Wall clock time and date at job start Sun Mar 29 2020 23:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00153 * 2 1 4 4 H 1.48495 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46977 * 299.99883 * 3 2 1 6 6 H 1.48496 * 109.47065 * 59.99599 * 3 2 1 7 7 C 1.37879 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99610 * 184.59481 * 7 2 1 9 9 C 1.50703 * 120.00077 * 4.59140 * 7 2 1 10 10 H 1.08996 * 109.46706 * 174.68728 * 9 7 2 11 11 C 1.52996 * 109.47018 * 54.68445 * 9 7 2 12 12 C 1.50700 * 109.47341 * 64.99967 * 11 9 7 13 13 O 1.21289 * 119.99643 * 359.97438 * 12 11 9 14 14 N 1.34774 * 120.00461 * 180.02562 * 12 11 9 15 15 C 1.46500 * 120.00432 * 180.02562 * 14 12 11 16 16 C 1.52998 * 117.49738 * 223.62053 * 15 14 12 17 17 C 1.53001 * 117.50100 * 154.99600 * 15 14 12 18 18 C 1.50704 * 109.47058 * 294.68294 * 9 7 2 19 19 C 1.38230 * 119.99900 * 271.63751 * 18 9 7 20 20 C 1.38234 * 119.99675 * 179.97438 * 19 18 9 21 21 C 1.38229 * 120.00130 * 359.96119 * 20 19 18 22 22 C 1.38234 * 120.00249 * 359.97438 * 21 20 19 23 23 C 1.38232 * 119.99884 * 0.07544 * 22 21 20 24 24 H 0.97003 * 120.00319 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46976 * 185.00095 * 11 9 7 26 26 H 1.09006 * 109.47146 * 304.99648 * 11 9 7 27 27 H 0.97006 * 119.99613 * 359.97438 * 14 12 11 28 28 H 1.08999 * 115.54793 * 9.31796 * 15 14 12 29 29 H 1.09004 * 117.49688 * 359.97438 * 16 15 14 30 30 H 1.08994 * 117.50119 * 145.01731 * 16 15 14 31 31 H 1.08993 * 117.49627 * 214.97768 * 17 15 14 32 32 H 1.08997 * 117.49622 * 359.97438 * 17 15 14 33 33 H 1.08001 * 120.00158 * 359.97438 * 19 18 9 34 34 H 1.08005 * 119.99899 * 179.97438 * 20 19 18 35 35 H 1.07999 * 120.00060 * 179.71697 * 21 20 19 36 36 H 1.08001 * 120.00212 * 179.97438 * 22 21 20 37 37 H 1.08000 * 120.00541 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0818 -1.1955 0.0755 9 6 1.2546 -2.4972 -0.1034 10 1 1.9651 -3.3199 -0.1821 11 6 0.3614 -2.4739 -1.3453 12 6 1.2212 -2.4091 -2.5813 13 8 2.4295 -2.3835 -2.4788 14 7 0.6476 -2.3785 -3.8005 15 6 1.4835 -2.3161 -5.0020 16 6 1.0584 -1.3491 -6.1088 17 6 0.8901 -2.8572 -6.3044 18 6 0.4021 -2.6854 1.1250 19 6 0.9278 -3.3062 2.2426 20 6 0.1460 -3.4784 3.3696 21 6 -1.1612 -3.0291 3.3791 22 6 -1.6866 -2.4071 2.2620 23 6 -0.9051 -2.2358 1.1347 24 1 -0.4851 0.8400 -0.0004 25 1 -0.2465 -3.3782 -1.3726 26 1 -0.2889 -1.5999 -1.3089 27 1 -0.3188 -2.3986 -3.8824 28 1 2.5520 -2.4567 -4.8391 29 1 0.1566 -0.7596 -5.9431 30 1 1.8473 -0.8532 -6.6743 31 1 1.5683 -3.3535 -6.9984 32 1 -0.1220 -3.2600 -6.2671 33 1 1.9493 -3.6567 2.2354 34 1 0.5566 -3.9638 4.2426 35 1 -1.7735 -3.1678 4.2580 36 1 -2.7080 -2.0565 2.2693 37 1 -1.3156 -1.7503 0.2617 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353309441.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:32 Heat of formation + Delta-G solvation = -3.105043 kcal Electronic energy + Delta-G solvation = -19202.266920 eV Core-core repulsion = 16330.507605 eV Total energy + Delta-G solvation = -2871.759316 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.71417 -39.68387 -37.92739 -35.99202 -33.63310 -32.89400 -31.39649 -30.00096 -27.75789 -24.65507 -23.24256 -23.19052 -22.55998 -21.63227 -20.90338 -18.41903 -17.87000 -17.26834 -16.97264 -16.82135 -15.82061 -15.55683 -15.42738 -15.17188 -14.67701 -14.54891 -13.78444 -13.67409 -13.34875 -13.30882 -13.10299 -12.84168 -12.72516 -12.45341 -12.35104 -12.09045 -11.87731 -11.70190 -11.40796 -11.06702 -11.04109 -10.62807 -10.29307 -9.54608 -9.38966 -9.11153 -7.94808 -6.10575 0.89809 1.00985 1.33955 1.37866 1.48262 1.96208 2.38599 2.44917 3.06353 3.19159 3.38326 3.86409 4.10848 4.13964 4.24866 4.34885 4.42801 4.52636 4.70105 4.76531 4.78965 4.89800 4.93146 5.05442 5.09127 5.15847 5.23140 5.39859 5.54765 5.62599 5.68686 5.75484 5.90679 5.95693 6.10483 6.36589 6.43049 6.58991 6.78077 6.85910 7.51454 7.61406 8.94254 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.018270 B = 0.006997 C = 0.005757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.238031 B = 4000.546208 C = 4862.516338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.033 3.967 3 Si 0.929 3.071 4 H -0.288 1.288 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.490 4.490 8 H 0.026 0.974 9 C 0.088 3.912 10 H 0.014 0.986 11 C -0.128 4.128 12 C 0.521 3.479 13 O -0.574 6.574 14 N -0.704 5.704 15 C 0.047 3.953 16 C -0.191 4.191 17 C -0.162 4.162 18 C -0.052 4.052 19 C -0.152 4.152 20 C -0.140 4.140 21 C -0.149 4.149 22 C -0.147 4.147 23 C -0.081 4.081 24 H 0.261 0.739 25 H 0.077 0.923 26 H 0.124 0.876 27 H 0.410 0.590 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.127 0.873 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.252 -5.034 -5.982 10.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.166 4.166 3 Si 0.757 3.243 4 H -0.213 1.213 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.528 4.528 8 H 0.045 0.955 9 C 0.068 3.932 10 H 0.033 0.967 11 C -0.168 4.168 12 C 0.311 3.689 13 O -0.452 6.452 14 N -0.355 5.355 15 C -0.059 4.059 16 C -0.230 4.230 17 C -0.200 4.200 18 C -0.052 4.052 19 C -0.170 4.170 20 C -0.158 4.158 21 C -0.166 4.166 22 C -0.165 4.165 23 C -0.100 4.100 24 H 0.071 0.929 25 H 0.095 0.905 26 H 0.142 0.858 27 H 0.246 0.754 28 H 0.126 0.874 29 H 0.117 0.883 30 H 0.125 0.875 31 H 0.134 0.866 32 H 0.129 0.871 33 H 0.120 0.880 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.145 0.855 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.521 -4.875 -5.887 9.429 hybrid contribution 0.556 1.238 0.034 1.358 sum -4.965 -3.637 -5.853 8.493 Atomic orbital electron populations 1.69754 1.05296 1.26239 1.51057 1.25231 0.95794 1.00235 0.95331 0.85947 0.78914 0.81873 0.77527 1.21341 1.20592 1.20582 1.20977 0.91898 0.91441 1.48475 0.95545 1.17534 0.91952 0.94751 0.88922 0.96717 1.21764 0.99248 1.04140 0.91653 1.21213 0.88871 0.73548 0.85305 1.90581 1.17032 1.50368 1.87191 1.45381 1.10007 1.75860 1.04298 1.21569 0.95857 1.06806 0.81652 1.23459 1.04169 0.93569 1.01813 1.23429 1.03465 0.95871 0.97221 1.20305 0.94224 0.93999 0.96714 1.21073 0.99346 1.02085 0.94476 1.21154 0.94910 1.01968 0.97763 1.21201 0.95809 1.00851 0.98778 1.21367 1.00228 1.00729 0.94141 1.21334 0.93451 0.95699 0.99496 0.92851 0.90487 0.85823 0.75395 0.87448 0.88267 0.87520 0.86568 0.87075 0.87961 0.85019 0.84599 0.85523 0.85094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.17 7.97 21.45 0.17 -45.00 16 2 C 0.03 1.80 5.13 84.65 0.43 2.23 16 3 Si 0.93 44.99 29.54 68.60 2.03 47.01 16 4 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 5 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 6 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 7 C -0.49 -27.66 7.27 25.60 0.19 -27.47 16 8 H 0.03 1.61 7.82 -2.91 -0.02 1.59 16 9 C 0.09 4.40 1.97 -12.29 -0.02 4.38 16 10 H 0.01 0.76 7.91 -2.39 -0.02 0.75 16 11 C -0.13 -5.59 4.08 29.85 0.12 -5.47 16 12 C 0.52 22.86 7.58 87.66 0.66 23.53 16 13 O -0.57 -30.18 14.55 -3.06 -0.04 -30.23 16 14 N -0.70 -23.42 5.57 -442.53 -2.46 -25.88 16 15 C 0.05 1.40 6.43 44.99 0.29 1.69 16 16 C -0.19 -4.36 10.46 30.59 0.32 -4.04 16 17 C -0.16 -3.19 10.46 30.60 0.32 -2.87 16 18 C -0.05 -2.41 4.69 -19.86 -0.09 -2.50 16 19 C -0.15 -6.51 9.71 22.27 0.22 -6.29 16 20 C -0.14 -5.08 10.05 22.27 0.22 -4.86 16 21 C -0.15 -5.08 10.05 22.27 0.22 -4.86 16 22 C -0.15 -5.44 10.05 22.27 0.22 -5.22 16 23 C -0.08 -3.51 7.46 22.27 0.17 -3.34 16 24 H 0.26 12.88 8.31 -92.71 -0.77 12.11 16 25 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 26 H 0.12 5.65 4.70 -2.38 -0.01 5.64 16 27 H 0.41 10.95 8.83 -92.70 -0.82 10.13 16 28 H 0.11 3.72 7.40 -2.39 -0.02 3.70 16 29 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.10 4.30 8.06 -2.91 -0.02 4.28 16 34 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 35 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 36 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 37 H 0.13 5.80 5.17 -2.91 -0.02 5.78 16 Total: -1.00 -64.80 307.38 3.22 -61.59 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.26 Total: 27.60 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: 3.27 Total: -35.09 kcal Atomic # 7 Polarization: -68.59 SS G_CDS: -2.29 Total: -70.89 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.04 Total: -30.23 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -64.80 3.22 -61.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353309441.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.483 kcal (2) G-P(sol) polarization free energy of solvation -64.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds