360 0.90261 1.24789 0.98138 0.95809 0.93827 1.69881 1.14975 1.18665 1.49439 0.86812 0.80780 0.83025 0.79065 1.19828 1.20880 1.18481 1.20549 0.93366 0.94519 0.94837 1.20403 0.93753 0.94671 1.02614 1.21000 0.98327 0.90296 1.01717 1.22363 0.94147 0.98175 1.01395 1.21090 0.98151 0.89305 1.03147 0.91108 0.91466 0.91565 0.85417 0.85059 0.76987 0.95564 0.96014 0.92253 0.90930 0.90411 0.90607 0.91052 0.89919 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.86 36.01 0.35 -0.57 16 2 C -0.06 -0.66 5.89 -104.47 -0.62 -1.28 16 3 C -0.13 -1.57 9.67 -39.69 -0.38 -1.95 16 4 C -0.08 -1.17 9.54 -39.23 -0.37 -1.55 16 5 C -0.12 -2.03 5.88 -104.92 -0.62 -2.65 16 6 C 0.54 11.17 7.77 -12.33 -0.10 11.08 16 7 O -0.55 -12.86 14.70 5.32 0.08 -12.78 16 8 N -0.70 -14.94 5.50 -62.43 -0.34 -15.28 16 9 C 0.22 5.54 4.50 -5.19 -0.02 5.52 16 10 C -0.54 -15.11 9.83 -34.44 -0.34 -15.44 16 11 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 12 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 13 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 14 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 15 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 18 C -0.03 -0.49 6.03 -103.83 -0.63 -1.11 16 19 C -0.11 -1.45 6.00 -104.23 -0.63 -2.07 16 20 C -0.08 -0.75 6.09 -26.83 -0.16 -0.91 16 21 C -0.12 -1.26 7.08 -25.33 -0.18 -1.44 16 22 C -0.08 -1.13 5.58 -26.86 -0.15 -1.28 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 25 H 0.07 0.48 7.66 -51.93 -0.40 0.08 16 26 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 27 H 0.13 1.70 6.40 -52.49 -0.34 1.36 16 28 H 0.40 7.46 6.35 -40.82 -0.26 7.20 16 29 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 30 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 31 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 32 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.09 1.44 7.19 -51.93 -0.37 1.06 16 LS Contribution 305.06 15.07 4.60 4.60 Total: -1.00 -32.22 305.06 -8.59 -40.80 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.09 Total: 3.11 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -3.93 Total: -11.53 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.43 Total: -41.13 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.08 Total: -12.78 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.22 -8.59 -40.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334800797.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.629 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds