Wall clock time and date at job start Mon Mar 30 2020 00:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38255 * 120.01753 * 2 1 4 4 C 1.38145 * 119.96315 * 180.02562 * 3 2 1 5 5 C 1.38451 * 120.09791 * 359.97438 * 4 3 2 6 6 C 1.38058 * 119.93941 * 0.02562 * 5 4 3 7 7 C 1.38140 * 120.02050 * 180.02562 * 2 1 3 8 8 C 1.50786 * 108.86097 * 179.97438 * 6 5 4 9 9 N 1.46628 * 107.70105 * 359.97438 * 8 6 5 10 10 C 1.34777 * 126.56248 * 180.02562 * 9 8 6 11 11 O 1.21279 * 120.00166 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.99762 * 179.97438 * 10 9 8 13 13 C 1.53002 * 109.46925 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47300 * 180.02562 * 13 12 10 15 15 H 1.07999 * 119.99822 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00339 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99769 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00300 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47118 * 89.99790 * 18 16 14 20 20 H 1.48499 * 109.47134 * 210.00310 * 18 16 14 21 21 H 1.48498 * 109.47011 * 329.99931 * 18 16 14 22 22 C 1.46642 * 106.87285 * 0.25783 * 9 8 6 23 23 H 1.09001 * 109.47681 * 89.99884 * 1 2 3 24 24 H 1.09012 * 109.46923 * 209.99798 * 1 2 3 25 25 H 1.09005 * 109.47085 * 329.99384 * 1 2 3 26 26 H 1.08005 * 120.01522 * 0.02652 * 3 2 1 27 27 H 1.07996 * 119.94940 * 179.97438 * 4 3 2 28 28 H 1.08002 * 119.94954 * 0.02562 * 7 2 1 29 29 H 1.08996 * 109.80828 * 240.44364 * 8 6 5 30 30 H 1.08999 * 109.80771 * 119.54199 * 8 6 5 31 31 H 1.09000 * 109.47318 * 299.99141 * 12 10 9 32 32 H 1.09000 * 109.47161 * 59.99772 * 12 10 9 33 33 H 1.09004 * 109.46930 * 299.99901 * 13 12 10 34 34 H 1.09004 * 109.47059 * 59.99503 * 13 12 10 35 35 H 0.97000 * 120.00540 * 179.97438 * 17 16 14 36 36 H 1.08997 * 109.80733 * 119.29096 * 22 9 8 37 37 H 1.09005 * 109.81170 * 240.19006 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.1971 0.0000 4 6 3.5801 1.1958 -0.0005 5 6 4.2732 -0.0027 -0.0005 6 6 3.5826 -1.1981 -0.0005 7 6 2.1981 -1.1961 -0.0005 8 6 4.5742 -2.3340 -0.0012 9 7 5.9197 -1.7512 -0.0022 10 6 7.0867 -2.4254 -0.0035 11 8 7.0864 -3.6382 -0.0034 12 6 8.3921 -1.6722 -0.0050 13 6 9.5547 -2.6668 -0.0056 14 6 10.8600 -1.9137 -0.0065 15 1 10.8603 -0.8337 -0.0062 16 6 12.0539 -2.6034 -0.0066 17 7 12.0535 -3.9185 -0.0065 18 14 13.6719 -1.6699 -0.0070 19 1 14.1009 -1.4223 1.3930 20 1 14.7064 -2.4728 -0.7071 21 1 13.4946 -0.3724 -0.7071 22 6 5.7525 -0.2943 0.0041 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8901 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6591 2.1328 0.0004 27 1 4.1201 2.1310 -0.0010 28 1 1.6576 -2.1311 -0.0014 29 1 4.4358 -2.9447 -0.8933 30 1 4.4366 -2.9450 0.8909 31 1 8.4491 -1.0457 -0.8951 32 1 8.4509 -1.0455 0.8849 33 1 9.4976 -3.2930 0.8848 34 1 9.4959 -3.2939 -0.8952 35 1 12.8933 -4.4038 -0.0069 36 1 6.2111 0.1262 0.8991 37 1 6.2146 0.1345 -0.8851 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336508188.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:04:56 Heat of formation + Delta-G solvation = -37.825663 kcal Electronic energy + Delta-G solvation = -18202.859034 eV Core-core repulsion = 15329.594119 eV Total energy + Delta-G solvation = -2873.264915 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.75830 -40.13699 -37.49584 -35.60603 -33.51749 -33.14919 -32.27067 -29.54008 -28.68672 -27.09763 -25.38177 -23.47927 -22.61348 -21.45719 -20.36996 -18.83913 -17.76647 -17.41144 -16.98783 -16.54349 -16.33175 -15.82750 -15.68539 -15.46064 -14.49766 -14.47662 -14.18282 -14.10841 -13.93931 -13.68639 -13.52456 -13.17017 -12.95757 -12.82252 -12.61682 -12.48824 -12.23718 -11.95865 -11.75635 -11.65675 -11.32739 -10.93005 -10.57454 -10.12530 -9.73468 -9.22096 -8.18436 -6.32818 0.28246 0.39536 1.42480 1.45578 1.54871 1.56474 1.79570 2.43120 2.69703 3.14687 3.19524 3.42992 3.81902 4.02531 4.07688 4.29865 4.36463 4.41310 4.43052 4.48779 4.51654 4.57909 4.61689 4.76516 4.87992 4.92768 4.97377 5.09197 5.15814 5.29062 5.40417 5.48306 5.59356 5.59545 5.64972 5.83332 6.03026 6.15610 6.35671 6.84897 7.09097 7.37492 8.94516 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.049646 B = 0.003470 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.862503 B = 8067.294747 C = 8594.750921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.086 4.086 3 C -0.117 4.117 4 C -0.091 4.091 5 C -0.123 4.123 6 C -0.116 4.116 7 C -0.107 4.107 8 C 0.145 3.855 9 N -0.622 5.622 10 C 0.533 3.467 11 O -0.583 6.583 12 C -0.109 4.109 13 C 0.042 3.958 14 C -0.542 4.542 15 H 0.078 0.922 16 C -0.008 4.008 17 N -0.939 5.939 18 Si 0.976 3.024 19 H -0.271 1.271 20 H -0.286 1.286 21 H -0.254 1.254 22 C 0.141 3.859 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.156 0.844 27 H 0.150 0.850 28 H 0.134 0.866 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.106 0.894 33 H -0.017 1.017 34 H -0.017 1.017 35 H 0.263 0.737 36 H 0.097 0.903 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.673 15.045 0.006 28.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.086 4.086 3 C -0.134 4.134 4 C -0.109 4.109 5 C -0.123 4.123 6 C -0.116 4.116 7 C -0.125 4.125 8 C 0.023 3.977 9 N -0.356 5.356 10 C 0.324 3.676 11 O -0.462 6.462 12 C -0.148 4.148 13 C 0.004 3.996 14 C -0.580 4.580 15 H 0.096 0.904 16 C -0.205 4.205 17 N -0.579 5.579 18 Si 0.799 3.201 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.178 1.178 22 C 0.019 3.981 23 H 0.098 0.902 24 H 0.090 0.910 25 H 0.101 0.899 26 H 0.173 0.827 27 H 0.168 0.832 28 H 0.152 0.848 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.001 0.999 34 H 0.002 0.998 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -23.472 14.202 0.001 27.434 hybrid contribution 1.058 -0.606 0.006 1.219 sum -22.414 13.597 0.007 26.216 Atomic orbital electron populations 1.20838 0.88787 1.03903 1.03282 1.20190 0.97670 0.92358 0.98414 1.21346 0.93482 0.98771 0.99827 1.20773 0.94419 0.96679 0.99027 1.20388 0.94393 0.94661 1.02876 1.20254 0.94430 0.94444 1.02480 1.20564 0.91188 0.99408 1.01359 1.20170 0.80638 0.94860 1.02064 1.48086 1.04981 1.08553 1.73990 1.21094 0.84923 0.87294 0.74245 1.90664 1.87534 1.16341 1.51706 1.21622 0.89043 0.99267 1.04905 1.18713 0.92366 0.93672 0.94827 1.21687 0.91397 0.94056 1.50877 0.90403 1.26162 1.04036 0.95732 0.94579 1.70181 1.27882 1.08367 1.51426 0.85290 0.77546 0.78679 0.78547 1.19669 1.21214 1.17761 1.20504 0.93698 0.79665 1.04234 0.90176 0.91007 0.89916 0.82685 0.83180 0.84787 0.91113 0.91117 0.87607 0.87597 0.99857 0.99836 0.92820 0.88462 0.88478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 71.23 0.71 -0.27 16 2 C -0.09 -1.27 5.88 -19.88 -0.12 -1.39 16 3 C -0.12 -1.57 9.70 22.25 0.22 -1.35 16 4 C -0.09 -1.43 10.05 22.30 0.22 -1.20 16 5 C -0.12 -2.62 6.22 -19.83 -0.12 -2.74 16 6 C -0.12 -2.70 6.22 -19.83 -0.12 -2.82 16 7 C -0.11 -2.00 9.70 22.30 0.22 -1.79 16 8 C 0.15 4.23 6.91 85.64 0.59 4.83 16 9 N -0.62 -20.24 3.34 -829.51 -2.77 -23.01 16 10 C 0.53 22.49 7.87 87.66 0.69 23.18 16 11 O -0.58 -30.48 16.35 -3.03 -0.05 -30.53 16 12 C -0.11 -4.56 4.89 29.85 0.15 -4.41 16 13 C 0.04 2.38 4.26 29.85 0.13 2.51 16 14 C -0.54 -31.13 9.11 25.60 0.23 -30.89 16 15 H 0.08 4.04 7.74 -2.91 -0.02 4.01 16 16 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 17 N -0.94 -60.17 13.29 21.45 0.28 -59.88 16 18 Si 0.98 44.47 29.54 68.60 2.03 46.50 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 20 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.25 -10.68 7.11 99.48 0.71 -9.98 16 22 C 0.14 3.32 6.54 85.63 0.56 3.88 16 23 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.07 0.58 8.09 -2.38 -0.02 0.56 16 25 H 0.08 0.50 8.09 -2.38 -0.02 0.48 16 26 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 27 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 28 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 29 H 0.07 2.12 8.14 -2.39 -0.02 2.11 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 32 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 33 H -0.02 -1.09 8.10 -2.38 -0.02 -1.11 16 34 H -0.02 -1.08 8.10 -2.39 -0.02 -1.10 16 35 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 36 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -77.98 316.24 4.35 -73.63 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 1.04 Total: 5.76 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 3.82 Total: -12.46 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -2.48 Total: -82.90 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.05 Total: -30.53 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -77.98 4.35 -73.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336508188.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.805 kcal (2) G-P(sol) polarization free energy of solvation -77.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds