Wall clock time and date at job start Mon Mar 30 2020 00:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 115.56026 * 2 1 4 4 C 1.53000 * 117.50254 * 145.68830 * 2 1 3 5 5 C 1.53001 * 117.50051 * 214.31459 * 2 1 3 6 6 H 1.09001 * 117.49561 * 359.97438 * 5 2 1 7 7 C 1.50695 * 117.50387 * 145.01862 * 5 2 1 8 8 O 1.21286 * 119.99915 * 0.02562 * 7 5 2 9 9 N 1.34774 * 120.00550 * 180.02562 * 7 5 2 10 10 C 1.39117 * 120.00430 * 175.81006 * 9 7 5 11 11 C 1.38653 * 120.28333 * 34.54938 * 10 9 7 12 12 C 1.38226 * 120.03356 * 179.97438 * 11 10 9 13 13 C 1.38871 * 120.61374 * 0.04371 * 12 11 10 14 14 C 1.36461 * 120.57666 * 0.02562 * 13 12 11 15 15 C 1.40731 * 119.94296 * 359.65608 * 14 13 12 16 16 C 1.41081 * 120.29712 * 180.34563 * 15 14 13 17 17 H 1.08003 * 119.99494 * 214.97809 * 16 15 14 18 18 C 1.39954 * 119.99937 * 34.97553 * 16 15 14 19 19 N 1.30849 * 120.00247 * 355.65896 * 18 16 15 20 20 Si 1.86805 * 119.99657 * 175.65194 * 18 16 15 21 21 H 1.48509 * 109.46865 * 60.00625 * 20 18 16 22 22 H 1.48494 * 109.47119 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47544 * 300.00352 * 20 18 16 24 24 H 1.09000 * 109.47307 * 325.69880 * 1 2 3 25 25 H 1.08998 * 109.47462 * 85.70252 * 1 2 3 26 26 H 1.09004 * 109.47227 * 205.70317 * 1 2 3 27 27 H 1.08998 * 109.47096 * 154.30080 * 3 2 1 28 28 H 1.09007 * 109.46879 * 274.29698 * 3 2 1 29 29 H 1.08993 * 109.47282 * 34.29750 * 3 2 1 30 30 H 1.08996 * 117.50060 * 214.97709 * 4 2 1 31 31 H 1.08999 * 117.49279 * 0.02562 * 4 2 1 32 32 H 0.97005 * 119.99565 * 355.81794 * 9 7 5 33 33 H 1.08002 * 119.98081 * 359.97438 * 11 10 9 34 34 H 1.07995 * 119.69262 * 180.02562 * 12 11 10 35 35 H 1.07999 * 119.70398 * 179.97438 * 13 12 11 36 36 H 1.08005 * 120.02172 * 179.97438 * 14 13 12 37 37 H 0.97000 * 119.99590 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2365 -1.1209 0.7650 5 6 2.2364 -1.1209 -0.7651 6 1 1.6112 -1.8586 -1.2680 7 6 3.5292 -0.7811 -1.4609 8 8 3.9720 0.3464 -1.4009 9 7 4.1934 -1.7300 -2.1499 10 6 5.3398 -1.3970 -2.8642 11 6 6.2034 -0.4234 -2.3860 12 6 7.3413 -0.0969 -3.0996 13 6 7.6319 -0.7354 -4.2981 14 6 6.7986 -1.6963 -4.7926 15 6 5.6370 -2.0521 -4.0822 16 6 4.7741 -3.0496 -4.5829 17 1 3.7077 -2.9655 -4.4339 18 6 5.2999 -4.1480 -5.2727 19 7 6.5820 -4.2079 -5.5275 20 14 4.1715 -5.5286 -5.8294 21 1 3.1422 -4.9851 -6.7517 22 1 4.9681 -6.5661 -6.5322 23 1 3.5070 -6.1324 -4.6465 24 1 -0.3634 0.8489 0.5791 25 1 -0.3634 0.0770 -1.0247 26 1 -0.3634 -0.9260 0.4457 27 1 3.1822 1.3085 0.4456 28 1 2.2774 1.7413 -1.0249 29 1 1.5810 2.0744 0.5790 30 1 3.1715 -0.8751 1.2682 31 1 1.6112 -1.8586 1.2679 32 1 3.8720 -2.6453 -2.1479 33 1 5.9869 0.0801 -1.4554 34 1 8.0104 0.6620 -2.7218 35 1 8.5248 -0.4685 -4.8439 36 1 7.0331 -2.1868 -5.7258 37 1 6.9464 -4.9694 -6.0052 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336507704.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:22 Heat of formation + Delta-G solvation = -13.808085 kcal Electronic energy + Delta-G solvation = -19050.461281 eV Core-core repulsion = 16178.237847 eV Total energy + Delta-G solvation = -2872.223435 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.46751 -39.56473 -37.89270 -35.47215 -35.39746 -31.50335 -30.92925 -29.77840 -28.30511 -27.18094 -25.23651 -23.20319 -22.32494 -20.97986 -20.04152 -19.17304 -18.11115 -17.83630 -16.91267 -16.14474 -15.97283 -15.51423 -15.19139 -14.83080 -14.59127 -14.41555 -14.19305 -13.95783 -13.59187 -13.44151 -13.00574 -12.85880 -12.83040 -12.75571 -12.63705 -12.14567 -12.11078 -11.86715 -11.60522 -11.13616 -11.06115 -10.86589 -10.73429 -10.24399 -9.23980 -8.79093 -8.44729 -6.36611 0.83128 1.06576 1.41642 1.52014 1.53981 1.73246 2.23532 2.42775 2.79593 2.84488 3.66544 3.69786 3.80437 3.89512 4.21317 4.24423 4.49941 4.62209 4.68623 4.76999 4.84478 4.85151 4.99835 5.08703 5.10816 5.13388 5.13822 5.22340 5.33213 5.36393 5.45753 5.58128 5.79471 5.88390 6.14840 6.18701 6.27111 6.66103 6.78484 6.96791 7.03231 7.46269 8.42394 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.019319 B = 0.006448 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.037985 B = 4341.122607 C = 5566.610621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.095 4.095 3 C -0.098 4.098 4 C -0.131 4.131 5 C -0.198 4.198 6 H 0.141 0.859 7 C 0.522 3.478 8 O -0.566 6.566 9 N -0.638 5.638 10 C 0.020 3.980 11 C -0.109 4.109 12 C -0.219 4.219 13 C -0.125 4.125 14 C -0.163 4.163 15 C 0.065 3.935 16 C -0.491 4.491 17 H 0.078 0.922 18 C 0.032 3.968 19 N -0.839 5.839 20 Si 0.986 3.014 21 H -0.264 1.264 22 H -0.274 1.274 23 H -0.255 1.255 24 H 0.076 0.924 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.042 0.958 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.135 0.865 32 H 0.410 0.590 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.481 0.640 8.702 13.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.096 4.096 3 C -0.155 4.155 4 C -0.168 4.168 5 C -0.219 4.219 6 H 0.158 0.842 7 C 0.311 3.689 8 O -0.446 6.446 9 N -0.280 5.280 10 C -0.074 4.074 11 C -0.129 4.129 12 C -0.239 4.239 13 C -0.144 4.144 14 C -0.183 4.183 15 C 0.061 3.939 16 C -0.522 4.522 17 H 0.096 0.904 18 C -0.181 4.181 19 N -0.466 5.466 20 Si 0.807 3.193 21 H -0.188 1.188 22 H -0.198 1.198 23 H -0.179 1.179 24 H 0.095 0.905 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.153 0.847 32 H 0.247 0.753 33 H 0.127 0.873 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.034 1.273 8.642 13.303 hybrid contribution 0.174 -0.974 -0.716 1.222 sum -9.860 0.299 7.926 12.654 Atomic orbital electron populations 1.21400 0.89202 1.03639 1.02495 1.21712 0.96156 0.90773 1.00955 1.21255 0.99099 0.94134 1.01049 1.23315 1.02696 1.01341 0.89433 1.22388 0.96166 1.06574 0.96789 0.84157 1.20474 0.85462 0.84181 0.78743 1.90619 1.69493 1.22238 1.62225 1.42933 1.25199 1.12266 1.47584 1.18025 0.90852 1.04883 0.93654 1.20832 0.93965 0.98443 0.99675 1.20692 0.99507 1.05146 0.98511 1.20776 0.99364 0.97465 0.96790 1.21193 0.97444 0.98602 1.01101 1.17826 0.94479 0.92697 0.88862 1.19469 0.94696 1.04930 1.33072 0.90375 1.26734 0.96757 1.01570 0.93032 1.69844 1.14301 1.30493 1.31963 0.85181 0.78233 0.76628 0.79234 1.18824 1.19848 1.17879 0.90527 0.92266 0.90382 0.93856 0.94108 0.91217 0.89555 0.84711 0.75297 0.87283 0.86682 0.86967 0.86659 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 9.85 71.98 0.71 -1.14 16 2 C -0.10 -2.25 2.70 -52.18 -0.14 -2.40 16 3 C -0.10 -2.74 8.09 71.98 0.58 -2.16 16 4 C -0.13 -2.84 9.53 30.60 0.29 -2.55 16 5 C -0.20 -5.43 5.91 -11.54 -0.07 -5.50 16 6 H 0.14 3.24 8.14 -2.39 -0.02 3.22 16 7 C 0.52 20.14 7.43 87.66 0.65 20.79 16 8 O -0.57 -25.17 10.52 -3.05 -0.03 -25.20 16 9 N -0.64 -26.77 4.96 -302.29 -1.50 -28.27 16 10 C 0.02 1.03 6.34 38.88 0.25 1.27 16 11 C -0.11 -5.39 8.69 22.37 0.19 -5.20 16 12 C -0.22 -10.35 10.04 22.42 0.23 -10.12 16 13 C -0.13 -6.07 9.97 22.01 0.22 -5.85 16 14 C -0.16 -8.74 8.61 22.46 0.19 -8.55 16 15 C 0.06 3.49 5.56 -21.18 -0.12 3.37 16 16 C -0.49 -25.21 8.22 23.38 0.19 -25.02 16 17 H 0.08 3.80 7.63 -2.91 -0.02 3.77 16 18 C 0.03 1.55 5.42 85.26 0.46 2.02 16 19 N -0.84 -43.06 10.62 21.83 0.23 -42.83 16 20 Si 0.99 36.81 29.56 68.60 2.03 38.84 16 21 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 22 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 23 H -0.25 -8.97 7.11 99.48 0.71 -8.27 16 24 H 0.08 1.09 7.92 -2.39 -0.02 1.07 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.08 1.01 7.90 -2.39 -0.02 0.99 16 27 H 0.04 1.37 7.01 -2.39 -0.02 1.35 16 28 H 0.04 1.35 7.26 -2.38 -0.02 1.33 16 29 H 0.07 1.54 7.92 -2.39 -0.02 1.52 16 30 H 0.09 2.11 8.05 -2.39 -0.02 2.09 16 31 H 0.13 2.03 8.05 -2.39 -0.02 2.01 16 32 H 0.41 15.54 8.10 -92.70 -0.75 14.79 16 33 H 0.11 5.33 6.19 -2.91 -0.02 5.32 16 34 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 35 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 36 H 0.12 6.42 6.16 -2.91 -0.02 6.40 16 37 H 0.28 13.36 8.30 -92.71 -0.77 12.60 16 Total: -1.00 -62.70 306.23 4.70 -58.00 By element: Atomic # 1 Polarization: 40.17 SS G_CDS: 0.33 Total: 40.49 kcal Atomic # 6 Polarization: -44.68 SS G_CDS: 3.64 Total: -41.04 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -1.27 Total: -71.10 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.03 Total: -25.20 kcal Atomic # 14 Polarization: 36.81 SS G_CDS: 2.03 Total: 38.84 kcal Total: -62.70 4.70 -58.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336507704.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.195 kcal (2) G-P(sol) polarization free energy of solvation -62.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds