Wall clock time and date at job start Mon Mar 30 2020 00:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 115.56026 * 2 1 4 4 C 1.53000 * 117.50254 * 145.68830 * 2 1 3 5 5 C 1.53001 * 117.50051 * 214.31459 * 2 1 3 6 6 H 1.09001 * 117.49561 * 359.97438 * 5 2 1 7 7 C 1.50695 * 117.50387 * 145.01862 * 5 2 1 8 8 O 1.21286 * 119.99915 * 0.02562 * 7 5 2 9 9 N 1.34774 * 120.00550 * 180.02562 * 7 5 2 10 10 C 1.39117 * 120.00430 * 175.81006 * 9 7 5 11 11 C 1.38653 * 120.28333 * 34.54938 * 10 9 7 12 12 C 1.38226 * 120.03356 * 179.97438 * 11 10 9 13 13 C 1.38871 * 120.61374 * 0.04371 * 12 11 10 14 14 C 1.36461 * 120.57666 * 0.02562 * 13 12 11 15 15 C 1.40731 * 119.94296 * 359.65608 * 14 13 12 16 16 C 1.41081 * 120.29712 * 180.34563 * 15 14 13 17 17 H 1.08003 * 119.99494 * 214.97809 * 16 15 14 18 18 C 1.39954 * 119.99937 * 34.97553 * 16 15 14 19 19 N 1.30849 * 120.00247 * 355.65896 * 18 16 15 20 20 Si 1.86805 * 119.99657 * 175.65194 * 18 16 15 21 21 H 1.48509 * 109.46865 * 60.00625 * 20 18 16 22 22 H 1.48494 * 109.47119 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47544 * 300.00352 * 20 18 16 24 24 H 1.09000 * 109.47307 * 325.69880 * 1 2 3 25 25 H 1.08998 * 109.47462 * 85.70252 * 1 2 3 26 26 H 1.09004 * 109.47227 * 205.70317 * 1 2 3 27 27 H 1.08998 * 109.47096 * 154.30080 * 3 2 1 28 28 H 1.09007 * 109.46879 * 274.29698 * 3 2 1 29 29 H 1.08993 * 109.47282 * 34.29750 * 3 2 1 30 30 H 1.08996 * 117.50060 * 214.97709 * 4 2 1 31 31 H 1.08999 * 117.49279 * 0.02562 * 4 2 1 32 32 H 0.97005 * 119.99565 * 355.81794 * 9 7 5 33 33 H 1.08002 * 119.98081 * 359.97438 * 11 10 9 34 34 H 1.07995 * 119.69262 * 180.02562 * 12 11 10 35 35 H 1.07999 * 119.70398 * 179.97438 * 13 12 11 36 36 H 1.08005 * 120.02172 * 179.97438 * 14 13 12 37 37 H 0.97000 * 119.99590 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2365 -1.1209 0.7650 5 6 2.2364 -1.1209 -0.7651 6 1 1.6112 -1.8586 -1.2680 7 6 3.5292 -0.7811 -1.4609 8 8 3.9720 0.3464 -1.4009 9 7 4.1934 -1.7300 -2.1499 10 6 5.3398 -1.3970 -2.8642 11 6 6.2034 -0.4234 -2.3860 12 6 7.3413 -0.0969 -3.0996 13 6 7.6319 -0.7354 -4.2981 14 6 6.7986 -1.6963 -4.7926 15 6 5.6370 -2.0521 -4.0822 16 6 4.7741 -3.0496 -4.5829 17 1 3.7077 -2.9655 -4.4339 18 6 5.2999 -4.1480 -5.2727 19 7 6.5820 -4.2079 -5.5275 20 14 4.1715 -5.5286 -5.8294 21 1 3.1422 -4.9851 -6.7517 22 1 4.9681 -6.5661 -6.5322 23 1 3.5070 -6.1324 -4.6465 24 1 -0.3634 0.8489 0.5791 25 1 -0.3634 0.0770 -1.0247 26 1 -0.3634 -0.9260 0.4457 27 1 3.1822 1.3085 0.4456 28 1 2.2774 1.7413 -1.0249 29 1 1.5810 2.0744 0.5790 30 1 3.1715 -0.8751 1.2682 31 1 1.6112 -1.8586 1.2679 32 1 3.8720 -2.6453 -2.1479 33 1 5.9869 0.0801 -1.4554 34 1 8.0104 0.6620 -2.7218 35 1 8.5248 -0.4685 -4.8439 36 1 7.0331 -2.1868 -5.7258 37 1 6.9464 -4.9694 -6.0052 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336507704.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:23 Heat of formation + Delta-G solvation = 0.776473 kcal Electronic energy + Delta-G solvation = -19049.828847 eV Core-core repulsion = 16178.237847 eV Total energy + Delta-G solvation = -2871.591001 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.98983 -37.98490 -36.41590 -33.69449 -33.60003 -29.72974 -29.48441 -28.23642 -27.32377 -25.33264 -23.84400 -21.43287 -20.65092 -19.46930 -18.78295 -17.32349 -16.63600 -16.14341 -15.15851 -14.70271 -14.32901 -14.10338 -13.83573 -13.55791 -13.19025 -12.86662 -12.54698 -12.39960 -12.32343 -11.86484 -11.74959 -11.64636 -11.23100 -11.16961 -11.11518 -10.92675 -10.47189 -10.07464 -10.02784 -9.76644 -9.64514 -9.26465 -9.10517 -8.65524 -7.29212 -6.93503 -6.61012 -4.43637 2.60430 2.87899 3.03994 3.05461 3.20094 3.26559 3.86970 3.91360 4.00678 4.66914 4.75861 4.87690 5.01861 5.16126 5.47037 5.62856 5.65564 5.68618 5.76396 5.95038 6.04780 6.09905 6.15922 6.31789 6.33567 6.53242 6.58814 6.71272 6.98889 7.09792 7.22462 7.31596 7.68710 7.74739 8.02275 8.10579 8.15240 8.46535 8.59571 8.85309 8.88267 9.09408 10.23940 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.019319 B = 0.006448 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.037985 B = 4341.122607 C = 5566.610621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.096 4.096 3 C -0.101 4.101 4 C -0.151 4.151 5 C -0.183 4.183 6 H 0.119 0.881 7 C 0.527 3.473 8 O -0.536 6.536 9 N -0.635 5.635 10 C 0.025 3.975 11 C -0.094 4.094 12 C -0.216 4.216 13 C -0.121 4.121 14 C -0.139 4.139 15 C 0.095 3.905 16 C -0.470 4.470 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.808 5.808 20 Si 0.913 3.087 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.267 1.267 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.403 0.597 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.130 0.870 37 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.401 1.588 7.594 11.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.097 4.097 3 C -0.158 4.158 4 C -0.188 4.188 5 C -0.204 4.204 6 H 0.137 0.863 7 C 0.314 3.686 8 O -0.414 6.414 9 N -0.276 5.276 10 C -0.069 4.069 11 C -0.114 4.114 12 C -0.236 4.236 13 C -0.139 4.139 14 C -0.159 4.159 15 C 0.091 3.909 16 C -0.501 4.501 17 H 0.092 0.908 18 C -0.142 4.142 19 N -0.435 5.435 20 Si 0.738 3.262 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.191 1.191 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.238 0.762 33 H 0.127 0.873 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.148 0.852 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.944 2.214 7.513 11.156 hybrid contribution -0.527 -1.375 -0.413 1.529 sum -8.471 0.840 7.100 11.085 Atomic orbital electron populations 1.21381 0.91877 1.01859 1.02084 1.21535 0.94355 0.91996 1.01798 1.21332 0.99465 0.92290 1.02675 1.23187 1.02825 1.01328 0.91457 1.22388 0.98240 1.04444 0.95363 0.86276 1.19602 0.84385 0.84987 0.79627 1.90635 1.68358 1.21054 1.61370 1.42867 1.25835 1.11401 1.47544 1.17856 0.89774 1.05463 0.93781 1.20660 0.93396 0.98024 0.99354 1.20376 0.99432 1.04961 0.98835 1.20541 0.98857 0.98083 0.96465 1.21171 0.96265 0.97414 1.01075 1.17471 0.93762 0.91711 0.87916 1.19256 0.94542 1.04315 1.32013 0.90839 1.25842 0.95339 0.99465 0.93565 1.69756 1.12595 1.29560 1.31627 0.86294 0.80428 0.80017 0.79467 1.19103 1.20378 1.19134 0.91888 0.92041 0.92472 0.91660 0.91280 0.93795 0.88401 0.88234 0.76186 0.87254 0.89214 0.89344 0.85215 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 9.85 37.15 0.37 -0.80 16 2 C -0.10 -1.25 2.70 -154.51 -0.42 -1.66 16 3 C -0.10 -1.44 8.09 37.16 0.30 -1.14 16 4 C -0.15 -1.85 9.53 -26.73 -0.25 -2.10 16 5 C -0.18 -2.67 5.91 -91.77 -0.54 -3.21 16 6 H 0.12 1.54 8.14 -51.93 -0.42 1.11 16 7 C 0.53 10.14 7.43 -10.99 -0.08 10.06 16 8 O -0.54 -11.65 10.52 5.55 0.06 -11.59 16 9 N -0.64 -13.20 4.96 -9.48 -0.05 -13.25 16 10 C 0.02 0.61 6.34 -83.18 -0.53 0.08 16 11 C -0.09 -2.29 8.69 -39.43 -0.34 -2.63 16 12 C -0.22 -5.09 10.04 -39.35 -0.39 -5.49 16 13 C -0.12 -2.89 9.97 -39.99 -0.40 -3.29 16 14 C -0.14 -3.62 8.61 -39.28 -0.34 -3.96 16 15 C 0.09 2.48 5.56 -106.65 -0.59 1.89 16 16 C -0.47 -11.90 8.22 -37.86 -0.31 -12.21 16 17 H 0.07 1.77 7.63 -52.48 -0.40 1.37 16 18 C 0.07 1.79 5.42 -17.33 -0.09 1.70 16 19 N -0.81 -20.44 10.62 55.55 0.59 -19.85 16 20 Si 0.91 18.22 29.56 -169.99 -5.03 13.19 16 21 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 22 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 23 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 24 H 0.06 0.57 7.92 -51.93 -0.41 0.16 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.50 7.90 -51.93 -0.41 0.09 16 27 H 0.06 1.03 7.01 -51.93 -0.36 0.66 16 28 H 0.07 1.13 7.26 -51.92 -0.38 0.76 16 29 H 0.04 0.52 7.92 -51.93 -0.41 0.11 16 30 H 0.10 1.27 8.05 -51.93 -0.42 0.86 16 31 H 0.10 0.98 8.05 -51.93 -0.42 0.57 16 32 H 0.40 7.62 8.10 -40.82 -0.33 7.29 16 33 H 0.11 2.61 6.19 -52.49 -0.33 2.29 16 34 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 35 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 36 H 0.13 3.47 6.16 -52.48 -0.32 3.15 16 37 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 LS Contribution 306.23 15.07 4.61 4.61 Total: -1.00 -28.28 306.23 -8.45 -36.74 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -5.01 Total: 12.92 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: -3.63 Total: -22.77 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.54 Total: -33.10 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.06 Total: -11.59 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.28 -8.45 -36.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336507704.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.512 kcal (2) G-P(sol) polarization free energy of solvation -28.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds