Wall clock time and date at job start Sun Mar 29 2020 23:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46904 * 110.99963 * 183.95369 * 12 2 1 14 14 C 1.46905 * 110.99800 * 60.00278 * 12 2 1 15 15 C 1.50700 * 109.47326 * 189.99540 * 14 12 2 16 16 C 1.39869 * 125.89386 * 94.71563 * 15 14 12 17 17 C 1.35312 * 107.91908 * 179.86756 * 16 15 14 18 18 N 1.34945 * 107.74624 * 0.39480 * 17 16 15 19 19 C 1.46505 * 126.04049 * 179.75620 * 18 17 16 20 20 F 1.39900 * 109.47005 * 209.97234 * 19 18 17 21 21 F 1.39901 * 109.46635 * 329.96896 * 19 18 17 22 22 N 1.30832 * 125.90158 * 275.02969 * 15 14 12 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.46991 * 60.00787 * 13 12 2 28 28 H 1.08998 * 109.46942 * 180.02562 * 13 12 2 29 29 H 1.08998 * 109.47155 * 300.00314 * 13 12 2 30 30 H 1.08997 * 109.47089 * 310.00066 * 14 12 2 31 31 H 1.09006 * 109.47115 * 69.99884 * 14 12 2 32 32 H 1.08005 * 126.04441 * 359.97438 * 16 15 14 33 33 H 1.07997 * 126.12924 * 180.14814 * 17 16 15 34 34 H 1.09002 * 109.47273 * 89.97122 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9489 5.1124 11 1 2.4880 -2.5653 3.7122 12 7 2.0196 -0.6926 -1.1994 13 6 3.4851 -0.7946 -1.1870 14 6 1.5486 -0.0265 -2.4211 15 6 1.8580 -0.8912 -3.6159 16 6 0.9857 -1.8070 -4.2133 17 6 1.6324 -2.3793 -5.2550 18 7 2.8729 -1.8510 -5.3094 19 6 3.9129 -2.1917 -6.2834 20 9 5.1725 -2.0284 -5.6969 21 9 3.7556 -3.5218 -6.6874 22 7 2.9907 -0.9192 -4.2701 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7082 1.1609 3.4844 27 1 3.8029 -1.3533 -0.3067 28 1 3.8209 -1.3110 -2.0862 29 1 3.9187 0.2050 -1.1591 30 1 0.4722 0.1323 -2.3564 31 1 2.0519 0.9345 -2.5281 32 1 -0.0259 -2.0186 -3.8997 33 1 1.2294 -3.1279 -5.9210 34 1 3.8279 -1.5361 -7.1501 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347731950.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:18 Heat of formation + Delta-G solvation = -20.512208 kcal Electronic energy + Delta-G solvation = -19399.353951 eV Core-core repulsion = 16004.903025 eV Total energy + Delta-G solvation = -3394.450926 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.29231 -48.42857 -42.18625 -38.74133 -35.07775 -33.63617 -31.33282 -30.85334 -29.48217 -27.09718 -26.08345 -24.79095 -22.25353 -21.75220 -20.58972 -19.42293 -19.01677 -18.39132 -18.17805 -17.10457 -16.10601 -16.04164 -15.84984 -15.25974 -15.17568 -15.01784 -14.82798 -14.65897 -14.21621 -14.08342 -13.90447 -13.17169 -13.14770 -12.94335 -12.79627 -12.61195 -12.49888 -12.07740 -12.02233 -11.79240 -11.64735 -10.88358 -10.59328 -10.43076 -9.74804 -8.99946 -8.10001 -6.21263 0.63313 1.00647 1.43038 1.43938 1.54647 1.72906 2.44275 2.59604 2.97216 3.18372 3.47066 3.61631 3.80600 3.82756 4.17219 4.49780 4.61702 4.63780 4.72818 4.80917 4.96906 5.02445 5.05066 5.08347 5.23483 5.46320 5.52997 5.73532 5.79491 5.82776 6.27093 6.33827 6.58005 6.68083 6.91354 7.47366 8.95991 Molecular weight = 259.12amu Principal moments of inertia in cm(-1) A = 0.035380 B = 0.004490 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.211771 B = 6235.135380 C = 6623.398114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.217 3.783 3 H -0.034 1.034 4 C -0.521 4.521 5 H 0.055 0.945 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.958 3.042 9 H -0.278 1.278 10 H -0.280 1.280 11 H -0.271 1.271 12 N -0.534 5.534 13 C 0.050 3.950 14 C 0.127 3.873 15 C 0.094 3.906 16 C -0.255 4.255 17 C 0.077 3.923 18 N -0.450 5.450 19 C 0.509 3.491 20 F -0.194 7.194 21 F -0.183 7.183 22 N -0.309 5.309 23 H 0.038 0.962 24 H 0.061 0.939 25 H 0.035 0.965 26 H 0.262 0.738 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.004 0.996 30 H 0.106 0.894 31 H 0.030 0.970 32 H 0.168 0.832 33 H 0.222 0.778 34 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.083 -5.714 -19.742 20.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.110 3.890 3 H -0.017 1.017 4 C -0.559 4.559 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.784 3.216 9 H -0.204 1.204 10 H -0.206 1.206 11 H -0.196 1.196 12 N -0.260 5.260 13 C -0.099 4.099 14 C -0.003 4.003 15 C -0.074 4.074 16 C -0.284 4.284 17 C -0.065 4.065 18 N -0.243 5.243 19 C 0.376 3.624 20 F -0.176 7.176 21 F -0.165 7.165 22 N -0.131 5.131 23 H 0.057 0.943 24 H 0.080 0.920 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.023 0.977 30 H 0.124 0.876 31 H 0.048 0.952 32 H 0.186 0.814 33 H 0.238 0.762 34 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 2.141 -5.696 -19.826 20.738 hybrid contribution 0.060 0.145 1.250 1.260 sum 2.201 -5.551 -18.576 19.512 Atomic orbital electron populations 1.21676 0.96452 0.99675 1.00164 1.19106 0.93255 0.90161 0.86474 1.01668 1.21393 1.31214 1.12290 0.91013 0.92673 1.25654 0.95331 0.95767 1.01689 1.70004 1.37577 1.24066 1.24092 0.85551 0.77991 0.78988 0.79046 1.20414 1.20561 1.19558 1.62058 1.09946 1.52327 1.01624 1.22082 0.88214 0.98592 1.00977 1.20530 1.01857 0.92373 0.85506 1.22459 0.91588 0.97604 0.95718 1.21789 1.03662 1.03030 0.99884 1.23066 0.84276 0.99160 0.99956 1.50136 1.12424 1.34518 1.27179 1.22039 0.71829 0.80822 0.87687 1.93089 1.42365 1.95426 1.86679 1.93116 1.94943 1.38665 1.89744 1.77407 1.22392 1.12282 1.01009 0.94308 0.91978 0.94592 0.92851 0.92323 0.92300 0.97737 0.87568 0.95186 0.81413 0.76180 0.78036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.85 8.76 71.98 0.63 -5.22 16 2 C 0.22 11.23 2.06 44.17 0.09 11.32 16 3 H -0.03 -1.97 8.14 -2.39 -0.02 -1.99 16 4 C -0.52 -29.25 7.93 25.60 0.20 -29.05 16 5 H 0.06 3.12 6.39 -2.91 -0.02 3.11 16 6 C 0.01 0.81 5.30 84.66 0.45 1.25 16 7 N -0.92 -52.85 11.32 21.45 0.24 -52.61 16 8 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 9 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 12 N -0.53 -24.13 4.61 -906.01 -4.18 -28.31 16 13 C 0.05 2.22 9.06 127.69 1.16 3.38 16 14 C 0.13 4.80 5.34 85.56 0.46 5.26 16 15 C 0.09 3.15 5.98 43.10 0.26 3.41 16 16 C -0.26 -6.72 10.74 21.99 0.24 -6.48 16 17 C 0.08 1.59 11.05 83.54 0.92 2.51 16 18 N -0.45 -10.90 3.97 -364.79 -1.45 -12.35 16 19 C 0.51 8.44 6.63 127.77 0.85 9.29 16 20 F -0.19 -4.57 17.36 44.97 0.78 -3.79 16 21 F -0.18 -2.92 17.01 44.97 0.77 -2.16 16 22 N -0.31 -10.22 11.27 -47.39 -0.53 -10.76 16 23 H 0.04 1.59 6.20 -2.39 -0.01 1.57 16 24 H 0.06 3.30 6.07 -2.39 -0.01 3.29 16 25 H 0.03 1.69 8.14 -2.38 -0.02 1.67 16 26 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 27 H 0.06 2.73 6.23 -2.39 -0.01 2.72 16 28 H 0.06 2.47 6.32 -2.39 -0.02 2.45 16 29 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.11 3.73 5.83 -2.39 -0.01 3.71 16 31 H 0.03 1.17 8.12 -2.38 -0.02 1.16 16 32 H 0.17 3.81 8.06 -2.91 -0.02 3.79 16 33 H 0.22 2.37 8.06 -2.91 -0.02 2.35 16 34 H 0.20 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -68.60 291.43 4.02 -64.58 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: 1.11 Total: 3.42 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 5.25 Total: -4.33 kcal Atomic # 7 Polarization: -98.10 SS G_CDS: -5.92 Total: -104.02 kcal Atomic # 9 Polarization: -7.49 SS G_CDS: 1.55 Total: -5.94 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -68.60 4.02 -64.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347731950.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.069 kcal (2) G-P(sol) polarization free energy of solvation -68.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds