Wall clock time and date at job start Sun Mar 29 2020 23:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46904 * 110.99963 * 183.95369 * 12 2 1 14 14 C 1.46905 * 110.99800 * 60.00278 * 12 2 1 15 15 C 1.50700 * 109.47326 * 189.99540 * 14 12 2 16 16 C 1.39869 * 125.89386 * 94.71563 * 15 14 12 17 17 C 1.35312 * 107.91908 * 179.86756 * 16 15 14 18 18 N 1.34945 * 107.74624 * 0.39480 * 17 16 15 19 19 C 1.46505 * 126.04049 * 179.75620 * 18 17 16 20 20 F 1.39900 * 109.47005 * 209.97234 * 19 18 17 21 21 F 1.39901 * 109.46635 * 329.96896 * 19 18 17 22 22 N 1.30832 * 125.90158 * 275.02969 * 15 14 12 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.46991 * 60.00787 * 13 12 2 28 28 H 1.08998 * 109.46942 * 180.02562 * 13 12 2 29 29 H 1.08998 * 109.47155 * 300.00314 * 13 12 2 30 30 H 1.08997 * 109.47089 * 310.00066 * 14 12 2 31 31 H 1.09006 * 109.47115 * 69.99884 * 14 12 2 32 32 H 1.08005 * 126.04441 * 359.97438 * 16 15 14 33 33 H 1.07997 * 126.12924 * 180.14814 * 17 16 15 34 34 H 1.09002 * 109.47273 * 89.97122 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9489 5.1124 11 1 2.4880 -2.5653 3.7122 12 7 2.0196 -0.6926 -1.1994 13 6 3.4851 -0.7946 -1.1870 14 6 1.5486 -0.0265 -2.4211 15 6 1.8580 -0.8912 -3.6159 16 6 0.9857 -1.8070 -4.2133 17 6 1.6324 -2.3793 -5.2550 18 7 2.8729 -1.8510 -5.3094 19 6 3.9129 -2.1917 -6.2834 20 9 5.1725 -2.0284 -5.6969 21 9 3.7556 -3.5218 -6.6874 22 7 2.9907 -0.9192 -4.2701 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7082 1.1609 3.4844 27 1 3.8029 -1.3533 -0.3067 28 1 3.8209 -1.3110 -2.0862 29 1 3.9187 0.2050 -1.1591 30 1 0.4722 0.1323 -2.3564 31 1 2.0519 0.9345 -2.5281 32 1 -0.0259 -2.0186 -3.8997 33 1 1.2294 -3.1279 -5.9210 34 1 3.8279 -1.5361 -7.1501 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347731950.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:18 Heat of formation + Delta-G solvation = 0.743894 kcal Electronic energy + Delta-G solvation = -19398.432217 eV Core-core repulsion = 16004.903025 eV Total energy + Delta-G solvation = -3393.529192 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.48905 -47.60303 -41.08828 -36.97029 -33.33986 -32.17600 -30.12163 -29.07863 -27.98315 -25.53137 -24.47789 -23.14862 -21.26574 -20.10394 -19.11216 -18.49208 -18.23940 -17.37666 -16.26618 -15.28156 -14.81019 -14.67851 -14.40952 -14.20974 -13.95583 -13.78356 -13.66541 -13.22674 -13.14210 -12.40021 -12.27801 -12.03611 -11.64021 -11.12406 -10.99052 -10.71068 -10.66220 -10.52490 -10.13273 -9.98121 -9.86133 -9.35754 -8.85028 -8.69483 -8.39414 -7.16665 -5.98905 -4.02809 1.65685 1.93116 2.89777 3.28114 3.33103 3.39482 3.44242 3.86097 4.25771 4.44244 4.67875 4.91216 5.25410 5.34155 5.38038 5.77099 5.96731 6.08660 6.18795 6.35358 6.50969 6.58873 6.77679 6.86955 6.91539 7.06631 7.16198 7.53110 7.68640 7.74664 7.85828 8.21559 8.33831 8.60502 9.03388 9.61970 11.08044 Molecular weight = 259.12amu Principal moments of inertia in cm(-1) A = 0.035380 B = 0.004490 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.211771 B = 6235.135380 C = 6623.398114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.213 3.787 3 H 0.000 1.000 4 C -0.502 4.502 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.530 5.530 13 C 0.038 3.962 14 C 0.123 3.877 15 C 0.116 3.884 16 C -0.234 4.234 17 C 0.054 3.946 18 N -0.449 5.449 19 C 0.515 3.485 20 F -0.175 7.175 21 F -0.186 7.186 22 N -0.274 5.274 23 H 0.009 0.991 24 H 0.086 0.914 25 H 0.036 0.964 26 H 0.260 0.740 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.012 0.988 30 H 0.098 0.902 31 H 0.039 0.961 32 H 0.155 0.845 33 H 0.177 0.823 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.327 -4.372 -18.129 18.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.107 3.893 3 H 0.018 0.982 4 C -0.540 4.540 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.256 5.256 13 C -0.111 4.111 14 C -0.007 4.007 15 C -0.054 4.054 16 C -0.263 4.263 17 C -0.087 4.087 18 N -0.242 5.242 19 C 0.380 3.620 20 F -0.156 7.156 21 F -0.168 7.168 22 N -0.094 5.094 23 H 0.028 0.972 24 H 0.105 0.895 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.031 0.969 30 H 0.116 0.884 31 H 0.057 0.943 32 H 0.173 0.827 33 H 0.194 0.806 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.375 -4.353 -18.195 18.858 hybrid contribution -0.047 -0.240 0.880 0.914 sum 2.328 -4.593 -17.314 18.064 Atomic orbital electron populations 1.21876 0.97599 0.99807 0.99964 1.19285 0.92404 0.92073 0.85527 0.98197 1.21145 1.30937 1.12282 0.89658 0.91861 1.24915 0.95206 0.95101 0.98971 1.69887 1.36944 1.23094 1.23396 0.86521 0.78440 0.80098 0.82495 1.20818 1.21264 1.19867 1.62129 1.09894 1.52355 1.01223 1.22231 0.88238 0.99271 1.01312 1.20607 1.01661 0.92426 0.86033 1.22728 0.90346 0.96531 0.95766 1.21562 1.02945 1.02851 0.98910 1.22419 0.85355 1.00105 1.00814 1.49814 1.11109 1.35525 1.27730 1.21142 0.73537 0.79934 0.87375 1.93126 1.40997 1.95297 1.86182 1.93108 1.95107 1.38508 1.90060 1.77532 1.22020 1.10391 0.99474 0.97170 0.89548 0.94493 0.93003 0.90808 0.93333 0.96918 0.88445 0.94264 0.82708 0.80627 0.83368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.76 37.16 0.33 -2.89 16 2 C 0.21 5.39 2.06 -68.86 -0.14 5.25 16 3 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 4 C -0.50 -13.84 7.93 -34.44 -0.27 -14.11 16 5 H 0.06 1.76 6.39 -52.49 -0.34 1.43 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.40 11.32 55.43 0.63 -24.77 16 8 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 12 N -0.53 -11.82 4.61 -237.72 -1.10 -12.91 16 13 C 0.04 0.83 9.06 60.07 0.54 1.37 16 14 C 0.12 2.31 5.34 -4.97 -0.03 2.29 16 15 C 0.12 1.98 5.98 -82.41 -0.49 1.49 16 16 C -0.23 -3.33 10.74 -40.01 -0.43 -3.76 16 17 C 0.05 0.65 11.05 -17.23 -0.19 0.46 16 18 N -0.45 -6.05 3.97 -66.65 -0.26 -6.32 16 19 C 0.51 5.09 6.63 59.85 0.40 5.48 16 20 F -0.17 -2.21 17.36 2.25 0.04 -2.17 16 21 F -0.19 -1.81 17.01 2.25 0.04 -1.77 16 22 N -0.27 -4.68 11.27 33.67 0.38 -4.30 16 23 H 0.01 0.20 6.20 -51.93 -0.32 -0.12 16 24 H 0.09 2.27 6.07 -51.93 -0.32 1.95 16 25 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.07 1.68 6.23 -51.93 -0.32 1.35 16 28 H 0.05 1.01 6.32 -51.93 -0.33 0.68 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.10 1.73 5.83 -51.93 -0.30 1.43 16 31 H 0.04 0.75 8.12 -51.93 -0.42 0.33 16 32 H 0.16 1.93 8.06 -52.48 -0.42 1.51 16 33 H 0.18 1.41 8.06 -52.49 -0.42 0.98 16 34 H 0.15 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 291.43 15.07 4.39 4.39 Total: -1.00 -31.31 291.43 -5.31 -36.62 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -4.02 Total: -2.35 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -0.38 Total: -2.88 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.36 Total: -48.31 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.08 Total: -3.94 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.31 -5.31 -36.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347731950.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.367 kcal (2) G-P(sol) polarization free energy of solvation -31.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds