Wall clock time and date at job start Sun Mar 29 2020 23:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00153 * 2 1 4 4 H 1.48495 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46977 * 299.99883 * 3 2 1 6 6 H 1.48496 * 109.47065 * 59.99599 * 3 2 1 7 7 C 1.37879 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99610 * 184.59481 * 7 2 1 9 9 C 1.50703 * 120.00077 * 4.59140 * 7 2 1 10 10 H 1.08996 * 109.46706 * 174.68728 * 9 7 2 11 11 C 1.52996 * 109.47018 * 54.68445 * 9 7 2 12 12 C 1.50700 * 109.47341 * 64.99967 * 11 9 7 13 13 O 1.21289 * 119.99643 * 359.97438 * 12 11 9 14 14 N 1.34774 * 120.00461 * 180.02562 * 12 11 9 15 15 C 1.46500 * 120.00432 * 180.02562 * 14 12 11 16 16 C 1.52998 * 117.49738 * 223.62053 * 15 14 12 17 17 C 1.53001 * 117.50100 * 154.99600 * 15 14 12 18 18 C 1.50704 * 109.47058 * 294.68294 * 9 7 2 19 19 C 1.38230 * 119.99900 * 271.63751 * 18 9 7 20 20 C 1.38234 * 119.99675 * 179.97438 * 19 18 9 21 21 C 1.38229 * 120.00130 * 359.96119 * 20 19 18 22 22 C 1.38234 * 120.00249 * 359.97438 * 21 20 19 23 23 C 1.38232 * 119.99884 * 0.07544 * 22 21 20 24 24 H 0.97003 * 120.00319 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46976 * 185.00095 * 11 9 7 26 26 H 1.09006 * 109.47146 * 304.99648 * 11 9 7 27 27 H 0.97006 * 119.99613 * 359.97438 * 14 12 11 28 28 H 1.08999 * 115.54793 * 9.31796 * 15 14 12 29 29 H 1.09004 * 117.49688 * 359.97438 * 16 15 14 30 30 H 1.08994 * 117.50119 * 145.01731 * 16 15 14 31 31 H 1.08993 * 117.49627 * 214.97768 * 17 15 14 32 32 H 1.08997 * 117.49622 * 359.97438 * 17 15 14 33 33 H 1.08001 * 120.00158 * 359.97438 * 19 18 9 34 34 H 1.08005 * 119.99899 * 179.97438 * 20 19 18 35 35 H 1.07999 * 120.00060 * 179.71697 * 21 20 19 36 36 H 1.08001 * 120.00212 * 179.97438 * 22 21 20 37 37 H 1.08000 * 120.00541 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0818 -1.1955 0.0755 9 6 1.2546 -2.4972 -0.1034 10 1 1.9651 -3.3199 -0.1821 11 6 0.3614 -2.4739 -1.3453 12 6 1.2212 -2.4091 -2.5813 13 8 2.4295 -2.3835 -2.4788 14 7 0.6476 -2.3785 -3.8005 15 6 1.4835 -2.3161 -5.0020 16 6 1.0584 -1.3491 -6.1088 17 6 0.8901 -2.8572 -6.3044 18 6 0.4021 -2.6854 1.1250 19 6 0.9278 -3.3062 2.2426 20 6 0.1460 -3.4784 3.3696 21 6 -1.1612 -3.0291 3.3791 22 6 -1.6866 -2.4071 2.2620 23 6 -0.9051 -2.2358 1.1347 24 1 -0.4851 0.8400 -0.0004 25 1 -0.2465 -3.3782 -1.3726 26 1 -0.2889 -1.5999 -1.3089 27 1 -0.3188 -2.3986 -3.8824 28 1 2.5520 -2.4567 -4.8391 29 1 0.1566 -0.7596 -5.9431 30 1 1.8473 -0.8532 -6.6743 31 1 1.5683 -3.3535 -6.9984 32 1 -0.1220 -3.2600 -6.2671 33 1 1.9493 -3.6567 2.2354 34 1 0.5566 -3.9638 4.2426 35 1 -1.7735 -3.1678 4.2580 36 1 -2.7080 -2.0565 2.2693 37 1 -1.3156 -1.7503 0.2617 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353309441.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:33 Heat of formation + Delta-G solvation = 12.948647 kcal Electronic energy + Delta-G solvation = -19201.570780 eV Core-core repulsion = 16330.507605 eV Total energy + Delta-G solvation = -2871.063176 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.12406 -38.12734 -36.62353 -34.17770 -32.15527 -31.02863 -29.80818 -28.37308 -25.88230 -22.93199 -22.29466 -21.68605 -21.15066 -20.09089 -19.21376 -16.67911 -16.22119 -15.77331 -15.49159 -14.92841 -14.30360 -14.04860 -13.80932 -13.68699 -13.04091 -12.80415 -12.42232 -12.21553 -11.66274 -11.56212 -11.49830 -11.44230 -11.02627 -10.90128 -10.71087 -10.39134 -10.38034 -10.14358 -9.91974 -9.28566 -9.17124 -8.80124 -8.41572 -8.20922 -7.79272 -7.42860 -5.96801 -4.06354 2.50893 2.59493 3.30497 3.38406 3.45803 3.54222 3.73322 4.17820 4.44757 4.96486 4.98604 5.12574 5.14306 5.26055 5.65717 5.71874 5.82420 5.91055 5.93561 6.02545 6.13733 6.27745 6.37784 6.47360 6.58890 6.72514 6.79015 7.07317 7.15026 7.17428 7.27653 7.48416 7.55378 7.70454 7.94697 8.08949 8.19233 8.24221 8.36034 8.90924 9.19496 9.56989 10.97267 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.018270 B = 0.006997 C = 0.005757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.238031 B = 4000.546208 C = 4862.516338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.468 4.468 8 H 0.060 0.940 9 C 0.087 3.913 10 H 0.038 0.962 11 C -0.138 4.138 12 C 0.527 3.473 13 O -0.525 6.525 14 N -0.720 5.720 15 C 0.092 3.908 16 C -0.201 4.201 17 C -0.198 4.198 18 C -0.028 4.028 19 C -0.131 4.131 20 C -0.142 4.142 21 C -0.154 4.154 22 C -0.143 4.143 23 C -0.069 4.069 24 H 0.259 0.741 25 H 0.053 0.947 26 H 0.133 0.867 27 H 0.395 0.605 28 H 0.133 0.867 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.028 -4.887 -5.835 8.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.506 4.506 8 H 0.078 0.922 9 C 0.068 3.932 10 H 0.056 0.944 11 C -0.178 4.178 12 C 0.316 3.684 13 O -0.399 6.399 14 N -0.372 5.372 15 C -0.015 4.015 16 C -0.240 4.240 17 C -0.236 4.236 18 C -0.028 4.028 19 C -0.150 4.150 20 C -0.160 4.160 21 C -0.172 4.172 22 C -0.162 4.162 23 C -0.087 4.087 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.150 0.850 27 H 0.228 0.772 28 H 0.151 0.849 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.243 -4.725 -5.701 8.084 hybrid contribution -0.117 1.244 -0.008 1.249 sum -3.360 -3.481 -5.708 7.483 Atomic orbital electron populations 1.69675 1.05580 1.26001 1.51743 1.24892 0.94933 0.98993 0.95254 0.86516 0.80486 0.83740 0.77267 1.19798 1.21188 1.21267 1.21030 0.93234 0.89383 1.46940 0.92206 1.17641 0.91763 0.97004 0.86769 0.94397 1.21940 0.99872 1.03563 0.92457 1.21204 0.89540 0.73728 0.83934 1.90605 1.15217 1.47767 1.86349 1.45659 1.09089 1.77564 1.04923 1.21454 0.96827 1.02113 0.81060 1.23381 1.03910 0.92584 1.04115 1.23333 1.02641 0.96737 1.00906 1.20343 0.93537 0.92115 0.96826 1.20895 0.98889 1.01435 0.93733 1.20797 0.94760 1.02705 0.97737 1.20764 0.95815 1.02644 0.98008 1.21045 0.99215 1.01223 0.94670 1.21371 0.93612 0.95073 0.98675 0.93024 0.92818 0.84971 0.77157 0.84931 0.88752 0.88564 0.88481 0.88843 0.87647 0.88097 0.88313 0.88098 0.84246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.72 7.97 55.43 0.44 -22.28 16 2 C 0.06 1.55 5.13 -17.82 -0.09 1.46 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.47 -12.62 7.27 -34.44 -0.25 -12.87 16 8 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 9 C 0.09 2.10 1.97 -92.92 -0.18 1.92 16 10 H 0.04 0.93 7.91 -51.93 -0.41 0.52 16 11 C -0.14 -2.95 4.08 -27.89 -0.11 -3.06 16 12 C 0.53 11.19 7.58 -10.99 -0.08 11.11 16 13 O -0.53 -13.08 14.55 5.55 0.08 -13.00 16 14 N -0.72 -12.04 5.57 -53.81 -0.30 -12.34 16 15 C 0.09 1.39 6.43 -67.93 -0.44 0.95 16 16 C -0.20 -2.49 10.46 -26.73 -0.28 -2.77 16 17 C -0.20 -2.22 10.46 -26.73 -0.28 -2.50 16 18 C -0.03 -0.63 4.69 -104.62 -0.49 -1.12 16 19 C -0.13 -2.81 9.71 -39.59 -0.38 -3.20 16 20 C -0.14 -2.74 10.05 -39.59 -0.40 -3.13 16 21 C -0.15 -2.91 10.05 -39.59 -0.40 -3.30 16 22 C -0.14 -2.85 10.05 -39.58 -0.40 -3.24 16 23 C -0.07 -1.51 7.46 -39.58 -0.30 -1.81 16 24 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.13 2.99 4.70 -51.93 -0.24 2.74 16 27 H 0.40 5.51 8.83 -40.82 -0.36 5.15 16 28 H 0.13 2.20 7.40 -51.93 -0.38 1.81 16 29 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.11 2.14 8.06 -52.49 -0.42 1.72 16 34 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 35 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 37 H 0.14 3.11 5.17 -52.49 -0.27 2.84 16 LS Contribution 307.38 15.07 4.63 4.63 Total: -1.00 -29.08 307.38 -9.27 -38.35 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -5.02 Total: 9.59 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -4.08 Total: -21.58 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.14 Total: -34.62 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -13.00 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.08 -9.27 -38.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353309441.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.295 kcal (2) G-P(sol) polarization free energy of solvation -29.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds